Dmitry Sinelshchikov, Juan Belmonte-Beitia, Matteo Italia
{"title":"A mathematical model of CAR-T cell therapy in combination with chemotherapy for malignant gliomas.","authors":"Dmitry Sinelshchikov, Juan Belmonte-Beitia, Matteo Italia","doi":"10.1063/5.0260252","DOIUrl":"https://doi.org/10.1063/5.0260252","url":null,"abstract":"<p><p>Malignant gliomas (MGs) are among the most aggressive primary brain tumors, characterized by a high degree of resistance to therapy and poor prognosis. In this work, we develop a mathematical model to investigate the dynamics of MG under the combined effects of chemotherapy and chimeric antigen receptor cell therapy. The proposed model is a five-dimensional dynamical system incorporating impulsive inputs that correspond to the clinical administration of chemotherapy and immunotherapy. We demonstrate the non-negativity of solutions for non-negative initial conditions, ensuring the biological relevance of the model. We show that if we apply both therapies only once, the trajectories are attracted to an invariant surface corresponding to the tumor carrying capacity. Conversely, under constant administration of both treatments, we identify parameter ranges in which tumor eradication is achievable. Furthermore, we numerically study various treatment combinations to determine optimal protocols at the population level. To this end, we generate a cohort of 104 virtual patients with model parameters sampled uniformly within clinically relevant ranges and carry out in silico trials. Our findings indicate that tumor growth rate, chemotherapy efficacy, and tumor-induced immunosuppression are the key determinants of survival outcomes. We believe that our results provide new theoretical insights into treatment optimization and offer a framework for refining the design of clinical trials for MG therapies.</p>","PeriodicalId":9974,"journal":{"name":"Chaos","volume":"35 6","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144198332","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Physics-driven deep learning methods and numerically intractable \"bad\" Jaulent-Miodek equation.","authors":"Jing-Jing Su, Gao-Liang Tao, Ran Li, Sheng Zhang","doi":"10.1063/5.0264041","DOIUrl":"https://doi.org/10.1063/5.0264041","url":null,"abstract":"<p><p>The \"bad\" Jaulent-Miodek (JM) equation serves to describe the motion of non-viscous shallow water wave packets in a flat-bottomed domain subject to shear forces. The \"bad\" JM equation exhibits poor properties, characterized by the linear instability of nonlinear waves on the zero-plane background, rendering it challenging to solve through traditional analytical and numerical methods. In this paper, two classic physics-driven deep learning approaches, namely, Physics-Informed Neural Networks (PINN) and Physics and Equality-Constrained Artificial Neural Networks (PECANN), are combined into a two-stage \"PINN+PECANN\" neural network to address the nonlinear wave evolution on the zero-plane background for the \"bad\" JM equation. The two-stage \"PINN+PECANN\" neural network method employs PINN in the first stage to pre-train the neural network, followed by fine-tuning of the network parameters using PECANN in the second stage. This approach not only correctly obtains solutions to the \"bad\" JM equation but also enhances computational efficiency. Specifically, we present the evolutionary behavior of nonlinear waves for the common initial values of the \"bad\" JM equation: Gauss wave packets, sech wave packets, and rational wave packets. Furthermore, the nonlinear interactions between two Gauss, sech, rational wave packets are provided. The results in this paper validate the advantages of physics-driven deep learning methods in solving equations with poor properties and open up a new pathway for obtaining unstable solutions of nonlinear equations.</p>","PeriodicalId":9974,"journal":{"name":"Chaos","volume":"35 6","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144198355","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Curvature-dependent onset of oscillations in excitable tissue.","authors":"Stephanie Dodson, Emily E Meyer, Timothy J Lewis","doi":"10.1063/5.0260991","DOIUrl":"https://doi.org/10.1063/5.0260991","url":null,"abstract":"<p><p>In cardiac tissue, the sinoatrial node (SAN) is responsible for initiating the periodic electrical pulses underlying heart beats. However, other heterogeneities (e.g., ischemic regions) can act as rogue pacemakers and produce oscillations in neighboring tissue that compete with the natural pacemaking of the SAN and cause potentially life-threatening arrhythmia. Thus, it is important to understand the physiological conditions that enable local regions of tissue to form pathological rhythms. It is well known that a small heterogeneity (a source) should not be able to easily activate a large area of excitable tissue (a sink). On a local level, this source-sink balance implies that positive curvature of a pacemaking region reduces the source-sink ratio and the ability to drive the neighboring tissue. However, while numerous studies provide evidence that supports the source-sink balance relationship, other studies have shown that for some depolarized heterogeneities, oscillations preferentially emerge from corners and other areas of high curvature. Here, we use an idealized two-domain reaction-diffusion system and a corresponding two-cell model to bridge the gap between these seemingly opposing viewpoints. In doing so, we identify the conditions for which curvature of a pacemaking region promotes or obstructs the production of oscillations in the neighboring tissue. Through our findings, we argue that the seemingly opposing views are, in fact, not contradictory, and the standard notion of source-sink balance is upheld, as long as we adapt a modified description of source and sink.</p>","PeriodicalId":9974,"journal":{"name":"Chaos","volume":"35 6","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144526608","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Aarsh Chotalia, Sapna Yadav, Richa Phogat, P Parmananda
