Saline systems最新文献

{"title":"Molecular characterization and the effect of salinity on cyanobacterial diversity in the rice fields of Eastern Uttar Pradesh, India.","authors":"Ashish Kumar Srivastava,&nbsp;Poonam Bhargava,&nbsp;Arvind Kumar,&nbsp;Lal Chand Rai,&nbsp;Brett A Neilan","doi":"10.1186/1746-1448-5-4","DOIUrl":"https://doi.org/10.1186/1746-1448-5-4","url":null,"abstract":"<p><strong>Background: </strong>Salinity is known to affect almost half of the world's irrigated lands, especially rice fields. Furthermore, cyanobacteria, one of the critical inhabitants of rice fields have been characterized at molecular level from many different geographical locations. This study, for the first time, has examined the molecular diversity of cyanobacteria inhabiting Indian rice fields which experience various levels of salinity.</p><p><strong>Results: </strong>Ten physicochemical parameters were analyzed for samples collected from twenty experimental sites. Electrical conductivity data were used to classify the soils and to investigate relationship between soil salinity and cyanobacterial diversity. The cyanobacterial communities were analyzed using semi-nested 16S rRNA gene PCR and denaturing gradient gel electrophoresis. Out of 51 DGGE bands selected for sequencing only 31 which showed difference in sequences were subjected to further analysis. BLAST analysis revealed highest similarity for twenty nine of the sequences with cyanobacteria, and the other two to plant plastids. Clusters obtained based on morphological and molecular attributes of cyanobacteria were correlated to soil salinity. Among six different clades, clades 1, 2, 4 and 6 contained cyanobacteria inhabiting normal or low saline (having EC < 4.0 ds m(-1)) to (high) saline soils (having EC > 4.0 ds m(-1)), however, clade 5 represented the cyanobacteria inhabiting only saline soils. Whilst, clade 3 contained cyanobacteria from normal soils. The presence of DGGE band corresponding to Aulosira strains were present in large number of soil indicating its wide distribution over a range of salinities, as were Nostoc, Anabaena, and Hapalosiphon although to a lesser extent in the sites studied.</p><p><strong>Conclusion: </strong>Low salinity favored the presence of heterocystous cyanobacteria, while very high salinity mainly supported the growth of non-heterocystous genera. High nitrogen content in the low salt soils is proposed to be a result of reduced ammonia volatilization compared to the high salt soils. Although many environmental factors could potentially determine the microbial community present in these multidimensional ecosystems, changes in the diversity of cyanobacteria in rice fields was correlated to salinity.</p>","PeriodicalId":87359,"journal":{"name":"Saline systems","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2009-04-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1746-1448-5-4","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"28167512","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Egg banks in hypersaline lakes of the South-East Europe.","authors":"Salvatore Moscatello,&nbsp;Genuario Belmonte","doi":"10.1186/1746-1448-5-3","DOIUrl":"https://doi.org/10.1186/1746-1448-5-3","url":null,"abstract":"<p><p>The cyst banks of 6 coastal hypersaline lakes of South-East Europe have been investigated. The study concerned the bottom sediments of Khersonesskoe and Koyashskoe lakes in the Crimea (Ukraine), Nartë saltworks (Albania), Vecchia Salina at Torre Colimena (Apulia, Italy), Pantano Grande and Pantano Roveto at Vendicari (Sicily, Italy). A total of 19 cyst types were recognised. The cyst banks of lakes were found to be well separated in the representation derived from a statistical multivariate data analysis. For all the lakes examined a comparison was possible between the resting community in sediments (cyst bank) and the active one in the water. The cyst banks contained more species than those recorded over a multi-year sampling effort in the water column. The study of cyst hatching, performed on 5 cyst types under lab conditions, demonstrated that cysts do not hatch under the same conditions. Furthermore, each cyst type shows a wide range of preferential hatching conditions, which allow us to confirm the ecological generalism of salt lake species.