BMC Medical Informatics and Decision Making最新文献

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Real-world data to support post-market safety and performance of embolization coils: evidence generation from a medical device manufacturer and data institute partnership. 支持栓塞线圈上市后安全性和性能的真实世界数据:从医疗器械制造商和数据机构合作中生成证据。
IF 3.3 3区 医学
BMC Medical Informatics and Decision Making Pub Date : 2024-09-19 DOI: 10.1186/s12911-024-02659-0
Amelia Hochreiter-Hufford, Jennifer Gatz, Amy M Griggs, Ryan D Schoch, Kimberly M Birmingham, Christopher Frederick, John Price, Scott Snyder
{"title":"Real-world data to support post-market safety and performance of embolization coils: evidence generation from a medical device manufacturer and data institute partnership.","authors":"Amelia Hochreiter-Hufford, Jennifer Gatz, Amy M Griggs, Ryan D Schoch, Kimberly M Birmingham, Christopher Frederick, John Price, Scott Snyder","doi":"10.1186/s12911-024-02659-0","DOIUrl":"https://doi.org/10.1186/s12911-024-02659-0","url":null,"abstract":"<p><strong>Background: </strong>Recognizing the limitations of pre-market clinical data, regulatory authorities have embraced total product lifecycle management with post-market surveillance (PMS) data to assess medical device safety and performance. One method of proactive PMS involves the analysis of real-world data (RWD) through retrospective review of electronic health records (EHR). Because EHRs are patient-centered and focused on providing tools that clinicians use to determine care rather than collecting information on individual medical products, the process of transforming RWD into real-world evidence (RWE) can be laborious, particularly for medical devices with broad clinical use and extended clinical follow-up. This study describes a method to extract RWD from EHR to generate RWE on the safety and performance of embolization coils.</p><p><strong>Methods: </strong>Through a partnership between a non-profit data institute and a medical device manufacturer, information on implantable embolization coils' use was extracted, linked, and analyzed from clinical data housed in an electronic data warehouse from the state of Indiana's largest health system. To evaluate the performance and safety of the embolization coils, technical success and safety were defined as per the Society of Interventional Radiology guidelines. A multi-prong strategy including electronic and manual review of unstructured (clinical chart notes) and structured data (International Classification of Disease codes), was developed to identify patients with relevant devices and extract data related to the endpoints.</p><p><strong>Results: </strong>A total of 323 patients were identified as treated using Cook Medical Tornado, Nester, or MReye embolization coils between 1 January 2014 and 31 December 2018. Available clinical follow-up for these patients was 1127 ± 719 days. Indications for use, adverse events, and procedural success rates were identified via automated extraction of structured data along with review of available unstructured data. The overall technical success rate was 96.7%, and the safety events rate was 5.3% with 18 major adverse events in 17 patients. The calculated technical success and safety rates met pre-established performance goals (≥ 85% for technical success and ≤ 12% for safety), highlighting the relevance of this surveillance method.</p><p><strong>Conclusions: </strong>Generating RWE from RWD requires careful planning and execution. The process described herein provided valuable longitudinal data for PMS of real-world device safety and performance. This cost-effective approach can be translated to other medical devices and similar RWD database systems.</p>","PeriodicalId":9340,"journal":{"name":"BMC Medical Informatics and Decision Making","volume":null,"pages":null},"PeriodicalIF":3.3,"publicationDate":"2024-09-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11414114/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142280559","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Development of message passing-based graph convolutional networks for classifying cancer pathology reports 开发用于癌症病理报告分类的基于消息传递的图卷积网络
IF 3.5 3区 医学
BMC Medical Informatics and Decision Making Pub Date : 2024-09-17 DOI: 10.1186/s12911-024-02662-5
Hong-Jun Yoon, Hilda B. Klasky, Andrew E. Blanchard, J. Blair Christian, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer Doherty, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi
