Research ideas and outcomes最新文献

{"title":"WarenstromInfo: a tool for the easy extraction and visualisation of trade flow data","authors":"Octavio Mesa-Varona, Carolina Plaza-Rodríguez, Lars Valentin, Matthias Filter","doi":"10.3897/rio.10.e112227","DOIUrl":"https://doi.org/10.3897/rio.10.e112227","url":null,"abstract":"Epidemiological outbreak investigations often prove to be lengthy and inconclusive due to the time-consuming nature of the currently-used approaches. An alternative approach to address these challenges could involve the application of algorithms to support authorities and food business operators by providing timely, relevant and reliable information. Algorithms, such as gravity models, could be applied as commodity trade models, but they require a large amount of reliable and consistent data on trade for generating projections at international, national or even regional level. Several trade databases, such as UN COMTRADE, EUROSTAT, BACI, CHELEM and GTAP, provide information on trace, albeit with variations in the provided information and in the structure. However, it is worth noting that not all of these databases are freely accessible and data management can pose challenges, hampering the access to the trade data. WarenstromInfo (WI) was created as a software solution that allows easy trade data extraction and visualisation for application in different areas, such as outbreak investigations.\u0000 WarenstromInfo (WI) is an application tool that automatically extracts, decodes and visually displays trade flow data from EUROSTAT \"EU trade since 2002 by statistical procedure, by HS2-4-6 and CN8 (DS-059322)\" (hereinafter referred to EUROSTAT) and the BACI databases, based on user input.\u0000 WI was developed by using the open-source desktop software KNIME Analytics Platform. WI offers the flexibility to be executed either as a web service on a KNIME Web Server infrastructure or as a local resource.\u0000 To integrate the BACI database into WI, the database is annually downloaded as csv files, rebuilt as a SQLite database and hosted locally into the KNIME Web Server Infrastructure. In order to optimise storage space on the KNIME server, this SQLite database specifically includes only agrifood data, reflecting the tool´s focus. However, if new objectives are established, this database can be expanded. Further, data of the SQLite database can be customised by executing the WI workflow locally, enabling the user to expand the database at any time.\u0000 In contrast to BACI, trade data extraction from the EUROSTAT database is performed via the EUROSTAT’s API (Application Programming Interface) applying GET requests and XML data management.\u0000 WI displays four User-friendly Interfaces (UIs) designed with interactive KNIME nodes that facilitate the input of variables. The extracted trade flow data are shown through interactive tables directly within the UIs. This feature enables users to easily explore the data in a structured and user-friendly manner. Additionally, WI incorporates the extracted trade flow data into maps. These maps provide a visual representation of the data, allowing users to gain insights and identify patterns and trends geographically. Both, the data table and the maps, can be downloaded as a single Excel file (containing multiple preformatted tables) and ","PeriodicalId":92718,"journal":{"name":"Research ideas and outcomes","volume":"52 9","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139798234","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Introducing Hypothesis Descriptions","authors":"D. Mietchen, J. Jeschke, Tina Heger","doi":"10.3897/rio.10.e119805","DOIUrl":"https://doi.org/10.3897/rio.10.e119805","url":null,"abstract":"Hypotheses play a central role in the scientific process, yet the way they are introduced often leaves much room for interpretation, which makes it difficult to use them later on: to study and test them, to delineate their scope and to explore the relationships they have to other hypotheses or concepts, to datasets, methodologies or other resources. Here, we introduce a new article type in RIO that is dedicated to them: Hypothesis Descriptions. Such articles combine a specific verbal definition of a hypothesis with a concise description of its components and provide pointers to prior work as well as alignments with formal ways of knowledge representation, optionally including relevant nanopublications. With this format, we aim to facilitate the study of hypotheses in and of themselves, to improve their testability along with the documentation and interpretability of such tests, and to stimulate efforts towards standardization and automation in this space.","PeriodicalId":92718,"journal":{"name":"Research ideas and outcomes","volume":"27 10","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139684677","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Hypothesis