Cold Spring Harbor Molecular Case Studies最新文献

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Perinatal-lethal nonimmune fetal hydrops attributed to MECOM-associated bone marrow failure. 由mecom相关骨髓衰竭引起的围产期致死性非免疫性胎儿水肿。
IF 1.8
Cold Spring Harbor Molecular Case Studies Pub Date : 2023-06-01 DOI: 10.1101/mcs.a006289
Camille A Dash, Jill A Madden, Christy Cummings, Melissa Rose, Sheria D Wilson, Mari Mori, Pankaj B Agrawal, Bimal P Chaudhari, Monica H Wojcik
{"title":"Perinatal-lethal nonimmune fetal hydrops attributed to <i>MECOM</i>-associated bone marrow failure.","authors":"Camille A Dash,&nbsp;Jill A Madden,&nbsp;Christy Cummings,&nbsp;Melissa Rose,&nbsp;Sheria D Wilson,&nbsp;Mari Mori,&nbsp;Pankaj B Agrawal,&nbsp;Bimal P Chaudhari,&nbsp;Monica H Wojcik","doi":"10.1101/mcs.a006289","DOIUrl":"https://doi.org/10.1101/mcs.a006289","url":null,"abstract":"<p><p>Pathogenic variants in <i>MECOM</i>, a gene critical to the self-renewal and proliferation of hematopoietic stem cells, are known to cause a rare bone marrow failure syndrome associated with amegakaryocytic thrombocytopenia and bilateral radioulnar synostosis known as RUSAT2. However, the spectrum of disease seen with causal variants in <i>MECOM</i> is broad, ranging from mildly affected adults to fetal loss. We report two cases of infants born preterm who presented at birth with symptoms of bone marrow failure including severe anemia, hydrops, and petechial hemorrhages; radioulnar synostosis was not observed in either patient, and, unfortunately, neither infant survived. In both cases, genomic sequencing revealed de novo variants in <i>MECOM</i> considered to be responsible for their severe presentations. These cases add to the growing body of literature that describe <i>MECOM</i>-associated disease, particularly <i>MECOM</i> as a cause of fetal hydrops due to bone marrow failure in utero. Furthermore, they support the use of a broad sequencing approach for perinatal diagnosis, as <i>MECOM</i> is absent from available targeted gene panels for hydrops, and highlight the importance of postmortem genomic investigation.</p>","PeriodicalId":10360,"journal":{"name":"Cold Spring Harbor Molecular Case Studies","volume":"9 3","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/43/a3/MCS006289Das.PMC10393185.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9930248","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Clinical case report: mosaic ANK3 pathogenic variant in a patient with autism spectrum disorder and neurodevelopmental delay. 临床病例报告:马赛克ANK3致病性变异在自闭症谱系障碍和神经发育迟缓患者。
IF 1.8
Cold Spring Harbor Molecular Case Studies Pub Date : 2023-06-01 DOI: 10.1101/mcs.a006233
Xiaolan Fang, Timothy Fee, Jessica Davis, Elliot S Stolerman, Raymond C Caylor
{"title":"Clinical case report: mosaic <i>ANK3</i> pathogenic variant in a patient with autism spectrum disorder and neurodevelopmental delay.","authors":"Xiaolan Fang,&nbsp;Timothy Fee,&nbsp;Jessica Davis,&nbsp;Elliot S Stolerman,&nbsp;Raymond C Caylor","doi":"10.1101/mcs.a006233","DOIUrl":"https://doi.org/10.1101/mcs.a006233","url":null,"abstract":"<p><p>Ankyrins are a family of proteins that link integral membrane proteins to the underlying spectrin-actin cytoskeleton and play a key role in activities such as cell motility, activation, proliferation, cell-cell contact, and the maintenance of specialized membrane domains. <i>Ankyrin 3 (ANK3)</i> is one of the three major subtypes of the ankyrin protein family. Ankryin genes are ubiquitously expressed, but their expression is highest in the brain. In the central nervous system, ankyrins have critical roles at the axonal initial segment, the nodes of Ranvier, and at synapses. To date, pathogenic variants in <i>ANK3</i> have been reported in individuals with neuropsychiatric, cognitive, and neurodevelopmental disorders. The clinical severity is variable in these individuals with both autosomal recessive and autosomal dominant patterns of inheritance observed. These findings have suggested genotype-phenotype correlations and even isoform-specific implications for individuals with <i>ANK3</i> pathogenic variants. Here, we