{"title":"Development of message passing-based graph convolutional networks for classifying cancer pathology reports","authors":"Hong-Jun Yoon, Hilda B. Klasky, Andrew E. Blanchard, J. Blair Christian, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer Doherty, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi","doi":"10.1186/s12911-024-02662-5","DOIUrl":"https://doi.org/10.1186/s12911-024-02662-5","url":null,"abstract":"Applying graph convolutional networks (GCN) to the classification of free-form natural language texts leveraged by graph-of-words features (TextGCN) was studied and confirmed to be an effective means of describing complex natural language texts. However, the text classification models based on the TextGCN possess weaknesses in terms of memory consumption and model dissemination and distribution. In this paper, we present a fast message passing network (FastMPN), implementing a GCN with message passing architecture that provides versatility and flexibility by allowing trainable node embedding and edge weights, helping the GCN model find the better solution. We applied the FastMPN model to the task of clinical information extraction from cancer pathology reports, extracting the following six properties: main site, subsite, laterality, histology, behavior, and grade. We evaluated the clinical task performance of the FastMPN models in terms of micro- and macro-averaged F1 scores. A comparison was performed with the multi-task convolutional neural network (MT-CNN) model. Results show that the FastMPN model is equivalent to or better than the MT-CNN. Our implementation revealed that our FastMPN model, which is based on the PyTorch platform, can train a large corpus (667,290 training samples) with 202,373 unique words in less than 3 minutes per epoch using one NVIDIA V100 hardware accelerator. Our experiments demonstrated that using this implementation, the clinical task performance scores of information extraction related to tumors from cancer pathology reports were highly competitive.","PeriodicalId":9340,"journal":{"name":"BMC Medical Informatics and Decision Making","volume":null,"pages":null},"PeriodicalIF":3.5,"publicationDate":"2024-09-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142265770","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Machine learning-based evaluation of prognostic factors for mortality and relapse in patients with acute lymphoblastic leukemia: a comparative simulation study 基于机器学习的急性淋巴细胞白血病患者死亡率和复发预后因素评估:一项比较模拟研究
IF 3.5 3区 医学
BMC Medical Informatics and Decision Making Pub Date : 2024-09-16 DOI: 10.1186/s12911-024-02645-6
Zahra Mehrbakhsh, Roghayyeh Hassanzadeh, Nasser Behnampour, Leili Tapak, Ziba Zarrin, Salman Khazaei, Irina Dinu
{"title":"Machine learning-based evaluation of prognostic factors for mortality and relapse in patients with acute lymphoblastic leukemia: a comparative simulation study","authors":"Zahra Mehrbakhsh, Roghayyeh Hassanzadeh, Nasser Behnampour, Leili Tapak, Ziba Zarrin, Salman Khazaei, Irina Dinu","doi":"10.1186/s12911-024-02645-6","DOIUrl":"https://doi.org/10.1186/s12911-024-02645-6","url":null,"abstract":"Predicting mortality and relapse in children with acute lymphoblastic leukemia (ALL) is crucial for effective treatment and follow-up management. ALL is a common and deadly childhood cancer that often relapses after remission. In this study, we aimed to apply and evaluate machine learning-based models for predicting mortality and relapse in pediatric ALL patients. This retrospective cohort study was conducted on 161 children aged less than 16 years with ALL. Survival status (dead/alive) and patient experience of relapse (yes/no) were considered as the outcome variables. Ten machine learning (ML) algorithms were used to predict mortality and relapse. The performance of the algorithms was evaluated by cross-validation and reported as mean sensitivity, specificity, accuracy and area under the curve (AUC). Finally, prognostic factors were identified based on the best algorithms. The mean accuracy of the ML algorithms for prediction of patient mortality ranged from 64 to 74% and for prediction of relapse, it varied from 64 to 84% on test data sets. The mean AUC of the ML algorithms for mortality and relapse was above 64%. The most important prognostic factors