{"title":"Blink it to sync it: Experimental evidence of synchronization of human brainwaves subjected to common photic forcing.","authors":"Aarsh Chotalia, Sapna Yadav, Richa Phogat, P Parmananda","doi":"10.1063/5.0276609","DOIUrl":"https://doi.org/10.1063/5.0276609","url":null,"abstract":"<p><p>In an effort to achieve synchronization in mesoscopic cortical activities, experiments were conducted on five individuals. An indirect coupling was established between the subjects via a common photic forcing. The results point to partial synchronization between intra- as well as inter-participant activities when subjected to common periodic photic stimulus. To investigate the possible mechanism, delayed correlations were computed. The constancy of phase shifts from these correlations, estimated by effective order parameter, suggests that partial phase resetting is the underlying mechanism.</p>","PeriodicalId":9974,"journal":{"name":"Chaos","volume":"35 6","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144198333","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Fractional Bloch oscillations.","authors":"Mario I Molina","doi":"10.1063/5.0275519","DOIUrl":"https://doi.org/10.1063/5.0275519","url":null,"abstract":"<p><p>We examine the effect of fractionality on the Bloch oscillations (BO) of a 1D tight-binding lattice when the discrete Laplacian is replaced by its fractional form. We obtain the eigenmodes and the dynamic propagation of an initially localized excitation in a closed form as a function of fractional exponent and the strength of the external potential. We find an oscillation period equal to that of the non-fractional case. The participation ratio is computed in a closed form, and it reveals that the localization of the modes increases with a deviation from the standard case and with an increase in the external constant field. When nonlinear effects are included, a competition between the tendency to Bloch oscillate and the trapping tendency typical of the Kerr effect is observed, which ultimately obliterates the BO in the limit of large nonlinearity.</p>","PeriodicalId":9974,"journal":{"name":"Chaos","volume":"35 6","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144198350","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Sivakumar Sudarsanan, Induja Pavithran, R I Sujith
{"title":"On the nature of nonequilibrium phase transition in a complex system.","authors":"Sivakumar Sudarsanan, Induja Pavithran, R I Sujith","doi":"10.1063/5.0265336","DOIUrl":"https://doi.org/10.1063/5.0265336","url":null,"abstract":"<p><p>The transition from a chaotic to a periodic oscillatory state can be smooth or abrupt in real-world complex systems. We study smooth and abrupt transitions in a turbulent reactive flow system. The turbulent reactive flow system consists of the flame, the acoustic field, and the hydrodynamic field interacting nonlinearly. Generally, as the Reynolds number is increased, a laminar flow becomes turbulent, and the range of time scales associated with the flow broadens. Yet, as the Reynolds number is increased in a turbulent reactive flow system, a single dominant time scale emerges in the acoustic pressure oscillations. By varying the Reynolds number at different rates, we observe smooth and abrupt transitions from chaos to order. For such smooth and abrupt transitions, we study the evolution of correlated (conformists and contrarians) and uncorrelated (disordered) dynamics between the acoustic pressure and the heat release rate oscillations in the spatiotemporal domain of the turbulent reactive flow system. We discover that the spatial extent of the disordered dynamics plays a critical role in deciding the abruptness of the transition. During the smooth transition, we observe a significant presence of disordered dynamics in the spatial domain. In contrast, abrupt transitions are accompanied by the abrupt disappearance of disordered dynamics from the spatial domain.</p>","PeriodicalId":9974,"journal":{"name":"Chaos","volume":"35 6","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144198354","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Chaotic dynamics and control in a discrete predation model with Holling II and prey refuge effects.","authors":"Rabia Mehdi, Ranchao Wu, Zakia Hammouch","doi":"10.1063/5.0260237","DOIUrl":"https://doi.org/10.1063/5.0260237","url":null,"abstract":"<p><p>Understanding predator-prey interactions is crucial for modeling ecological systems. This study investigates a discrete-time predator-prey system with a Holling type II functional response and prey refuge. Linear stability analysis establishes existence conditions and stability criteria for equilibrium points, while bifurcation analysis reveals critical transitions through period-doubling and Neimark-Sacker bifurcations. The center manifold theorem facilitates dimensionality reduction, enabling precise characterization of local dynamics near bifurcation points. Comprehensive numerical simulations-including bifurcation diagrams, phase portraits, maximum Lyapunov exponents, and time series-validate theoretical predictions and uncover complex behavioral regimes. A state feedback control strategy, derived from triangular stability regions, effectively suppresses chaotic fluctuations and stabilizes the system. These results advance fundamental understanding of ecological dynamics while offering practical stabilization techniques, bridging mathematical theory with applied ecological management. The interdisciplinary framework provides actionable insights for maintaining balance in complex ecological systems.