report a patient with speech delay, autism spectrum disorder, and a language disorder in which a de novo nonsense <i>ANK3</i> alteration was discovered by exome sequencing. Interestingly, the next-generation sequencing data suggested the change was mosaic in the affected child, and it was confirmed by digital polymerase chain reaction (dPCR) at 22% allelic fraction. To our knowledge, this is the first case of an individual with a pathogenic mosaic <i>ANK3</i> variant. This finding expands upon the existing genotype-phenotype information available for the <i>ANK3</i> gene while also highlighting potential gene expression correlations with phenotype.</p>","PeriodicalId":10360,"journal":{"name":"Cold Spring Harbor Molecular Case Studies","volume":"9 3","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/7d/e2/MCS006233Fan.PMC10393183.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9920403","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Contributions of rare and common variation to early-onset and atypical dementia risk. 罕见和常见变异对早发性和非典型痴呆风险的贡献。
IF 1.8
Cold Spring Harbor Molecular Case Studies Pub Date : 2023-06-01 DOI: 10.1101/mcs.a006271
Carter A Wright, Jared W Taylor, Meagan Cochran, James M J Lawlor, Belle A Moyers, Michelle D Amaral, Zachary T Bonnstetter, Princess Carter, Veronika Solomon, Richard M Myers, Marissa Natelson Love, David S Geldmacher, Sara J Cooper, Erik D Roberson, Jesse Nicholas Cochran
{"title":"Contributions of rare and common variation to early-onset and atypical dementia risk.","authors":"Carter A Wright,&nbsp;Jared W Taylor,&nbsp;Meagan Cochran,&nbsp;James M J Lawlor,&nbsp;Belle A Moyers,&nbsp;Michelle D Amaral,&nbsp;Zachary T Bonnstetter,&nbsp;Princess Carter,&nbsp;Veronika Solomon,&nbsp;Richard M Myers,&nbsp;Marissa Natelson Love,&nbsp;David S Geldmacher,&nbsp;Sara J Cooper,&nbsp;Erik D Roberson,&nbsp;Jesse Nicholas Cochran","doi":"10.1101/mcs.a006271","DOIUrl":"https://doi.org/10.1101/mcs.a006271","url":null,"abstract":"<p><p>We collected and analyzed genomic sequencing data from individuals with clinician-diagnosed early-onset or atypical dementia. Thirty-two patients were previously described, with 68 newly described in this report. Of those 68, 62 patients self-reported white, non-Hispanic ethnicity and 6 reported as African-American, non-Hispanic. Fifty-three percent of patients had a returnable variant. Five patients harbored a pathogenic variant as defined by the American College of Medical Genetics criteria for pathogenicity. A polygenic risk score (PRS) was calculated for Alzheimer's patients in the total cohort and compared to the scores of a late-onset Alzheimer's cohort and a control set. Patients with early-onset Alzheimer's had higher non-<i>APOE</i> PRSs than patients with late-onset Alzheimer's, supporting the conclusion that both rare and common genetic variation associate with early-onset neurodegenerative disease risk.</p>","PeriodicalId":10360,"journal":{"name":"Cold Spring Harbor Molecular Case Studies","volume":"9 3","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/35/d3/MCS006271Wri.PMC10393188.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9927648","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Clinical features of PPP2 syndrome type R5D (Jordan's syndrome) to support standardization of care. PPP2综合征R5D型(约旦综合征)临床特征支持规范化护理。
IF 1.8
Cold Spring Harbor Molecular Case Studies Pub Date : 2023-06-01 DOI: 10.1101/mcs.a006285
Alexis D Levine, Wendy K Chung
{"title":"Clinical features of PPP2 syndrome type R5D (Jordan's syndrome) to support standardization of care.","authors":"Alexis D Levine,&nbsp;Wendy K Chung","doi":"10.1101/mcs.a006285","DOIUrl":"https://doi.org/10.1101/mcs.a006285","url":null,"abstract":"<p><p>PPP2 syndrome type R5D, or Jordan's syndrome, is a neurodevelopmental disorder caused by pathogenic missense variants in <i>PPP2R5D</i>, a β-subunit of the Protein Phosphatase 2A (PP2A). The condition is characterized by global developmental delays, seizures, macrocephaly, ophthalmological abnormalities, hypotonia, attention disorder, social and sensory challenges often associated with