for predicting both mortality and relapse were identified as age at diagnosis, hemoglobin and platelets. In addition, significant prognostic factors for predicting mortality included clinical side effects such as splenomegaly, hepatomegaly and lymphadenopathy. Our results showed that artificial neural networks and bagging algorithms outperformed other algorithms in predicting mortality, while boosting and random forest algorithms excelled in predicting relapse in ALL patients across all criteria. These results offer significant clinical insights into the prognostic factors for children with ALL, which can inform treatment decisions and improve patient outcomes.","PeriodicalId":9340,"journal":{"name":"BMC Medical Informatics and Decision Making","volume":null,"pages":null},"PeriodicalIF":3.5,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142265771","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Development and validation of a nomogram for predicting critical respiratory events during early anesthesia recovery in elderly patients 开发并验证用于预测老年患者早期麻醉恢复期间呼吸系统危急事件的提名图
IF 3.5 3区 医学
BMC Medical Informatics and Decision Making Pub Date : 2024-09-16 DOI: 10.1186/s12911-024-02671-4
Jingying Huang, Jin Yang, Haiou Qi, Xin Xu, Yiting Zhu, Miaomiao Xu, Yuting Wang
{"title":"Development and validation of a nomogram for predicting critical respiratory events during early anesthesia recovery in elderly patients","authors":"Jingying Huang, Jin Yang, Haiou Qi, Xin Xu, Yiting Zhu, Miaomiao Xu, Yuting Wang","doi":"10.1186/s12911-024-02671-4","DOIUrl":"https://doi.org/10.1186/s12911-024-02671-4","url":null,"abstract":"Elderly patients undergoing recovery from general anesthesia face a heightened risk of critical respiratory events (CREs). Despite this, there is a notable absence of effective predictive tools tailored to this specific demographic. This study aims to develop and validate a predictive model (nomogram) to address this gap. CREs pose significant risks to elderly patients during the recovery phase from general anesthesia, making it an important issue in perioperative care. With the increasing aging population and the complexity of surgical procedures, it is crucial to develop effective predictive tools to improve patient outcomes and ensure patient safety during post-anesthesia care unit (PACU) recovery. A total of 324 elderly patients who underwent elective general anesthesia in a grade A tertiary hospital from January 2023 to June 2023 were enrolled. Risk factors were identified using least absolute shrinkage and selection operator (LASSO) regression. A multivariate logistic regression model was constructed and represented as a nomogram. Internal validation of the model was performed using Bootstrapping. This study followed the TRIPOD checklist for reporting. The indicators included in the nomogram were frailty, snoring, patient-controlled intravenous analgesia (PCIA), emergency delirium and cough intensity at extubation. The diagnostic performance of the nomogram model was satisfactory, with AUC values of 0.990 and 0.981 for the training set and internal validation set, respectively. The optimal cutoff value was determined to be 0.22, based on a Youden index of 0.911. The F1-score was 0.927, and the MCC was 0.896. The calibration curve, Brier score (0.046), and HL test demonstrated acceptable consistency between the predicted and actual results. DCA revealed high net benefits of the nomogram prediction across all threshold probabilities. This study developed and validated a nomogram to identify elderly patients in the PACU who are at higher risk of CREs. The identified predictive factors included frailty condition, snoring syndrome, PCIA, emergency delirium, and cough intensity at extubation. By identifying patients at higher risk of CREs early on, medical professionals can implement targeted strategies to mitigate the occurrence of complications and provide better postoperative care for elderly patients recovering from general anesthesia.","PeriodicalId":9340,"journal":{"name":"BMC Medical Informatics and Decision Making","volume":null,"pages":null},"PeriodicalIF":3.5,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142265932","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A cross domain access control model for medical consortium based on DBSCAN and penalty function 基于 DBSCAN 和惩罚函数的医疗联合体跨域访问控制模型
IF 3.5 3区 医学