Description: Enemy Release Hypothesis","authors":"Tina Heger, Jonathan Jeschke, Maud Bernard‐Verdier, Camille Musseau, D. Mietchen","doi":"10.3897/rio.10.e107393","DOIUrl":"https://doi.org/10.3897/rio.10.e107393","url":null,"abstract":"This paper provides a brief overview of a major hypothesis in invasion biology: the enemy release hypothesis. Building on a summary of different previous definitions, we provide the following revised definition: “A reduced pressure by enemies in the non-native range contributes to invasion success.” Further, we suggest formalizing the hypothesis in the basic form ‘subject - relationship - object’ to allow for disambiguating the different existing meanings and enhancing their usability by machines.","PeriodicalId":92718,"journal":{"name":"Research ideas and outcomes","volume":"63 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139874658","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Template for a Hypothesis Description paper","authors":"Tina Heger, D. Mietchen, J. Jeschke","doi":"10.3897/rio.10.e119808","DOIUrl":"https://doi.org/10.3897/rio.10.e119808","url":null,"abstract":"Hypothesis Descriptions are a type of manuscript dedicated to the formal description of a hypothesis, as introduced in an accompanying editorial and an examplary Hypothesis Description for the Enemy Release Hypothesis that is used in invasion biology. This questionnaire provides a template for such a Hypothesis Description manuscript. The template's format was designed for simplicity to facilitate adoption, and it can be easily extended to capture additional information, e.g. instructions for falsification or generalization, taxonomic or geographic scope, etymology, or relevant information in other research fields or other languages. The template reflects the recommended structure for a Hypothesis Description manuscript in that each of its sections provides the title for a section in a Hypothesis Description manuscript and indicates whether that section is mandatory or optional. Four sections - Keywords (mandatory), Conflicts of interest (optional), Acknowledgments (optional) and References (mandatory) - are in this template filled in for the template itself but should otherwise be adjusted for the hypothesis at hand. Comments to guide authors who work on a Hypothesis Description manuscript are provided as well.","PeriodicalId":92718,"journal":{"name":"Research ideas and outcomes","volume":"44 17","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139688069","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Hypothesis Description: Enemy Release Hypothesis","authors":"Tina Heger, Jonathan Jeschke, Maud Bernard‐Verdier, Camille Musseau, D. Mietchen","doi":"10.3897/rio.10.e107393","DOIUrl":"https://doi.org/10.3897/rio.10.e107393","url":null,"abstract":"This paper provides a brief overview of a major hypothesis in invasion biology: the enemy release hypothesis. Building on a summary of different previous definitions, we provide the following revised definition: “A reduced pressure by enemies in the non-native range contributes to invasion success.” Further, we suggest formalizing the hypothesis in the basic form ‘subject - relationship - object’ to allow for disambiguating the different existing meanings and enhancing their usability by machines.","PeriodicalId":92718,"journal":{"name":"Research ideas and outcomes","volume":"9 3","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139814490","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Predictive modelling of total operating room time for Laparoscopic Cholecystectomy using pre-operatively known indicators to guide accurate surgical scheduling in a critical access hospital","authors":"Todd Prier, Kelly Yale-Suda, Hailey Westover, Ryan Corey","doi":"10.3897/rio.10.e115511","DOIUrl":"https://doi.org/10.3897/rio.10.e115511","url":null,"abstract":"The financial margin of rural and critical access hospitals highly depends on their surgical volume. An efficient operating room is necessary to maximise profit and minimise financial loss. OR utilisation is a crucial OR efficiency metric requiring accurate case duration estimates. The patient's age, ASA, BMI, Mallampati score, previous surgery, the planned surgery, the surgeon, the assistant's level of experience and the severity of the patient's disease are also associated with operative duration. Although complex machine-learning models are accurate in operative prediction, they are not always available in resource-limited hospitals. Laparoscopic cholecystectomy (LC) is one of the most common surgical procedures performed and is one of the few procedures performed at critical access and rural hospitals. The accurate estimation of the operative duration of LC is essential for efficient OR utilisation. We hypothesise that a multivariate linear