BMC Medical Genetics最新文献

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Next generation sequencing of RB1gene for the molecular diagnosis of ethnic minority with retinoblastoma in Yunnan. 下一代rb1基因测序在云南少数民族视网膜母细胞瘤分子诊断中的应用。
4区 医学
BMC Medical Genetics Pub Date : 2020-11-23 DOI: 10.1186/s12881-020-01150-7
Zhen Zhang, Yi-Shuang Xiao, Ru Shen, Hong-Chao Jiang, Li Tan, Ren-Qiu Li, Xiao-Hong Yang, Huai-Yu Gu, Wen-Ji He, Jing Ma
{"title":"Next generation sequencing of RB1gene for the molecular diagnosis of ethnic minority with retinoblastoma in Yunnan.","authors":"Zhen Zhang,&nbsp;Yi-Shuang Xiao,&nbsp;Ru Shen,&nbsp;Hong-Chao Jiang,&nbsp;Li Tan,&nbsp;Ren-Qiu Li,&nbsp;Xiao-Hong Yang,&nbsp;Huai-Yu Gu,&nbsp;Wen-Ji He,&nbsp;Jing Ma","doi":"10.1186/s12881-020-01150-7","DOIUrl":"https://doi.org/10.1186/s12881-020-01150-7","url":null,"abstract":"<p><strong>Background: </strong>Retinoblastoma is a rare intraocular malignancy and typically initiated by inactivating biallelic mutations of RB1 gene. Each year, ~ 8000 children worldwide are diagnosed for retinoblastoma. In high-income countries, patient survival is over 95% while low-income countries is ~ 30%.If disease is diagnosed early and treated in centers specializing in retinoblastoma, the survival might exceed 95% and many eyes could be safely treated and support a lifetime of good vision. In China, approximate 1100 newly diagnosed cases are expected annually and 28 hospitals covering 25 provinces established centers classified by expertise and resources for better treatment options and follow-up. Comparing with other province of eastern China, Yunnan province is remote geographically. This might result that healthcare staff have low awareness of the role of genetic testing in management and screening in families.</p><p><strong>Methods: </strong>The patients with retinoblastoma were selected in Yunnan. DNA from blood was used for targeted gene sequencing. Then, an in-house bioinformatics pipeline was done to detect both single nucleotide variants and small insertions/deletions. The pathogenic mutations were identified and further confirmed by conventional methods and cosegregation in families.</p><p><strong>Results: </strong>Using our approach, targeted next generation sequencing was used to detect the mutation of these 12 probands. Bioinformatic predictions showed that nine mutations were found in our study and four were novel pathogenic variants in these nine mutations.</p><p><strong>Conclusions: </strong>It's the first report to describe RB1 mutations in Yunnan children with retinoblastoma. This study would improve role of genetic testing for management and family screening.</p>","PeriodicalId":9015,"journal":{"name":"BMC Medical Genetics","volume":" ","pages":"230"},"PeriodicalIF":0.0,"publicationDate":"2020-11-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s12881-020-01150-7","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38632250","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Incidence of Huntington disease in a northeastern Spanish region: a 13-year retrospective study at tertiary care centre. 西班牙东北部地区亨廷顿病的发病率:三级保健中心的13年回顾性研究。
4区 医学
BMC Medical Genetics Pub Date : 2020-11-23 DOI: 10.1186/s12881-020-01174-z
Paula Sienes Bailo, Raquel Lahoz, Juan Pelegrín Sánchez Marín, Silvia Izquierdo Álvarez
{"title":"Incidence of Huntington disease in a northeastern Spanish region: a 13-year retrospective study at tertiary care centre.","authors":"Paula Sienes Bailo,&nbsp;Raquel Lahoz,&nbsp;Juan Pelegrín Sánchez Marín,&nbsp;Silvia Izquierdo Álvarez","doi":"10.1186/s12881-020-01174-z","DOIUrl":"https://doi.org/10.1186/s12881-020-01174-z","url":null,"abstract":"<p><strong>Background: </strong>Despite the progress in the knowledge of Huntington disease (HD) in recent years, the epidemiology continues uncertain, so the study of incidence becomes relevant. This is important since various factors (type of population, diagnostic criteria, disease-modifying factors, etc.) make these data highly variable. Therefore, the genetic diagnosis of these patients is important, since it unequivocally allows the detection of new cases.</p><p><strong>Methods: </strong>Descriptive retrospective study with 179 individuals. Incidence of HD was calculated from the ratio of number of symptomatic cases newly diagnosed per 100,000 inhabitants per year during the period 2007-2019 in Aragon (Spain).