BMC Medical Informatics and Decision Making Pub Date : 2024-09-16 DOI: 10.1186/s12911-024-02638-5
Chuanjia Yao, Rong Jiang, Bin Wu, Pinghui Li, Chenguang Wang
{"title":"A cross domain access control model for medical consortium based on DBSCAN and penalty function","authors":"Chuanjia Yao, Rong Jiang, Bin Wu, Pinghui Li, Chenguang Wang","doi":"10.1186/s12911-024-02638-5","DOIUrl":"https://doi.org/10.1186/s12911-024-02638-5","url":null,"abstract":"Graded diagnosis and treatment, referral, and expert consultations between medical institutions all require cross domain access to patient medical information to support doctors’ treatment decisions, leading to an increase in cross domain access among various medical institutions within the medical consortium. However, patient medical information is sensitive and private, and it is essential to control doctors’ cross domain access to reduce the risk of leakage. Access control is a continuous and long-term process, and it first requires verification of the legitimacy of user identities, while utilizing control policies for selection and management. After verifying user identity and access permissions, it is also necessary to monitor unauthorized operations. Therefore, the content of access control includes authentication, implementation of control policies, and security auditing. Unlike the existing focus on authentication and control strategy implementation in access control, this article focuses on the control based on access log security auditing for doctors who have obtained authorization to access medical resources. This paper designs a blockchain based doctor intelligent cross domain access log recording system, which is used to record, query and analyze the cross domain access behavior of doctors after authorization. Through DBSCAN clustering analysis of doctors’ cross domain access logs, we find the abnormal phenomenon of cross domain access, and build a penalty function to dynamically control doctors’ cross domain access process, so as to reduce the risk of Data breach. Finally, through comparative analysis and experiments, it is shown that the proposed cross domain access control model for medical consortia based on DBSCAN and penalty function has good control effect on the cross domain access behavior of doctors in various medical institutions of the medical consortia, and has certain feasibility for the cross domain access control of doctors.","PeriodicalId":9340,"journal":{"name":"BMC Medical Informatics and Decision Making","volume":null,"pages":null},"PeriodicalIF":3.5,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142265772","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Differences in changes of data completeness after the implementation of an electronic medical record in three surgical departments of a German hospital–a longitudinal comparative document analysis 德国一家医院的三个外科部门实施电子病历后数据完整性变化的差异--纵向对比文件分析
IF 3.5 3区 医学
BMC Medical Informatics and Decision Making Pub Date : 2024-09-16 DOI: 10.1186/s12911-024-02667-0
Florian Wurster, Christin Herrmann, Marina Beckmann, Natalia Cecon-Stabel, Kerstin Dittmer, Till Hansen, Julia Jaschke, Juliane Köberlein-Neu, Mi-Ran Okumu, Holger Pfaff, Carsten Rusniok, Ute Karbach
{"title":"Differences in changes of data completeness after the implementation of an electronic medical record in three surgical departments of a German hospital–a longitudinal comparative document analysis","authors":"Florian Wurster, Christin Herrmann, Marina Beckmann, Natalia Cecon-Stabel, Kerstin Dittmer, Till Hansen, Julia Jaschke, Juliane Köberlein-Neu, Mi-Ran Okumu, Holger Pfaff, Carsten Rusniok, Ute Karbach","doi":"10.1186/s12911-024-02667-0","DOIUrl":"https://doi.org/10.1186/s12911-024-02667-0","url":null,"abstract":"The European health data space promises an efficient environment for research and policy-making. However, this data space is dependent on high data quality. The implementation of electronic medical record systems has a positive impact on data quality, but improvements are not consistent across empirical studies. This study aims to analyze differences in the changes of data quality and to discuss these against distinct stages of the electronic medical record’s adoption process. Paper-based and electronic medical records from three surgical departments were compared, assessing changes in data quality after the implementation of an