autism, disordered sleep, and feeding difficulties. Among affected individuals, there is a broad spectrum of severity, and each person only has a subset of all associated symptoms. Some, but not all, of the clinical variability is due to differences in the <i>PPP2R5D</i> genotype. These suggested clinical care guidelines for the evaluation and treatment of individuals with PPP2 syndrome type R5D are based on data from 100 individuals reported in the literature and from an ongoing natural history study. As more data are available, particularly for adults and regarding treatment response, we anticipate that revisions to these guidelines will be made.</p>","PeriodicalId":10360,"journal":{"name":"Cold Spring Harbor Molecular Case Studies","volume":"9 3","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/99/3c/MCS006285Lev.PMC10393186.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9977956","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Melanoma in a patient with DNMT3A overgrowth syndrome. 一名 DNMT3A 过度生长综合征患者的黑色素瘤。
IF 1.8
Cold Spring Harbor Molecular Case Studies Pub Date : 2023-05-09 Print Date: 2023-04-01 DOI: 10.1101/mcs.a006267
David Y Chen, Leslie A Sutton, Sai Mukund Ramakrishnan, Eric J Duncavage, Sharon E Heath, Leigh A Compton, Christopher A Miller, Timothy J Ley
{"title":"Melanoma in a patient with DNMT3A overgrowth syndrome.","authors":"David Y Chen, Leslie A Sutton, Sai Mukund Ramakrishnan, Eric J Duncavage, Sharon E Heath, Leigh A Compton, Christopher A Miller, Timothy J Ley","doi":"10.1101/mcs.a006267","DOIUrl":"10.1101/mcs.a006267","url":null,"abstract":"<p><p>Alterations in epigenetic regulators are increasingly recognized as early events in tumorigenesis; thus, patients with acquired or inherited variants in epigenetic regulators may be at increased risk for developing multiple types of cancer. DNMT3A overgrowth syndrome (DOS), caused by germline pathogenic variants in the DNA methyltransferase gene <i>DNMT3A</i>, has been associated with a predisposition toward development of hematopoietic and neuronal malignancies. DNMT3A deficiency has been described to promote keratinocyte proliferation in mice. Although altered DNA methylation patterns are well-recognized in melanoma, the role of DNA methyltransferases in melanoma pathogenesis is not clear. We report the case of an adult DOS patient with a germline <i>DNMT3A</i> loss-of-function mutation, who developed an early-onset melanoma with regional lymph node metastatic disease. Exome sequencing of the primary tumor identified an additional acquired, missense <i>DNMT3A</i> mutation in the dominant tumor clone, suggesting that the loss of DNMT3A function was relevant for the development of this tumor.</p>","PeriodicalId":10360,"journal":{"name":"Cold Spring Harbor Molecular Case Studies","volume":"9 2","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-05-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10240841/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10143237","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Defining clonal hematopoiesis of indeterminate potential: evolutionary dynamics and detection under aging and inflammation. 定义具有不确定潜能的克隆造血:衰老和炎症下的进化动态和检测。
IF 1.8
Cold Spring Harbor Molecular Case Studies Pub Date : 2023-05-09 Print Date: 2023-04-01 DOI: 10.1101/mcs.a006251
Elisabeth A Goldman, Paul T Spellman, Anupriya Agarwal
{"title":"Defining clonal hematopoiesis of indeterminate potential: evolutionary dynamics and detection under aging and inflammation.","authors":"Elisabeth A Goldman, Paul T Spellman, Anupriya Agarwal","doi":"10.1101/mcs.a006251","DOIUrl":"10.1101/mcs.a006251","url":null,"abstract":"<p><p>Clonal hematopoiesis (CH), in which hematopoietic stem and progenitor cell (HSPC) clones and their progeny expand in the circulating blood cell population, occurs following the acquisition of somatic driver mutations. Individuals diagnosed with clonal hematopoiesis of indeterminate potential (CHIP) carry somatic mutations in hematological malignancy-associated driver genes, historically at or above a variant allele frequency of 2%, but do not exhibit abnormal