{"title":"Allosteric Cooperativity in Inhibition of Protein Kinase a Catalytic Subunit","authors":"A. Kuznetsov, J. Järv","doi":"10.2174/1874940200801010042","DOIUrl":"https://doi.org/10.2174/1874940200801010042","url":null,"abstract":"Allosteric cooperativity in inhibition of protein kinase A was studied for the first time kinetically, by using the second-order rate constants of kemptide phosphorylation, measured in the absence and presence of inhibitors, and the ef- fect of cooperativity was characterized in terms of the interaction factor . This kinetic method was evaluated for differ- ently targeted inhibitors H89 and LRRAALG-NH2, and interaction of these compounds with the free enzyme and the en- zyme-substrate complexes was quantified. The inhibitory effect of these compounds was asymmetric relatively ATP and kemptide, and allosteric enhancement of LRRAALG-NH2 binding in the presence of ATP was revealed. This cooperative effect was compared with results of ligand binding studies and the principle \"better binding - stronger allostery\" was formulated and formalized in terms of a linear-free-energy relationship p( ) = C + S pKi, where p( ) stands for the negative logarithm of the interaction factor and pKi characterizes affinity of the free enzyme for the inhibitory peptide, C=-2.7 and S=0.9, r=0.92.","PeriodicalId":89033,"journal":{"name":"The open enzyme inhibition journal","volume":"4 1","pages":"42-47"},"PeriodicalIF":0.0,"publicationDate":"2008-06-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"68095722","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Homocysteine inhibits hydrogen peroxide breakdown by catalase","authors":"N. Milton","doi":"10.2174/1874940200801010034","DOIUrl":"https://doi.org/10.2174/1874940200801010034","url":null,"abstract":"Catalase, an antioxidant enzyme responsible for degradation of hydrogen peroxide, is protective in many diseases. The amino-acid homocysteine has been suggested to be a pro-oxidant with elevated levels linked to the oxidative stress seen in Alzheimer's and other diseases. This study shows that homocysteine inhibits the breakdown of hydrogen peroxide by catalase. Physiological concentrations of homocysteine inhibited catalase breakdown of hydrogen peroxide. The inhibition of catalase was by generation of the inactive catalase compound II and prevented by ethanol or NADPH but unaffected by iron. Physiological concentrations of homocysteine also inhibited cellular catalase but were not cytotoxic. homocysteine enhanced the toxicity of the amyloid-? peptide in an in vitro model of Alzheimer's neurodegeneration. The antioxidant vitamin E blocked the toxicity of amyloid-? plus homocysteine but not the catalase inhibition. Catalase inhibition by homocysteine may increase the levels of hydrogen peroxide and play a role in the pathology of disease.","PeriodicalId":89033,"journal":{"name":"The open enzyme inhibition journal","volume":"1 1","pages":"34-41"},"PeriodicalIF":0.0,"publicationDate":"2008-05-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"68095297","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
J. Swarbrick, P. Iliades, J. Simpson, I. Macreadie
{"title":"Folate Biosynthesis – Reappraisal of Old and Novel Targets in the Search for New Antimicrobials","authors":"J. Swarbrick, P. Iliades, J. Simpson, I. Macreadie","doi":"10.2174/1874940200801010012","DOIUrl":"https://doi.org/10.2174/1874940200801010012","url":null,"abstract":"Folate biosynthesis remains a key target for antimicrobial therapy. Folate is an essential vitamin (vitamin B9) that is required for many one-carbon transfer reactions and is a critical precursor for the biosynthesis of purines, pyrimidi- nes, and amino acids. Unlike higher eukaryotes that scavenge preformed folates, prokaryotic and lower eukaryotic micro- organisms are dependent on several enzymes for the de novo biosynthesis of folate. One of these enzymes, dihydropte- roate synthase (DHPS), is the target of the first chemically-synthesized antimicrobial agents, the sulfadrugs, which date back to the 1940s. Others are essential enzymes that remain