electronic medical record system. Data quality was operationalized as completeness of documentation. Ten information that must be documented in both record types (e.g. vital signs) were coded as 1 if they were documented, otherwise as 0. Chi-Square-Tests were used to compare percentage completeness of these ten information and t-tests to compare mean completeness per record type. A total of N = 659 records were analyzed. Overall, the average completeness improved in the electronic medical record, with a change from 6.02 (SD = 1.88) to 7.2 (SD = 1.77). At the information level, eight information improved, one deteriorated and one remained unchanged. At the level of departments, changes in data quality show expected differences. The study provides evidence that improvements in data quality could depend on the process how the electronic medical record is adopted in the affected department. Research is needed to further improve data quality through implementing new electronical medical record systems or updating existing ones.","PeriodicalId":9340,"journal":{"name":"BMC Medical Informatics and Decision Making","volume":null,"pages":null},"PeriodicalIF":3.5,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142265931","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Classification of coronary artery disease using radial artery pulse wave analysis via machine learning 通过机器学习利用桡动脉脉搏波分析进行冠状动脉疾病分类
IF 3.5 3区 医学
BMC Medical Informatics and Decision Making Pub Date : 2024-09-16 DOI: 10.1186/s12911-024-02666-1
Yi Lyu, Hai-Mei Wu, Hai-Xia Yan, Rui Guo, Yu-Jie Xiong, Rui Chen, Wen-Yue Huang, Jing Hong, Rong Lyu, Yi-Qin Wang, Jin Xu
{"title":"Classification of coronary artery disease using radial artery pulse wave analysis via machine learning","authors":"Yi Lyu, Hai-Mei Wu, Hai-Xia Yan, Rui Guo, Yu-Jie Xiong, Rui Chen, Wen-Yue Huang, Jing Hong, Rong Lyu, Yi-Qin Wang, Jin Xu","doi":"10.1186/s12911-024-02666-1","DOIUrl":"https://doi.org/10.1186/s12911-024-02666-1","url":null,"abstract":"Coronary artery disease (CAD) is a major global cardiovascular health threat and the leading cause of death in many countries. The disease has a significant impact in China, where it has become the leading cause of death. There is an urgent need to develop non-invasive, rapid, cost-effective, and reliable techniques for the early detection of CAD using machine learning (ML). Six hundred eight participants were divided into three groups: healthy, hypertensive, and CAD. The raw data of pulse wave from those participants was collected. The data were de-noised, normalized, and analyzed using several applications. Seven ML classifiers were used to model the processed data, including Decision Tree (DT), Random Forest (RF), Gradient Boosting Decision Tree (GBDT), Extra Trees (ET), Extreme Gradient Boosting (XGBoost), Light Gradient Boosting (LightGBM), and Unbiased Boosting with Categorical Features (CatBoost). The Extra Trees classifier demonstrated the best classification performance. After tunning, the results performance evaluation on test set are: 0.8579 accuracy, 0.9361 AUC, 0.8561 recall, 0.8581 precision, 0.8571 F1 score, 0.7859 kappa coefficient, and 0.7867 MCC. The top 10 feature importances of ET model are w/t1, t3/tmax, tmax, t3/t1, As, hf/3, tf/3/tmax, tf/5, w and tf/3/t1. Radial artery pulse wave can be used to identify healthy, hypertensive and CAD participants by using Extra Trees Classifier. This method provides a potential pathway to recognize CAD patients by using a simple, non-invasive, and cost-effective technique.","PeriodicalId":9340,"journal":{"name":"BMC Medical Informatics and Decision Making","volume":null,"pages":null},"PeriodicalIF":3.5,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142265933","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
RCC-Supporter: supporting renal cell carcinoma treatment decision-making using machine learning RCC-Supporter:利用机器学习支持肾细胞癌治疗决策
IF 3.5 3区 医学
BMC Medical Informatics and Decision Making Pub Date : 2024-09-16 DOI: 10.1186/s12911-024-02660-7
Won Hoon Song, Meeyoung Park