blood cell counts or any other symptoms of hematologic disease. However, CHIP is associated with moderately increased risk of hematological cancer and a greater likelihood of cardiovascular and pulmonary disease. Recent advances in the resolution of high-throughput sequencing experiments suggest CHIP is much more prevalent in the population than once thought, particularly among those aged 60 and over. Although CHIP does elevate the risk of eventual hematological malignancy, only one in 10 individuals with CHIP will receive such a diagnosis; the problem lies in the continued difficulty in accurately separating the 10% of CHIP patients who are most likely to be in a premalignant state from those who are not, given the heterogeneity of this condition and the etiology of the associated hematological cancers. Concerns over the risk of eventual malignancies must be balanced with growing recognition of CH as a common age-dependent occurrence, and efforts to better characterize and differentiate oncogenic clonal expansion from that which is much more benign. In this review, we discuss evolutionary dynamics of CH and CHIP, the relationship of CH to aging and inflammation, and the role of the epigenome in promoting potentially pathogenic or benign cellular trajectories. We outline molecular mechanisms that may contribute to heterogeneity in the etiology of CHIP and the incidence of malignant disease among individuals. Finally, we discuss epigenetic markers and modifications for CHIP detection and monitoring with the potential for translational applications and clinical utility in the near future.</p>","PeriodicalId":10360,"journal":{"name":"Cold Spring Harbor Molecular Case Studies","volume":"9 2","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-05-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/c5/b1/MCS006251Gol.PMC10240836.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9635242","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Clonal cytopenia of undetermined significance (CCUS)-associated reversion of donor-derived, transient αβ T-cell large granular clonal lymphocytosis, emerging post-transplant in a patient with a history of γδ T-cell large granular lymphocytic leukemia. 一名有γδ t细胞大颗粒淋巴细胞白血病病史的患者在移植后出现供体来源的短暂性αβ t细胞大颗粒克隆性淋巴细胞增多症(CCUS)相关逆转。
IF 1.8
Cold Spring Harbor Molecular Case Studies Pub Date : 2023-04-01 DOI: 10.1101/mcs.a006241
Siba El Hussein, Andrew G Evans, John M Fitzsimmons, Nufatt Leong, Meghan Buldo, Jeremy P Segal, Audrey N Jajosky, Paul G Rothberg, Jane L Liesveld, Zoltán N Oltvai
{"title":"Clonal cytopenia of undetermined significance (CCUS)-associated reversion of donor-derived, transient αβ T-cell large granular clonal lymphocytosis, emerging post-transplant in a patient with a history of γδ T-cell large granular lymphocytic leukemia.","authors":"Siba El Hussein,&nbsp;Andrew G Evans,&nbsp;John M Fitzsimmons,&nbsp;Nufatt Leong,&nbsp;Meghan Buldo,&nbsp;Jeremy P Segal,&nbsp;Audrey N Jajosky,&nbsp;Paul G Rothberg,&nbsp;Jane L Liesveld,&nbsp;Zoltán N Oltvai","doi":"10.1101/mcs.a006241","DOIUrl":"https://doi.org/10.1101/mcs.a006241","url":null,"abstract":"<p><p>Autologous and allogeneic hematopoietic stem cell transplantation (HSCT) has revolutionized the therapy of hematolymphoid malignancies. Yet, how to best detect or predict the emergence of HSCT-related complications remain unresolved. Here, we describe a case of donor-derived, transient Alpha Beta (αβ) T-cell large granular clonal lymphocytosis and cytopenia that emerged post-HSCT in a patient with a history of gamma delta (γδ) T-cell large granular lymphocytic leukemia (T-LGLL). Clonal unrelatedness of post-transplant T-LGL lymphocytosis to the patient's pretransplant T-LGLL was first identified by T-cell receptor (TCR) PCR showing different sized fragments of rearranged gamma chains, in addition to shift from γδ to αβ TCR expression by flow cytometry analyses. Donor-derivation of the patient's post-transplant clonal lymphocytosis was confirmed by serial chimerism analyses of recipient's blood specimens demonstrating 100% donor DNA. Moreover, oncogenic <i>DNMT3A</i> and <i>RUNX1</i> mutations