</p>","PeriodicalId":9974,"journal":{"name":"Chaos","volume":"35 6","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144246717","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Two types of elliptic dark soliton solutions for the Hirota equation.","authors":"Qiaofeng Huang, Xuan Sun","doi":"10.1063/5.0268266","DOIUrl":"https://doi.org/10.1063/5.0268266","url":null,"abstract":"<p><p>We primarily study concave-downward and convex-upward types of elliptic dark soliton solutions for the Hirota equation, exhibiting a concave-downward shape on both upper and lower envelope surfaces and showing a convex-upward shape on the lower envelope surface, respectively. By analyzing the supremum and infimum of solutions, we provide the existence conditions for these two types of elliptic dark solitons. Additionally, we study two-elliptic dark soliton solutions combining both types with the same velocity and investigate the elastic collisions between these two types of solutions with different velocities.</p>","PeriodicalId":9974,"journal":{"name":"Chaos","volume":"35 6","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144324555","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Boris Podobnik, Luka Medvidovic, Dorian Wild, Stefano Boccaletti
{"title":"Empirical study and model of warfare dynamics: Willingness to risk.","authors":"Boris Podobnik, Luka Medvidovic, Dorian Wild, Stefano Boccaletti","doi":"10.1063/5.0277615","DOIUrl":"https://doi.org/10.1063/5.0277615","url":null,"abstract":"<p><p>Economists often highlight a gross domestic product (GDP) as a key metric in determining war outcomes, despite historical exceptions, such as the Taliban's victories over the Soviet and U.S. armies in Afghanistan-nations with vastly superior GDPs. Two critical factors that remain underexplored are the soldier's willingness to sacrifice for their country and a country's willingness to risk nuclear war. To address this gap, we conducted a worldwide survey to assess the maximum acceptable level of losses respondents would tolerate in their own country for varying levels of enemy losses. The findings were surprising: respondents, on average, considered 23% casualties (with a median of 10%) as an acceptable loss if it meant 100% destruction of the enemy. To determine which nuclear power might be more inclined to initiate a nuclear war, we introduce the willingness to risk ratio, defined as the ratio between the GDP that can be destroyed in enemy countries and the GDP that could be destroyed by the enemy in one's own country. Recognizing that conventional wars can serve as a pretext for a nuclear conflict between two nuclear powers, S and S', we developed a network model where bravery is defined at the micro level of individual soldiers, whereas defeatism can spread contagiously throughout the network. If due to increasing aid of the nuclear power S' to a weaker country W, the opposing nuclear power S suffers heavier casualties, the probability of the nuclear catastrophe P surges, prompting S and S' to start weighing between a nuclear-war scenario and continuation of the proxy war. In this case, the increase of P ramps up the chance that the power S', geographically farther to the spot of conflict, stops supporting W since it is less willing to risk nuclear war and in economic terms, S' may lose more than S if the war escalates.</p>","PeriodicalId":9974,"journal":{"name":"Chaos","volume":"35 6","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144265388","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Discrete-space and -time analog of a super-diffusive fractional Brownian motion.","authors":"Enzo Marinari, Gleb Oshanin","doi":"10.1063/5.0265735","DOIUrl":"https://doi.org/10.1063/5.0265735","url":null,"abstract":"<p><p>We discuss how to construct reliably well \"a lattice and an integer time\" version of super-diffusive continuous-space and -time fractional Brownian motion (fBm)-an experimentally relevant non-Markovian Gaussian stochastic process with an everlasting power-law memory on the time-evolution of thermal noises extending over the entire past. We propose two algorithms, which are both validated by extensive numerical simulations showing that the ensuing lattice random walks have not only the same power-law covariance function as the standard fBm, but also individual trajectories follow those of the super-diffusive fBm. Finding a lattice and an integer time analog of sub-diffusion fBm, which is an anti-persistent process, remains a challenging open problem. Our results also clarify the relevant difference between sub-diffusive and super-diffusive fBm, which are frequently seen as two very analogous realizations of processes with memory. They are indeed substantially different.</p>","PeriodicalId":9974,"journal":{"name":"Chaos","volume":"35 6","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144316000","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}