{"title":"RCC-Supporter: supporting renal cell carcinoma treatment decision-making using machine learning","authors":"Won Hoon Song, Meeyoung Park","doi":"10.1186/s12911-024-02660-7","DOIUrl":"https://doi.org/10.1186/s12911-024-02660-7","url":null,"abstract":"The population diagnosed with renal cell carcinoma, especially in Asia, represents 36.6% of global cases, with the incidence rate of renal cell carcinoma in Korea steadily increasing annually. However, treatment options for renal cell carcinoma are diverse, depending on clinical stage and histologic characteristics. Hence, this study aims to develop a machine learning based clinical decision-support system that recommends personalized treatment tailored to the individual health condition of each patient. We reviewed the real-world medical data of 1,867 participants diagnosed with renal cell carcinoma between November 2008 and June 2021 at the Pusan National University Yangsan Hospital in South Korea. Data were manually divided into a follow-up group where the patients did not undergo surgery or chemotherapy (Surveillance), a group where the patients underwent surgery (Surgery), and a group where the patients received chemotherapy before or after surgery (Chemotherapy). Feature selection was conducted to identify the significant clinical factors influencing renal cell carcinoma treatment decisions from 2,058 features. These features included subsets of 20, 50, 75, 100, and 150, as well as the complete set and an additional 50 expert-selected features. We applied representative machine learning algorithms, namely Decision Tree, Random Forest, and Gradient Boosting Machine (GBM). We analyzed the performance of three applied machine learning algorithms, among which the GBM algorithm achieved an accuracy score of 95% (95% CI, 92–98%) for the 100 and 150 feature sets. The GBM algorithm using 100 and 150 features achieved better performance than the algorithm using features selected by clinical experts (93%, 95% CI 89–97%). We developed a preliminary personalized treatment decision-support system (TDSS) called “RCC-Supporter” by applying machine learning (ML) algorithms to determine personalized treatment for the various clinical situations of RCC patients. Our results demonstrate the feasibility of using machine learning-based clinical decision support systems for treatment decisions in real clinical settings.","PeriodicalId":9340,"journal":{"name":"BMC Medical Informatics and Decision Making","volume":null,"pages":null},"PeriodicalIF":3.5,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142265930","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Enhancing clinical data retrieval with Smart Watchers: a NiFi-based ETL pipeline for Elasticsearch queries 利用智能监视器加强临床数据检索:基于 NiFi 的 ETL 管道用于 Elasticsearch 查询
IF 3.5 3区 医学
BMC Medical Informatics and Decision Making Pub Date : 2024-09-16 DOI: 10.1186/s12911-024-02633-w
Mohammad Al-Agil, Stephen J. Obee, Vlad Dinu, James Teo, David Brawand, Piers E. M. Patten, Anwar Alhaq
{"title":"Enhancing clinical data retrieval with Smart Watchers: a NiFi-based ETL pipeline for Elasticsearch queries","authors":"Mohammad Al-Agil, Stephen J. Obee, Vlad Dinu, James Teo, David Brawand, Piers E. M. Patten, Anwar Alhaq","doi":"10.1186/s12911-024-02633-w","DOIUrl":"https://doi.org/10.1186/s12911-024-02633-w","url":null,"abstract":"The aim is to develop and deploy an automated clinical alert system to enhance patient care and streamline healthcare operations. Structured and unstructured data from multiple sources are used to generate near real-time alerts for specific clinical scenarios, with an additional goal to improve clinical decision-making through accuracy and reliability. The automated clinical alert system, named Smart Watchers, was developed using Apache NiFi and Python scripts to create flexible data processing pipelines and customisable clinical alerts. A comparative analysis between Smart Watchers and the legacy Elastic Watchers was conducted to evaluate performance metrics such as accuracy, reliability, and scalability. The evaluation involved measuring the time taken for manual data extraction through the electronic patient record (EPR) front-end and comparing it with the automated data extraction process using Smart Watchers. Deployment of Smart Watchers showcased a consistent time savings between 90% to 98.67% compared to manual data extraction through the EPR front-end. The results demonstrate the efficiency of Smart Watchers in automating data extraction and alert generation, significantly reducing the time required for these tasks when compared to manual methods in a scalable manner. The research underscores the utility of employing an automated clinical alert system, and its portability facilitated its use across multiple clinical settings. The successful implementation and positive impact of the system lay a foundation for future technological innovations in this rapidly evolving field.","PeriodicalId":9340,"journal":{"name":"BMC Medical Informatics and Decision Making","volume":null,"pages":null},"PeriodicalIF":3.5,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142265935","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Health professionals’ perceptions of electronic health records system: a mixed method study in Ghana 卫生专业人员对电子健康记录系统的看法:加纳的一项混合方法研究