</p>","PeriodicalId":87359,"journal":{"name":"Saline systems","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2009-03-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1746-1448-5-3","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"28049606","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Long-term surveillance of sulfate-reducing bacteria in highly saline industrial wastewater evaporation ponds.","authors":"Eitan Ben-Dov,&nbsp;Ariel Kushmaro,&nbsp;Asher Brenner","doi":"10.1186/1746-1448-5-2","DOIUrl":"https://doi.org/10.1186/1746-1448-5-2","url":null,"abstract":"<p><p>Abundance and seasonal dynamics of sulfate-reducing bacteria (SRB), in general, and of extreme halophilic SRB (belonging to Desulfocella halophila) in particular, were examined in highly saline industrial wastewater evaporation ponds over a forty one month period. Industrial wastewater was sampled and the presence of SRB was determined by quantitative real-time PCR (qPCR) with a set of primers designed to amplify the dissimilatory sulfite reductase (dsrA) gene. SRB displayed higher abundance during the summer (10(6)-10(8) targets ml(-1)) and lower abundance from the autumn-spring (10(3)-10(5) targets ml(-1)). However, addition of concentrated dissolved organic matter into the evaporation ponds during winter immediately resulted in a proliferation of SRB, despite the lower wastewater temperature (12-14 degrees C). These results indicate that the qPCR approach can be used for rapid measurement of SRB to provide valuable information about the abundance of SRB in harsh environments, such as highly saline industrial wastewaters. Low level of H2S has been maintained over five years, which indicates a possible inhibition of SRB activity, following artificial salination (approximately 16% w/v of NaCl) of wastewater evaporation ponds, despite SRB reproduction being detected by qPCR.</p>","PeriodicalId":87359,"journal":{"name":"Saline systems","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2009-02-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1746-1448-5-2","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"27993090","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Patterns of seasonal phytoplankton distribution in prairie saline lakes of the northern Great Plains (U.S.A.)","authors":"Courtney R. Salm, J. Saros, Callie S Martin, Jarvis M Erickson","doi":"10.1186/1746-1448-5-1","DOIUrl":"https://doi.org/10.1186/1746-1448-5-1","url":null,"abstract":"","PeriodicalId":87359,"journal":{"name":"Saline systems","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2009-01-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1746-1448-5-1","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"65688000","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"A trehalose 6-phosphate synthase gene of the hemocytes of the blue crab, Callinectes sapidus: cloning, the expression, its enzyme activity and relationship to hemolymph trehalose levels.","authors":"J Sook Chung","doi":"10.1186/1746-1448-4-18","DOIUrl":"https://doi.org/10.1186/1746-1448-4-18","url":null,"abstract":"<p><p>Trehalose in ectoderms functions in energy metabolism and protection in extreme environmental conditions. We structurally characterized trehalose 6-phosphate synthase (TPS) from hemocytes of the blue crab, Callinectes sapidus. C. sapidus Hemo TPS (CasHemoTPS), like insect TPS, encodes both TPS and trehalose phosphate phosphatase domains. Trehalose seems to be a major sugar, as it shows higher levels than does glucose in hemocytes and hemolymph. Increases in HemoTPS expression, TPS enzyme activity in hemocytes, and hemolymph trehalose levels were determined 24 h after lipopolysaccharide challenge, suggesting that both TPS and TPP domains of CasHemoTPS are active and functional. The TPS gene has a wide tissue distribution in C. sapidus, suggesting multiple biosynthetic sites. A correlation between TPS activity in hemocytes and hemolymph trehalose levels was found during the molt cycle. The current study provides the first evidence of presence of trehalose in hemocytes and TPS in tissues of C. sapidus and implicates its functional role in energy metabolism and physiological adaptation.</p>","PeriodicalId":87359,"journal":{"name":"Saline systems","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2008-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1746-1448-4-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"27894957","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Morphological study of Cyclotella choctawhatcheeana Prasad (Stephanodiscaceae) from a saline Mexican lake.","authors":"Maria Guadalupe Oliva,&nbsp;Alfonso Lugo,&nbsp;Javier Alcocer,&nbsp;Enrique A Cantoral-Uriza","doi":"10.1186/1746-1448-4-17","DOIUrl":"https://doi.org/10.1186/1746-1448-4-17","url":null,"abstract":"<p><strong>Background: </strong>Cyclotella choctawhatcheeana Prasad 1990 is a small centric diatom found in the plankton of water bodies with a wide range of salt concentrations. This paper describes the morphological features of the valve of C. choctawhatcheeana, from Alchichica lake, a hyposaline lake located in Central Mexico, and provides information about their ecology with respect to water chemistry and distribution in the water column along the annual cycle. Alchichica, and their neighbor lake Atexcac, are the only Mexican water bodies where C. choctawhatcheeana has been registered.