regression prediction model can be constructed from a set of pre-operatively known, easily collected variables to maximise OR utilisation and improve operative scheduling accuracy for LC. We further hypothesise that this model can be implemented in resource-limited environments, such as critical access hospitals.","PeriodicalId":92718,"journal":{"name":"Research ideas and outcomes","volume":" 6","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-01-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139621594","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Permits, contracts and their terms for biodiversity specimens","authors":"Edmund Schiller, Karin Wiltschke-Schrotta, Eva Häffner, J. Buschbom, F. Leliaert, Breda M Zimkus, John Dickie, Suzete Gomes, Chris Lyal, Daniel Mulcahy, Alan Paton, Gabi Droege","doi":"10.3897/rio.10.e114366","DOIUrl":"https://doi.org/10.3897/rio.10.e114366","url":null,"abstract":"We present two different typologies of legal/contractual information in the context of natural history objects: the Biodiversity Permit/Contract Typology categorises permits and contracts, and the Typology of Legal/Contractual Terms for Biodiversity Specimens categorises the terms within permits and contracts. The Typologies have been developed under the EU-funded SYNTHESYS+ project with the participation of experts from outside the consortium. The document further addresses a possible technical integration of these typologies into the Distributed System of Scientific Collections (DiSSCo). The implementation in the DiSSCo data model is outlined and a concrete use case is presented to show how conditions, e.g. the Typology of Legal/Contractual Terms, can be introduced into the DiSSCo Electronic Loans and Visits System (ElViS). Finally, we give an outlook on the next steps to develop the typologies into a standard that supports compliance with legal and contractual obligations within the wider community of natural science collections.","PeriodicalId":92718,"journal":{"name":"Research ideas and outcomes","volume":"82 8","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-01-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139440443","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"A report on recommendations for the most suitable financial contribution model for the Distributed System of Scientific Collections Research Infrastructure (DiSSCo-RI)","authors":"Salomé Landel, G. Lymer, Markus Pasterk, Michel Guiraud, Katharine Worley","doi":"10.3897/rio.10.e117217","DOIUrl":"https://doi.org/10.3897/rio.10.e117217","url":null,"abstract":"A key consideration during the preparatory phase project DiSSCo Prepare – which laid the foundations for the future Research Infrastructure DiSSCo (Distributed System of Scientific Collections) – was the need to establish a small number of alternative viable financial contribution models and a scalable formula which could be presented to potential funders, with a view to obtaining the minimum financial contribution necessary for DiSSCo to operate, as well as considering how the RI could grow with increased national funding.\u0000 This report briefly explains the ERIC funding framework – as chosen for DiSSCo – and its legal constraints, in order to explain the key role played by national member contributions in the viability of an ERIC. An essential annex of the statutes that will be signed by all members of the ERIC is the member fee calculation. A proposal for the DiSSCo member fee calculation is set out in this document and is based on three main indicators: economic power (GDP), annual spending in research and development and population size. In the context of DiSSCo – and to ensure the ERIC can function – these indicators are connected to a fixed baseline fee of €50,000, in order to guarantee a minimum significant annual contribution from each participating country and avoid contributions that will be more expensive to manage than to benefit from. This baseline is multiplied by contribution factors which propose different ways to weight the various indicators.\u0000 The method is established on an ideal scenario, whereby all 27 EU members, as well as the UK, Iceland, Norway and Switzerland sign the DiSSCo statutes and agree to the proposed member contribution calculation, amounting to €4.5 million for the annual budget of the ERIC. This scenario remains highly unlikely; therefore, a scaled approach has been envisaged, meaning the initial engagement of some countries will allow DiSSCo to begin its operation and implement its business strategy, whilst the growth of the ERIC and its activities is likely to evolve proportionally to the number of national members it is able to engage.