{"title":"Registration by Regression (RbR): a framework for interpretable and flexible atlas registration.","authors":"Karthik Gopinath, Xiaoling Hu, Malte Hoffmann, Oula Puonti, Juan Eugenio Iglesias","doi":"10.1007/978-3-031-73480-9_16","DOIUrl":"https://doi.org/10.1007/978-3-031-73480-9_16","url":null,"abstract":"<p><p>In human neuroimaging studies, atlas registration enables mapping MRI scans to a common coordinate frame, which is necessary to aggregate data from multiple subjects. Machine learning registration methods have achieved excellent speed and accuracy but lack interpretability and flexibility at test time (since their deformation model is fixed). More recently, keypoint-based methods have been proposed to tackle these issues, but their accuracy is still subpar, particularly when fitting nonlinear transforms. Here we propose Registration by Regression (RbR), a novel atlas registration framework that: is highly robust and flexible; can be trained with cheaply obtained data; and operates on a single channel, such that it can also be used as pretraining for other tasks. RbR predicts the (<i>x, y, z</i>) atlas coordinates for every voxel of the input scan (i.e., every voxel is a keypoint), and then uses closed-form expressions to quickly fit transforms using a wide array of possible deformation models, including affine and nonlinear (e.g., Bspline, Demons, invertible diffeomorphic models, etc.). Robustness is provided by the large number of voxels informing the registration and can be further increased by robust estimators like RANSAC. Experiments on independent public datasets show that RbR yields more accurate registration than competing keypoint approaches, over a wide range of deformation models.</p>","PeriodicalId":90799,"journal":{"name":"Biomedical image registration, ... proceedings. WBIR (Workshop : 2006- )","volume":"15249 ","pages":"205-215"},"PeriodicalIF":0.0,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12380105/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144981992","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Alena Uus, Maximilian Pietsch, I. Grigorescu, Daan Christiaens, J. Tournier, Lucilio Cordero-Grande, J. Hutter, A. Edwards, J. Hajnal, M. Deprez
{"title":"Multi-channel Registration for Diffusion MRI: Longitudinal Analysis for the Neonatal Brain","authors":"Alena Uus, Maximilian Pietsch, I. Grigorescu, Daan Christiaens, J. Tournier, Lucilio Cordero-Grande, J. Hutter, A. Edwards, J. Hajnal, M. Deprez","doi":"10.1007/978-3-030-50120-4_11","DOIUrl":"https://doi.org/10.1007/978-3-030-50120-4_11","url":null,"abstract":"","PeriodicalId":90799,"journal":{"name":"Biomedical image registration, ... proceedings. WBIR (Workshop : 2006- )","volume":"1 1","pages":"111 - 121"},"PeriodicalIF":0.0,"publicationDate":"2020-05-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"82292941","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
F. Lange, Stephen M. Smith, M. Bertelsen, A. Khrapitchev, P. Manger, R. Mars, J. Andersson
{"title":"Multimodal MRI Template Creation in the Ring-Tailed Lemur and Rhesus Macaque","authors":"F. Lange, Stephen M. Smith, M. Bertelsen, A. Khrapitchev, P. Manger, R. Mars, J. Andersson","doi":"10.1007/978-3-030-50120-4_14","DOIUrl":"https://doi.org/10.1007/978-3-030-50120-4_14","url":null,"abstract":"","PeriodicalId":90799,"journal":{"name":"Biomedical image registration, ... proceedings. WBIR (Workshop : 2006- )","volume":"124 1","pages":"141 - 150"},"PeriodicalIF":0.0,"publicationDate":"2020-05-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"86289591","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Diana Waldmannstetter, F. Navarro, B. Wiestler, J. Kirschke, A. Sekuboyina, Ester Molero, Bjoern H Menze
{"title":"Reinforced Redetection of Landmark in Pre- and Post-operative Brain Scan Using Anatomical Guidance for Image Alignment","authors":"Diana Waldmannstetter, F. Navarro, B. Wiestler, J. Kirschke, A. Sekuboyina, Ester Molero, Bjoern H Menze","doi":"10.1007/978-3-030-50120-4_8","DOIUrl":"https://doi.org/10.1007/978-3-030-50120-4_8","url":null,"abstract":"","PeriodicalId":90799,"journal":{"name":"Biomedical image registration, ... proceedings. WBIR (Workshop : 2006- )","volume":"48 1","pages":"81 - 90"},"PeriodicalIF":0.0,"publicationDate":"2020-05-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"88125756","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
H. Breman, J. Mulders, Levin Fritz, J. Peters, John A. Pyles, J. Eck, M. Bastiani, A. Roebroeck, J. Ashburner, R. Goebel
{"title":"An Image Registration-Based Method for EPI Distortion Correction Based on Opposite Phase Encoding (COPE)","authors":"H. Breman, J. Mulders, Levin Fritz, J. Peters, John A. Pyles, J. Eck, M. Bastiani, A. Roebroeck, J. Ashburner, R. Goebel","doi":"10.1007/978-3-030-50120-4_12","DOIUrl":"https://doi.org/10.1007/978-3-030-50120-4_12","url":null,"abstract":"","PeriodicalId":90799,"journal":{"name":"Biomedical image registration, ... proceedings. WBIR (Workshop : 2006- )","volume":"16 1","pages":"122 - 130"},"PeriodicalIF":0.0,"publicationDate":"2020-05-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"73965835","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}