</p><p><strong>Results: </strong>50 (27.9%) incident cases of HD (CAG repeat length ≥ 36) were identified from a total of 179 persons studied. The remaining 129/179 (72.1%) were HD negative (CAG repeat length < 36). 29 (58.0%) females and 21 (42.0%) males were confirmed as HD cases. The overall incidence was 0.648 per 100,000 patient-years. 11/50 positive HD cases (22.0%) were identified by performing a predictive test, without clinical symptoms. The minimum number of CAG repeats found was 9 and the most common CAG length among HD negative individuals was 16.</p><p><strong>Conclusions: </strong>Our incidence lied within the range reported for other Caucasian populations. Implementation of new techniques has allowed to determine the exact number of CAG repeats, which is especially important in patients with triplet expansions in an HD intermediate and/or incomplete penetrance allele, both in diagnostic, predictive and prenatal tests.</p>","PeriodicalId":9015,"journal":{"name":"BMC Medical Genetics","volume":" ","pages":"233"},"PeriodicalIF":0.0,"publicationDate":"2020-11-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s12881-020-01174-z","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38633867","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Interleukin-4 gene polymorphism (C33T) and the risk of the asthma: a meta-analysis based on 24 publications. 白细胞介素-4 基因多态性(C33T)与哮喘风险:基于 24 篇出版物的荟萃分析。
4区 医学
BMC Medical Genetics Pub Date : 2020-11-23 DOI: 10.1186/s12881-020-01169-w
Danyal Imani, Mohammad Masoud Eslami, Gholamreza Anani-Sarab, Mansur Aliyu, Bahman Razi, Ramazan Rezaei
{"title":"Interleukin-4 gene polymorphism (C33T) and the risk of the asthma: a meta-analysis based on 24 publications.","authors":"Danyal Imani, Mohammad Masoud Eslami, Gholamreza Anani-Sarab, Mansur Aliyu, Bahman Razi, Ramazan Rezaei","doi":"10.1186/s12881-020-01169-w","DOIUrl":"10.1186/s12881-020-01169-w","url":null,"abstract":"<p><strong>Background: </strong>Previous studies evaluated the association of IL-4 C33T polymorphism and risk of bronchial asthma but failed to establish a consistent conclusive association. In the present meta-analysis, we intend to define a more reliable estimate of the association in the presence of filling published literature.</p><p><strong>Methods: </strong>An exhaustive search in Web of Science, Scopus, and PubMed databases was performed to identify all relevant publications before September 2020, and 24 publications (28 studies) with 6587 cases and 8408 controls were included in final analysis. The association between polymorphism and risk of asthma were measured by Odd ratios (ORs) and 95% confidence intervals (CIs). Moreover, Cochran's Q and the I<sup>2</sup> statistics were used to evaluate the degree of heterogeneity between studies.</p><p><strong>Results: </strong>In the overall study populations, a significant positive association was detected under all genotype models and announced the IL-4 C33T polymorphism as a potential risk factor in the pathogenesis of asthma. In the subgroup analysis by age, a significant association between IL-4 C33T polymorphism and risk of asthma in different age groups was identified in allelic model, which highlighted the predisposing role of the T allele for the asthma risk in all three age groups. Furthermore, the results of subgroup analysis by continent were heterogenous. Accordingly, IL-4 C33T polymorphism was a risk factor in Europeans (all models except heterozygote comparison), Americans (all models except recessive and homozygote comparison) and Asians (just recessive and allelic model). Finally, the ethnicity-specific analysis disclosed a significant association between IL-4 C33T polymorphism and asthma risk in Caucasians (all genotype models except heterozygote comparison), while this association was not significant in African-Americans.</p><p><strong>Conclusions: </strong>This study suggests that IL-4 C33T polymorphism potentially acts as a risk factor for asthma in different ethnicities and age groups.</p>","PeriodicalId":9015,"journal":{"name":"BMC Medical Genetics","volume":" ","pages":"232"},"PeriodicalIF":0.0,"publicationDate":"2020-11-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7686752/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38644654","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Characterization of an N-terminal Nav1.5 channel variant - a potential risk factor for arrhythmias and sudden death? n端Nav1.5通道变异的特征——心律失常和猝死的潜在危险因素?