</p><p><strong>Results: </strong>Morphological differences were found with respect to the original description. The valves of C. choctawhatcheeana from Alchichica exceeded the diameter (5-12 microm) given for the type material (3.0-9.5 microm), and it does not forms or seldom forms short chains (2-3 cells) in contrast of up to 20 cell chains. Other difference was the presence of irregularly distributed small silica granules around the margin of the external view of the valve, meanwhile in Prasad's diagnosis a ring of siliceous granules is present near the valve margin; all other features were within the range of variation of the species. Maximum densities (up to 3877 cells ml(-1)) of C. choctawhatcheeana were found in Alchichica lake from June to October, along the stratificated period of the lake. Low densities (48 cells ml(-1)) when the water column was mixed, in January and February. C. choctawhatcheeana of Lake Alchichica was found in an ample depth range from 20 m down to 50 m. Conductivity (K25) ranged between 13.3 and 14.5 mS cm(-1) and the pH between 8.8 and 10.0. Water temperature fluctuated between 14.5 and 20 degrees C. Dissolved oxygen ranged from anoxic (non detectable) up to saturation (7 mg l(-1)).</p><p><strong>Conclusion: </strong>The morphology of C. choctawhatcheeana from Alchichica corresponded to the original description, with exception of some secondary traits. C. choctawhatcheeana can grow in several different environmental conditions. It can use nutrients along the water column during the mixing period in the lake. But when nutrients are scarce, C. choctawhatcheeana, can be located in very high densities, into a well defined depth layer of the lake, being an important contributor to the depth chlorophyll maximum (DCM). The species seems to be a small size but significant component of the phytoplankton in the saline Mexican lake Alchichica.</p>","PeriodicalId":87359,"journal":{"name":"Saline systems","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2008-12-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1746-1448-4-17","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"27884032","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Acidophilic haloarchaeal strains are isolated from various solar salts.","authors":"Hiroaki Minegishi,&nbsp;Toru Mizuki,&nbsp;Akinobu Echigo,&nbsp;Tadamasa Fukushima,&nbsp;Masahiro Kamekura,&nbsp;Ron Usami","doi":"10.1186/1746-1448-4-16","DOIUrl":"https://doi.org/10.1186/1746-1448-4-16","url":null,"abstract":"<p><p>Haloarchaeal strains require high concentrations of NaCl for their growth, with optimum concentrations of 10-30%. They display a wide variety of morphology and physiology including pH range for growth. Many strains grow at neutral to slightly alkaline pH, and some only at alkaline pH. However, no strain has been reported to grow only in acidic pH conditions within the family Halobacteriaceae.In this study, we isolated many halophiles capable of growth in a 20% NaCl medium adjusted to pH 4.5 from 28 commercially available salts. They showed growth at pH 4.0 to 6.5, depending slightly on the magnesium content. The most acidophilic strain MH1-52-1 isolated from an imported solar salt (pH of saturated solution was 9.0) was non-pigmented and extremely halophilic. It was only capable of growing at pH 4.2-4.8 with an optimum at pH 4.4 in a medium with 0.1% magnesium chloride, and at pH 4.0-6.0 (optimum at pH 4.0) in a medium with 5.0% magnesium. The 16S rRNA and DNA-dependent RNA polymerase subunit B' gene sequences demonstrated clearly that the strain MH1-52-1 represents a new genus in the family Halobacteriaceae.</p>","PeriodicalId":87359,"journal":{"name":"Saline systems","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2008-10-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1746-1448-4-16","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"27823223","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Distribution, abundance and diversity of the extremely halophilic bacterium Salinibacter ruber.","authors":"Josefa Antón,&nbsp;Arantxa Peña,&nbsp;Fernando Santos,&nbsp;Manuel Martínez-García,&nbsp;Philippe Schmitt-Kopplin,&nbsp;Ramon Rosselló-Mora","doi":"10.1186/1746-1448-4-15","DOIUrl":"https://doi.org/10.1186/1746-1448-4-15","url":null,"abstract":"<p><p>Since its discovery in 1998, representatives of the extremely halophilic bacterium Salinibacter ruber have been found in many hypersaline environments across the world, including coastal and solar salterns and solar lakes. Here, we review the available information about the distribution, abundance and diversity of this member of the Bacteroidetes.