to be explored as drug targets. Resistance to the sulfadrugs rapidly emerges due to the ability of the microbe to alter its susceptibility to the drug by various means. Recently a num- ber of new structures of the enzymes in the pathway has become available. We review the recent literature relating to these targets (the enzymes: GTP cyclohydrolase (GTP-CH); 7,8-dihydroneopterin aldolase (DHNA), 6-hydroxymethyl- 7,8-dihydropterin pyrophosphokinase (HPPK), dihydropteroate synthase (DHPS), dihydrofolate synthase (DHFS)), their mode of action and how current drugs may modulate this on a structural level. Furthermore, these data advance our un- derstanding of the emergence of drug resistance and may aid efforts and play a major role in the design of new, more ef- fective compounds as antimicrobial agents. To this end we also review the recent literature in the development of inhibi- tors of these enzymes. Future progress in this key area has the potential to benefit the war against devastating organisms such as drug-resistant Staphylococcus aureus and Plasmodium falciparum.","PeriodicalId":89033,"journal":{"name":"The open enzyme inhibition journal","volume":"1 1","pages":"12-33"},"PeriodicalIF":0.0,"publicationDate":"2008-05-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"68095266","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Heinrich F. Bürgers, Dominik W. Schelshorn, W. Kuschinsky, M. Maurer
{"title":"Lithium Promotes Adult Neural Progenitor Differentiation Via GSK3β- Dependent Signaling Pathways","authors":"Heinrich F. Bürgers, Dominik W. Schelshorn, W. Kuschinsky, M. Maurer","doi":"10.2174/1874940200801010005","DOIUrl":"https://doi.org/10.2174/1874940200801010005","url":null,"abstract":"Lithium is one of the standard drugs in the treatment of bipolar disorder, although its molecular modes of ac- tion are not well understood. It is a potent inhibitor of the multifunctional enzyme Glycogen Synthase Kinase 3s (GSK3s), which also plays a central role in neurogenesis via the developmental Wnt signaling pathway. In the present study, we analyzed the influence of lithium on GSK3s signaling in adult neural progenitor cells (NPCs) from the rat sub- ventricular zone. Protein expression patterns of NPCs cultured in the presence of 20 mM lithium chloride were compared to those of untreated cells. A proteomic approach based on two-dimensional gel electrophoresis and mass spectrometry showed changes in several GSK3s-related proteins. We demonstrate the inhibition of GSK3s by stabilization and nuclear transfer of its downstream target, s-catenin. Moreover, the phosphorylated (=inhibited) GSK3s protein was strongly enri- ched in the nuclear fraction of lithium-treated cells. The fraction of cells differentiated into astroglia increased moderately, and the fraction of cells differentiated into neurons increased strongly, as shown by immunostaining. In conclusion, li- thium promotes NPC differentiation, mainly to neurons, via GSK3s-related pathways.","PeriodicalId":89033,"journal":{"name":"The open enzyme inhibition journal","volume":"1 1","pages":"5-11"},"PeriodicalIF":0.0,"publicationDate":"2008-04-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"68095252","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Ca Chelators and Membrane Transport: “Geometric” Considerations","authors":"Ronald F. Abercrombiea, James E. Moore","doi":"10.2174/1874940200801010001","DOIUrl":"https://doi.org/10.2174/1874940200801010001","url":null,"abstract":"We examine theoretically the ability of diffusible cytoplasmic carriers to facilitate delivery of substrate to sites within biological membranes. Two processes are analyzed. In one, delivery of Ca to a site on a membrane surface is examined. As a contrasting example, chelator-supported diffusion to a uniform absorbing surface is considered.","PeriodicalId":89033,"journal":{"name":"The open enzyme inhibition journal","volume":"1 1","pages":"1-4"},"PeriodicalIF":0.0,"publicationDate":"2008-04-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"68095239","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}