4区 医学
BMC Medical Genetics Pub Date : 2020-11-19 DOI: 10.1186/s12881-020-01170-3
Stefanie Scheiper-Welling, Paolo Zuccolini, Oliver Rauh, Britt-Maria Beckmann, Christof Geisen, Anna Moroni, Gerhard Thiel, Silke Kauferstein
{"title":"Characterization of an N-terminal Na<sub>v</sub>1.5 channel variant - a potential risk factor for arrhythmias and sudden death?","authors":"Stefanie Scheiper-Welling,&nbsp;Paolo Zuccolini,&nbsp;Oliver Rauh,&nbsp;Britt-Maria Beckmann,&nbsp;Christof Geisen,&nbsp;Anna Moroni,&nbsp;Gerhard Thiel,&nbsp;Silke Kauferstein","doi":"10.1186/s12881-020-01170-3","DOIUrl":"https://doi.org/10.1186/s12881-020-01170-3","url":null,"abstract":"<p><strong>Background: </strong>Alterations in the SCN5A gene encoding the cardiac sodium channel Na<sub>v</sub>1.5 have been linked to a number of arrhythmia syndromes and diseases including long-QT syndrome (LQTS), Brugada syndrome (BrS) and dilative cardiomyopathy (DCM), which may predispose to fatal arrhythmias and sudden death. We identified the heterozygous variant c.316A > G, p.(Ser106Gly) in a 35-year-old patient with survived cardiac arrest. In the present study, we aimed to investigate the functional impact of the variant to clarify the medical relevance.</p><p><strong>Methods: </strong>Mutant as well as wild type GFP tagged Na<sub>v</sub>1.5 channels were expressed in HEK293 cells. We performed functional characterization experiments using patch-clamp technique.</p><p><strong>Results: </strong>Electrophysiological measurements indicated, that the detected missense variant alters Nav1.5 channel functionality leading to a gain-of-function effect. Cells expressing S106G channels show an increase in Na<sub>v</sub>1.5 current over the entire voltage window.</p><p><strong>Conclusion: </strong>The results support the assumption that the detected sequence aberration alters Na<sub>v</sub>1.5 channel function and may predispose to cardiac arrhythmias and sudden cardiac death.</p>","PeriodicalId":9015,"journal":{"name":"BMC Medical Genetics","volume":" ","pages":"227"},"PeriodicalIF":0.0,"publicationDate":"2020-11-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s12881-020-01170-3","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38621120","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Overwhelming sepsis in a neonate affected by Zellweger syndrome due to a compound heterozygosis in PEX 6 gene: a case report. 由于pex6基因复合杂合导致的齐薇格综合征新生儿压倒性败血症:1例报告。
4区 医学
BMC Medical Genetics Pub Date : 2020-11-19 DOI: 10.1186/s12881-020-01175-y
Laura Lucaccioni, Beatrice Righi, Greta Miriam Cingolani, Licia Lugli, Elisa Della Casa, Francesco Torcetta, Lorenzo Iughetti, Alberto Berardi
{"title":"Overwhelming sepsis in a neonate affected by Zellweger syndrome due to a compound heterozygosis in PEX 6 gene: a case report.","authors":"Laura Lucaccioni,&nbsp;Beatrice Righi,&nbsp;Greta Miriam Cingolani,&nbsp;Licia Lugli,&nbsp;Elisa Della Casa,&nbsp;Francesco Torcetta,&nbsp;Lorenzo Iughetti,&nbsp;Alberto Berardi","doi":"10.1186/s12881-020-01175-y","DOIUrl":"https://doi.org/10.1186/s12881-020-01175-y","url":null,"abstract":"<p><strong>Background: </strong>Peroxisome biogenesis disorders (PBDs) are a group of metabolic diseases caused by dysfunction of peroxisomes. Different forms of PBDs are described; the most severe one is the Zellweger syndrome (ZS). We report on an unusual presentation of Zellweger syndrome manifesting in a newborn with severe and fulminant sepsis, causing death during the neonatal period.