IF 3.5 3区 医学
BMC Medical Informatics and Decision Making Pub Date : 2024-09-16 DOI: 10.1186/s12911-024-02672-3
Nathan Kumasenu Mensah, Godwin Adzakpah, Jonathan Kissi, Kasim Abdulai, Hannah Taylor-Abdulai, Stephen Benyi Johnson, Christabell Opoku, Cephas Hallo, Richard Okyere Boadu
{"title":"Health professionals’ perceptions of electronic health records system: a mixed method study in Ghana","authors":"Nathan Kumasenu Mensah, Godwin Adzakpah, Jonathan Kissi, Kasim Abdulai, Hannah Taylor-Abdulai, Stephen Benyi Johnson, Christabell Opoku, Cephas Hallo, Richard Okyere Boadu","doi":"10.1186/s12911-024-02672-3","DOIUrl":"https://doi.org/10.1186/s12911-024-02672-3","url":null,"abstract":"Electronic Health Record systems (EHRs) offer significant benefits and have transformed healthcare in developed countries. However, their implementation and adoption in low- and middle-income countries (LMICs) remains low due to challenges and competing interests. Health professionals’ perception of EHRs can influence their adoption and continued use. The objectives of this study are to explore the perception of health professionals regarding implemented EHR systems in three hospitals in Ghana and identify factors influencing their perception and satisfaction. In this study, we employed a concurrent mixed method design to collect data from study participants from May to June 2023. The quantitative part employed a descriptive-survey and the qualitative (in-depth interview) techniques was applied. After obtaining written informed consent from each respondent, a structured survey questionnaire was filled out by the health professionals from three hospitals. An a priori power calculation was used to determine the sample size for the quantitative component. Two hundred and sixty-three (263) health professionals completed the questionnaire from the three facilities. A purposive sampling technique was used to select fifteen [1] participants for the interviews. A semi-structured interview guide was used for the in-depth interviews. The interviews were audio recorded, transcribed, and coded into themes using QSR Nvivo 12 software before thematic content analysis. Our findings revealed that 213 (80.99%) health professionals perceived the EHRs as beneficial to patients and were generally satisfied. An overwhelming majority, 197 (74.90%) of the health professionals, were satisfied with its use and expressed interest in continuing to use the system. The majority of health professionals viewed the EHRs to have improved their work and workflow processes and provided the desired results. However, few other health professionals were dissatisfied with the system because they viewed the EHRs as frustrating due to unstable internet connectivity and power supply. Other concerns were related to the privacy and confidentiality of patient information. They believe access to patient information should be on a need-to-know basis, and patient information should not be accessible to all other clinicians except those involved directly in their care processes. The study revealed that health professionals have a positive perception of the implemented EHRs, are highly satisfied with them, and are interested in continuing to use them. However, health professionals’ concerns about the unstable power supply, poor internet connectivity, security, and confidentiality of patient’s information need attention, to mitigate their frustrations and boost their confidence in the system.","PeriodicalId":9340,"journal":{"name":"BMC Medical Informatics and Decision Making","volume":null,"pages":null},"PeriodicalIF":3.5,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142265934","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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