\u0000 This report also looks at the ways in which funding could be distributed amongst the DiSSCo members in order to implement decentralised services.","PeriodicalId":92718,"journal":{"name":"Research ideas and outcomes","volume":"1 2","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-01-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139441431","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"DiSSCo Transition Abridged Grant Proposal","authors":"D. Koureas, Laurence Livermore, W. Addink, Eva Alonso, Jose Alonso, Ana Casino, François Dusoulier, Vânia Ferreira, Jonas Grieb, Q. Groom, Sharif Islam, U. Kõljalg, G. Lymer, Karol Marhold, Carole Paleco, Stefaan Pijls, Serge Scory, Ben Scott, Claus Weiland, Katharine Worley","doi":"10.3897/rio.10.e118241","DOIUrl":"https://doi.org/10.3897/rio.10.e118241","url":null,"abstract":"The Distributed System of Scientific Collections (DiSSCo) is a pan-European Research Infrastructure (RI) initiative. DiSSCo aims to bring together natural science collections from 175 museums, botanical gardens, universities and research institutes across 23 countries in a distributed infrastructure that makes these collections physically and digitally open and accessible for all forms of research and innovation. DiSSCo RI entered the ESFRI roadmap in 2018 and successfully concluded its Preparatory Phase in early 2023. The RI is now transitioning towards the constitution of its legal entity (an ERIC) and the start of its scaled-up construction (implementation) programme. This publication is an abridged version of the successful grant proposal for the DiSSCo Transition Project which has the goal of ensuring the seamless transition of the DiSSCo RI from its Preparatory Phase to the Construction Phase (expected to start in 2025). In this transition period, the Project will address five objectives building on the outcomes of the Preparatory Phase project:\u0000 1) Advance the DiSSCo ERIC process and complete its policy framework, ensuring the smooth early-phase Implementation of DISSCo;\u0000 2) Engage & support DiSSCo National Nodes to strengthen national commitments;\u0000 3) Advance the development of core e-services to avoid the accumulation of technical debt before the start of the Implementation Phase;\u0000 4) Continue international collaboration on standards & best practices needed for the DiSSCo service provision; and\u0000 5) Continue supporting DiSSCo RI interim governance bodies and transition them to the DiSSCo ERIC formal governance.\u0000 The Project’s impact will be measured against the increase in the RI's overall Implementation Readiness Level (IRL). More specifically, we will monitor its impact towards reaching the required level of maturity in four of the five dimensions of the IRL that can benefit from further developments. These include the organisational, financial, technological and data readiness levels.","PeriodicalId":92718,"journal":{"name":"Research ideas and outcomes","volume":"57 36","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-01-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139447192","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Whose Ocean? Exploring multidisciplinary perspectives towards ocean sustainability and implications for the un(der)represented","authors":"Kiara Lasch, Sabine Gollner, Alex Oude Elferink, S. Rühs, F. Sangiorgi, E. van Sebille, Junjie Wang","doi":"10.3897/rio.10.e114485","DOIUrl":"https://doi.org/10.3897/rio.10.e114485","url":null,"abstract":"The ocean's significance encompasses crucial ecosystem services including climate regulation, oxygen production and food supply. The ocean is also a major player in the global economy. However, human activities continue to harm the ocean, jeopardising these vital functions. In July 2022, the United Nations Ocean Conference adopted a political declaration entitled \"Our ocean, our future, our responsibility,\" emphasising the need for sustainable ocean management and protection. However, an important initial question arises: who are the “Our”? or, rephrased “Whose ocean” is it? This study presents first answers to this question, based on interviews with ocean professionals from diverse backgrounds. Their responses showcased the complexity of the issue, with differing opinions on ocean “ownership” and “control”. Despite the diversity of perspectives, a shared emphasis emerged: shifting from profit-driven decision-making to prioritising marine ecosystem health. Proposed approaches to build a sustainable relationship between people and the ocean include promoting ocean literacy and marine research and ensuring global accountability. These voices offered valuable insights towards ocean sustainability, guiding future academic, educational and policy-making efforts.","PeriodicalId":92718,"journal":{"name":"Research ideas and outcomes","volume":"38 24","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-01-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139390160","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}