</p><p><strong>Case presentation: </strong>A term male Caucasian neonate presented at birth with hypotonia and poor feeding associated with dysmorphic craniofacial features and skeletal abnormalities. Blood tests showed progressive leukopenia; ultrasounds revealed cerebral and renal abnormalities. He died on the fourth day of life because of an irreversible Gram-negative sepsis. Post-mortem tests on blood and urine samples showed biochemical alterations suggestive of ZS confirmed by genetic test.</p><p><strong>Conclusions: </strong>ZS is an early and severe forms of PBDs. Peroxisomes are known to be involved in lipid metabolism, but recent studies suggest their fundamental role in modulating immune response and inflammation. In case of clinical suspicion of ZS it is important to focus the attention on the prevention and management of infections that can rapidly progress to death.</p>","PeriodicalId":9015,"journal":{"name":"BMC Medical Genetics","volume":" ","pages":"229"},"PeriodicalIF":0.0,"publicationDate":"2020-11-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s12881-020-01175-y","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38621127","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 6
Mediation by differential DNA methylation of known associations between single nucleotide polymorphisms and bladder cancer risk. 单核苷酸多态性与膀胱癌风险之间已知关联的差异DNA甲基化介导。
4区 医学
BMC Medical Genetics Pub Date : 2020-11-19 DOI: 10.1186/s12881-020-01172-1
Kristina M Jordahl, Amanda I Phipps, Timothy W Randolph, Lesley F Tinker, Rami Nassir, Lifang Hou, Garnet L Anderson, Karl T Kelsey, Emily White, Parveen Bhatti
{"title":"Mediation by differential DNA methylation of known associations between single nucleotide polymorphisms and bladder cancer risk.","authors":"Kristina M Jordahl, Amanda I Phipps, Timothy W Randolph, Lesley F Tinker, Rami Nassir, Lifang Hou, Garnet L Anderson, Karl T Kelsey, Emily White, Parveen Bhatti","doi":"10.1186/s12881-020-01172-1","DOIUrl":"10.1186/s12881-020-01172-1","url":null,"abstract":"<p><strong>Background: </strong>Though bladder cancer has been the subject of many well-powered genome-wide association studies, the mechanisms involving bladder-cancer-associated single nucleotide polymorphisms (SNPs) remain largely unknown. This study focuses on rs798766, rs401681, rs2294008, and rs8102137, which have been associated with bladder cancer and are also cis-acting methylation quantitative loci (mQTL).</p><p><strong>Methods: </strong>Among 412 bladder cancer cases and 424 controls from the Women's Health Initiative (WHI), we assessed whether the effects of these SNPs on bladder cancer are mediated through proximal DNA methylation changes in pre-diagnostic blood at mQTL-associated CpG sites, which we refer to as natural indirect effects (NIEs). We used a multiple-mediator mediation model for each of the four mQTL adjusted for matching variables and potential confounders, including race/ethnicity, smoking status, and pack-years of smoking.</p><p><strong>Results: </strong>While not statistically significant, our results suggest that substantial proportions of the modest effects of rs401681 (OR<sup>NIE</sup> = 1.05, 95% confidence interval (CI) = 0.89 to 1.25; NIE percent = 98.5%) and rs2294008 (OR<sup>NIE</sup> = 1.10, 95% CI = 0.90 to 1.33; NIE percent = 77.6%) on bladder cancer risk are mediated through differential DNA methylation at nearby mQTL-associated CpG sites. The suggestive results indicate that rs2294008 may affect bladder cancer risk through a set of genes in the lymphocyte antigen 6 family, which involves genes that bind to and modulate nicotinic acetylcholine receptors. There was no suggestive evidence supporting mediation for rs8102137 and rs798766.