were detected by next-generation sequencing (NGS) only in post-transplant specimens. Intriguingly, despite continued increase in <i>DNMT3A</i> and <i>RUNX1</i> mutation load, the patient's clonal lymphocytosis and anemia eventually largely resolved; yet, the observed mutation profile with persistent thrombocytopenia indicated secondary clonal cytopenia of undetermined significance (CCUS) in the absence of overt morphologic evidence of myeloid neoplasm in the marrow. This case illustrates the utility of longitudinal chimerism analysis and NGS testing combined with flow cytometric immunophenotyping to evaluate emerging donor-derived hematolymphoid processes and to properly interpret partial functional engraftment. It may also support the notion that driver mutation-induced microenvironmental changes may paradoxically contribute to reestablishing tissue homeostasis.</p>","PeriodicalId":10360,"journal":{"name":"Cold Spring Harbor Molecular Case Studies","volume":"9 2","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/c9/55/MCS006241Elh.PMC10240839.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9635783","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Mismatch repair-deficient glioma with spatially distinct IDH-mutant and IDH-wild type components arising in the setting of Lynch syndrome. 错配修复缺陷胶质瘤,具有空间上不同的idh突变型和idh野生型成分,出现在Lynch综合征的背景下。
IF 1.8
Cold Spring Harbor Molecular Case Studies Pub Date : 2023-04-01 DOI: 10.1101/mcs.a006280
Hao Tan, Caleb Nerison, Cooper Stateler, Stephen G Bowden, Ahmed M Raslan, Prakash Ambady, Ramon F Barajas, Matthew D Wood
{"title":"Mismatch repair-deficient glioma with spatially distinct IDH-mutant and IDH-wild type components arising in the setting of Lynch syndrome.","authors":"Hao Tan,&nbsp;Caleb Nerison,&nbsp;Cooper Stateler,&nbsp;Stephen G Bowden,&nbsp;Ahmed M Raslan,&nbsp;Prakash Ambady,&nbsp;Ramon F Barajas,&nbsp;Matthew D Wood","doi":"10.1101/mcs.a006280","DOIUrl":"https://doi.org/10.1101/mcs.a006280","url":null,"abstract":"<p><p>Pathogenic mutations in <i>MLH1</i>, <i>MSH2</i>, <i>PMS2</i>, and <i>MSH6</i> compromise DNA mismatch repair mechanisms and in the heterozygous state result in Lynch syndrome, which is typified by a predisposition to endometrial, ovarian, colorectal, gastric, breast, hematologic, and soft tissue cancers. Rarely, germline pathogenic aberrations in these genes are associated with the development of primary central nervous system tumors. We present a report of an adult female with no prior cancer history who presented with a multicentric, infiltrative supratentorial glioma involving both the left anterior temporal horn and left precentral gyrus. Surgical treatment and neuropathological/molecular evaluation of these lesions revealed discordant isocitrate dehydrogenase (IDH) status and histologic grade at these spatially distinct disease sites. A frameshift alteration within the <i>MLH1</i> gene (p.R217fs*12, c.648delT) was identified in both lesions and subsequently identified in germline testing of a blood sample, consistent with Lynch syndrome. Despite distinct histopathologic features and divergent IDH status of the patient's tumors, the molecular findings suggest that both sites of intracranial neoplasia may have developed as a consequence of underlying monoallelic germline mismatch repair deficiency. This case illustrates the importance of characterizing the genetic profile of multicentric gliomas and highlights the oncogenic potential of germline mismatch repair gene pathogenic alterations within central nervous system gliomas.</p>","PeriodicalId":10360,"journal":{"name":"Cold Spring Harbor Molecular Case Studies","volume":"9 2","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/f6/08/MCS006280Tan.PMC10240835.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9573811","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A familial SAMD9 variant present in pediatric myelodysplastic syndrome. 儿童骨髓增生异常综合征中存在家族性SAMD9变异。
IF 1.8
Cold Spring Harbor Molecular Case Studies Pub Date : 2023-04-01 DOI: 10.1101/mcs.a006256
Mahvish Q Rahim, April Rahrig, Kathleen Overholt, Erin Conboy, Magdalena Czader, Amanda June Saraf