</p><p><strong>Conclusions: </strong>Though larger studies are necessary, the methylation changes associated with rs401681 and rs2294008 at mQTL-associated CpG sites may be relevant for bladder carcinogenesis, and this study demonstrates how multi-omic data can be integrated to help understand the downstream effects of genetics variants.</p>","PeriodicalId":9015,"journal":{"name":"BMC Medical Genetics","volume":" ","pages":"228"},"PeriodicalIF":0.0,"publicationDate":"2020-11-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7678190/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38631658","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Wilson disease, ABCC2 c.3972C > T polymorphism and primary liver cancers: suggestions from a familial cluster. Wilson病、ABCC2 c.3972C > T多态性与原发性肝癌:来自家族聚类的建议
4区 医学
BMC Medical Genetics Pub Date : 2020-11-18 DOI: 10.1186/s12881-020-01165-0
Giovanni Brandi, Alessandro Rizzo, Marzia Deserti, Valeria Relli, Valentina Indio, Sofia Bin, Milena Pariali, Andrea Palloni, Stefania De Lorenzo, Francesco Tovoli, Simona Tavolari
{"title":"Wilson disease, ABCC2 c.3972C > T polymorphism and primary liver cancers: suggestions from a familial cluster.","authors":"Giovanni Brandi,&nbsp;Alessandro Rizzo,&nbsp;Marzia Deserti,&nbsp;Valeria Relli,&nbsp;Valentina Indio,&nbsp;Sofia Bin,&nbsp;Milena Pariali,&nbsp;Andrea Palloni,&nbsp;Stefania De Lorenzo,&nbsp;Francesco Tovoli,&nbsp;Simona Tavolari","doi":"10.1186/s12881-020-01165-0","DOIUrl":"https://doi.org/10.1186/s12881-020-01165-0","url":null,"abstract":"<p><strong>Background: </strong>Polymorphisms in genes modulating xenobiotics metabolism, in particular the ABCC2 c.3972C > T single nucleotide polymorphism (SNP) at exon 28, have been suggested to increase primary liver cancer (PLC) risk. Conversely, the occurrence of PLCs in Wilson disease patients is a rare event, in contrast with the occurrence observed in other chronic liver diseases. Here we report the clinical case of five siblings carrying the ABCC2 c.3972C > T SNP; three of them were affected by Wilson disease and two brothers with Wilson disease also developed PLCs.</p><p><strong>Methods: </strong>The presence of the ABCC2 c.3972C > T SNP was assessed by Sanger sequencing and the exposure of PLC risk factors by standardized questionnaires.</p><p><strong>Results: </strong>Notably, PLCs occurred only in the two brothers with the ABCC2 c.3972C > T SNP and Wilson disease who resulted exposed to asbestos and cigarette smoking, but not in the other siblings with the ABCC2 c.3972C > T SNP, alone or in association with Wilson disease, not exposed to these carcinogens and/or to other known risk factors for PLCs.</p><p><strong>Conclusions: </strong>These findings suggest that ABCC2 c.3972C > T SNP and WD, also in association, may not represent a sufficient condition for PLC development, but that co-occurrence of further host/exogenous risk factors are needed to drive this process, reinforcing the notion that liver carcinogenesis is the result of a complex interplay between environmental and host genetic determinants. Due to the sporadic cases of this study and the paucity of data currently available in literature on this issue, future investigations in a larger population are needed to confirm our findings.</p>","PeriodicalId":9015,"journal":{"name":"BMC Medical Genetics","volume":" ","pages":"225"},"PeriodicalIF":0.0,"publicationDate":"2020-11-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s12881-020-01165-0","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38712413","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Novel MYO15A variants are associated with hearing loss in the two Iranian pedigrees. 在两个伊朗血统中,新的MYO15A变异与听力损失有关。
4区 医学
BMC Medical Genetics Pub Date : 2020-11-18 DOI: 10.1186/s12881-020-01168-x
Somayeh Khatami, Masomeh Askari, Fatemeh Bahreini, Morteza Hashemzadeh-Chaleshtori, Saeed Hematian, Samira Asgharzade
{"title":"Novel MYO15A variants are associated with hearing loss in the two Iranian pedigrees.","authors":"Somayeh Khatami,&nbsp;Masomeh Askari,&nbsp;Fatemeh Bahreini,&nbsp;Morteza Hashemzadeh-Chaleshtori,&nbsp;Saeed Hematian,&nbsp;Samira Asgharzade","doi":"10.1186/s12881-020-01168-x","DOIUrl":"https://doi.org/10.1186/s12881-020-01168-x","url":null,"abstract":"<p><strong>Background: </strong>Clinical genetic diagnosis of non-syndromic hearing loss (NSHL) is quite challenging. With regard to its high heterogeneity as well as large size of some genes, it is also really difficult to detect causative mutations using traditional approaches. One of the recent technologies called whole-exome sequencing (WES) has been thus developed in this domain to remove the limitations of conventional methods.</p><p><strong>Methods: </strong>This study was a report on a research study of two unrelated pedigrees with multiple affected cases of hearing loss (HL). Accordingly, clinical evaluations and genetic analysis were performed in both families.</p><p><strong>Results: </strong>The results of WES data analysis to uncover autosomal recessive non-syndromic hearing loss (ARNSHL) disease-causing variants was reported in the present study. Initial analysis identified two novel variants of MYO15A i.e. c.T6442A:p.W2148R and c.10504dupT:p.C3502Lfs*15 correspondingly which were later confirmed by Sanger validations and segregation analyses. According to online prediction tools, both identified variants seemed to have damaging effects.</p><p><strong>Conclusion: </strong>In this study, whole exome sequencing were used as a first approach strategy to identify the two novel variants in MYO15A in two Iranian families with ARNSHL.</p>","PeriodicalId":9015,"journal":{"name":"BMC Medical Genetics","volume":" ","pages":"226"},"PeriodicalIF":0.0,"publicationDate":"2020-11-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s12881-020-01168-x","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38616601","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Congenital thrombocytopenia associated with GNE mutations in twin sisters: a case report and literature review. 先天性血小板减少症与双胞胎姐妹GNE突变相关:1例报告和文献复习。
4区 医学
BMC Medical Genetics Pub Date : 2020-11-16 DOI: 10.1186/s12881-020-01163-2
Xin Li, Ying Li, Min Lei, Jing Tian, Zuocheng Yang, Shoujin Kuang, Yanjuan Tan, Tao Bo
{"title":"Congenital thrombocytopenia associated with GNE mutations in twin sisters: a case report and literature review.","authors":"Xin Li,&nbsp;Ying Li,&nbsp;Min Lei,&nbsp;Jing Tian,&nbsp;Zuocheng Yang,&nbsp;Shoujin Kuang,&nbsp;Yanjuan Tan,&nbsp;Tao Bo","doi":"10.1186/s12881-020-01163-2","DOIUrl":"https://doi.org/10.1186/s12881-020-01163-2","url":null,"abstract":"<p><strong>Background: </strong>Neonatal thrombocytopenia is common in preterm and term neonates admitted to neonatal intensive care units. The etiology behind neonatal thrombocytopenia is complex. Inherited thrombocytopenia is rare and usually results from genetic mutations.