{"title":"A familial <i>SAMD9</i> variant present in pediatric myelodysplastic syndrome.","authors":"Mahvish Q Rahim,&nbsp;April Rahrig,&nbsp;Kathleen Overholt,&nbsp;Erin Conboy,&nbsp;Magdalena Czader,&nbsp;Amanda June Saraf","doi":"10.1101/mcs.a006256","DOIUrl":"https://doi.org/10.1101/mcs.a006256","url":null,"abstract":"<p><p>Myelodysplastic syndrome (MDS) is a rare pediatric diagnosis characterized by ineffective hematopoiesis with potential to evolve into acute myelogenous leukemia (AML). In this report, we describe a unique case of a 17-yr-old female with an aggressive course of MDS with excess blasts who was found to have monosomy 7 and a <i>SAMD9</i> germline variant, which has not previously been associated with a MDS phenotype. This case of MDS was extremely rapidly progressing, showing resistance to chemotherapy and stem cell transplant, unfortunately resulting in patient death. It is imperative to further investigate this rare variant to aid in the future care of patients with this variant.</p>","PeriodicalId":10360,"journal":{"name":"Cold Spring Harbor Molecular Case Studies","volume":"9 2","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10240840/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9583301","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genomic profiling of a metastatic anaplastic melanocytic neuroectodermal tumor arising from a mature thymic teratoma as part of a mediastinal germ cell tumor. 作为纵隔生殖细胞肿瘤一部分的成熟胸腺畸胎瘤引起的转移性间变性黑素细胞神经外胚层肿瘤的基因组分析。
IF 1.8
Cold Spring Harbor Molecular Case Studies Pub Date : 2023-04-01 DOI: 10.1101/mcs.a006257
Sylvain Mayeur, Benoit Lhermitte, Justine Gantzer, Anne Molitor, Tristan Stemmelen, Sébastien Meyer, Aline Kolmer, Jean-Emmanuel Kurtz, Seiamak Bahram, Raphael Carapito
{"title":"Genomic profiling of a metastatic anaplastic melanocytic neuroectodermal tumor arising from a mature thymic teratoma as part of a mediastinal germ cell tumor.","authors":"Sylvain Mayeur,&nbsp;Benoit Lhermitte,&nbsp;Justine Gantzer,&nbsp;Anne Molitor,&nbsp;Tristan Stemmelen,&nbsp;Sébastien Meyer,&nbsp;Aline Kolmer,&nbsp;Jean-Emmanuel Kurtz,&nbsp;Seiamak Bahram,&nbsp;Raphael Carapito","doi":"10.1101/mcs.a006257","DOIUrl":"https://doi.org/10.1101/mcs.a006257","url":null,"abstract":"<p><p>Following chemotherapy, a mediastinal germ cell tumor can lead to a mature teratoma that is composed of tissues derived from all three germ layers. Although teratoma is usually curable, in rare cases it can give rise to various somatic tumors and exceptionally it undergoes melanocytic neuroectodermal tumor (MNT) transformation, a process that is not well-described. We report a patient with a postchemotherapy thymic teratoma associated with an MNT component who, 10 years later, additionally presented a vertebral metastasis corresponding to an anaplastic MNT. Using exome sequencing of the mature teratoma, the MNT and its metastatic vertebral anaplastic MNT components, we identified 19 somatic mutations shared by at least two components. Six mutations were common to all three components, and three of them were located in the known cancer-related genes <i>KRAS</i> (p.E63K), <i>TP53</i> (p.P222X), and <i>POLQ</i> (p.S447P). Gene set enrichment analysis revealed that the melanoma tumorigenesis pathway was enriched in mutated genes including the four major driver genes <i>KRAS</i>, <i>TP53</i>, <i>ERBB4</i>, and <i>KDR</i>, indicating that these genes may be involved in the development of the anaplastic MNT transformation of the teratoma. To our knowledge, this is the first molecular study realized on MNT. Understanding the clinicopathological and molecular characteristics of these tumors is essential to better understand their development and to improve therapeutics.</p>","PeriodicalId":10360,"journal":{"name":"Cold Spring Harbor Molecular Case Studies","volume":"9 2","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/a2/59/MCS006257May.PMC10240838.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9938287","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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