</p><p><strong>Case presentation: </strong>Here we report a case of twins with severe inherited thrombocytopenia presented in the neonatal period who were shown to be compound heterozygotes for 2 UDP-N-acetylglucosamine 2-epimerase (GNE) gene mutations, c.1351C > T and c.1330G > T, of which c.1330G > T is a novel mutation.</p><p><strong>Conclusion: </strong>These two GNE mutations may help in the diagnosis and management of thrombocytopenia diagnosed in neonates.</p>","PeriodicalId":9015,"journal":{"name":"BMC Medical Genetics","volume":" ","pages":"224"},"PeriodicalIF":0.0,"publicationDate":"2020-11-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s12881-020-01163-2","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38704399","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 12
Novel nonsense mutation p. Gln264Ter in the ANK1 confirms causative role for hereditary spherocytosis: a case report. ANK1中新的无义突变p. Gln264Ter证实了遗传性球形红细胞增多症的致病作用:一个病例报告。
4区 医学
BMC Medical Genetics Pub Date : 2020-11-13 DOI: 10.1186/s12881-020-01161-4
Senmao Chai, Rong Jiao, Xiaodong Sun, Pan Fu, Qiang Zhao, Ming Sang
{"title":"Novel nonsense mutation p. Gln264Ter in the ANK1 confirms causative role for hereditary spherocytosis: a case report.","authors":"Senmao Chai,&nbsp;Rong Jiao,&nbsp;Xiaodong Sun,&nbsp;Pan Fu,&nbsp;Qiang Zhao,&nbsp;Ming Sang","doi":"10.1186/s12881-020-01161-4","DOIUrl":"https://doi.org/10.1186/s12881-020-01161-4","url":null,"abstract":"<p><strong>Background: </strong>Hereditary spherocytosis (HS) is the most common haemolytic anaemia caused by congenital membrane defects of red blood cells. The name derives from the presence of spherical red blood cells in the peripheral blood. Clinical manifestations of HS are anaemia, haemolytic jaundice, and large spleen, and infection can worsen the condition, often with cholelithiasis. HS is mainly caused by abnormal functions of the products of six genes. Splenectomy is the main treatment for HS.</p><p><strong>Case presentation: </strong>Half a day after birth, the proband exhibited HS-related symptoms, with progressive aggravation. Routine examination in the outpatient department showed an increase in white blood cells and a decrease in red blood cells. His mother had HS and a partial splenectomy. We suspected that the infant might also have HS. Genomic DNA samples were extracted from the three members of the HS trio pedigree, and genomic whole-exome sequencing (WES) was performed. The three DNA samples were amplified by polymerase chain reaction (PCR), followed by Sanger sequencing to identify mutation sites. A novel nonsense heterozygous mutation, c.790C > T (p. Gln264Ter), in the ANK1 gene, which causes premature termination of translation, was found in this Chinese family with autosomal dominant HS.</p><p><strong>Conclusions: </strong>This de novo nonsense mutation can cause the onset of HS in early childhood, with severe symptoms. Expanding the ANK1 genotype mutation spectrum will lay a foundation for the further application of mutation screening in genetic counselling.</p>","PeriodicalId":9015,"journal":{"name":"BMC Medical Genetics","volume":" ","pages":"223"},"PeriodicalIF":0.0,"publicationDate":"2020-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s12881-020-01161-4","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38598782","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
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