</p>","PeriodicalId":87359,"journal":{"name":"Saline systems","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2008-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1746-1448-4-15","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"27823657","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Unravelling the adaptation responses to osmotic and temperature stress in Chromohalobacter salexigens, a bacterium with broad salinity tolerance.","authors":"Carmen Vargas,&nbsp;Montserrat Argandoña,&nbsp;Mercedes Reina-Bueno,&nbsp;Javier Rodríguez-Moya,&nbsp;Cristina Fernández-Aunión,&nbsp;Joaquín J Nieto","doi":"10.1186/1746-1448-4-14","DOIUrl":"https://doi.org/10.1186/1746-1448-4-14","url":null,"abstract":"<p><p>Chromohalobacter salexigens, a Gammaproteobacterium belonging to the family Halomonadaceae, shows a broad salinity range for growth. Osmoprotection is achieved by the accumulation of compatible solutes either by transport (betaine, choline) or synthesis (mainly ectoine and hydroxyectoine). Ectoines can play additional roles as nutrients and, in the case of hydroxyectoine, in thermotolerance. A supplementary solute, trehalose, not present in cells grown at 37 degrees C, is accumulated at higher temperatures, suggesting its involvement in the response to heat stress. Trehalose is also accumulated at 37 degrees C in ectoine-deficient mutants, indicating that ectoines suppress trehalose synthesis in the wild-type strain. The genes for ectoine (ectABC) and hydroxyectoine (ectD, ectE) production are arranged in three different clusters within the C. salexigens chromosome. In order to cope with changing environment, C. salexigens regulates its cytoplasmic pool of ectoines by a number of mechanisms that we have started to elucidate. This is a highly complex process because (i) hydroxyectoine can be synthesized by other enzymes different to EctD (ii) ectoines can be catabolized to serve as nutrients, (iii) the involvement of several transcriptional regulators (sigmaS, sigma32, Fur, EctR) and hence different signal transduction pathways, and (iv) the existence of post-trancriptional control mechanisms. In this review we summarize our present knowledge on the physiology and genetics of the processes allowing C. salexigens to cope with osmotic stress and high temperature, with emphasis on the transcriptional regulation.</p>","PeriodicalId":87359,"journal":{"name":"Saline systems","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2008-09-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1746-1448-4-14","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"27675709","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Transcriptional responses to biologically relevant doses of UV-B radiation in the model archaeon, Halobacterium sp. NRC-1.","authors":"Ivan Boubriak,&nbsp;Wooi Loon Ng,&nbsp;Priya DasSarma,&nbsp;Shiladitya DasSarma,&nbsp;David J Crowley,&nbsp;Shirley J McCready","doi":"10.1186/1746-1448-4-13","DOIUrl":"https://doi.org/10.1186/1746-1448-4-13","url":null,"abstract":"<p><strong>Background: </strong>Most studies of the transcriptional response to UV radiation in living cells have used UV doses that are much higher than those encountered in the natural environment, and most focus on short-wave UV (UV-C) at 254 nm, a wavelength that never reaches the Earth's surface. We have studied the transcriptional response of the sunlight-tolerant model archaeon, Halobacterium sp. NRC-1, to low doses of mid-wave UV (UV-B) to assess its response to UV radiation that is likely to be more biologically relevant.</p><p><strong>Results: </strong>Halobacterium NRC-1 cells were irradiated with UV-B at doses equivalent to 30 J/m2 and 5 J/m2 of UV-C. Transcriptional profiling showed that only 11 genes were up-regulated 1.5-fold or more by both UV-B doses. The most strongly up-regulated gene was radA1 (vng2473), the archaeal homologue of RAD51/recA recombinase. The others included arj1 (vng779) (recJ-like exonuclease), top6A (vng884) and top6B (vng885) (coding for Topoisomerase VI subunits), and nrdJ (vng1644) (which encodes a subunit of ribonucleotide reductase). We have found that four of the consistently UV-B up-regulated genes, radA1 (vng2473), vng17, top6B (vng885) and vng280, share a common 11-base pair motif in their promoter region, TTTCACTTTCA. Similar sequences were found in radA promoters in other halophilic archaea, as well as in the radA promoter of Methanospirillum hungatei. We analysed the transcriptional response of a repair-deficient DeltauvrA (vng2636) DeltauvrC (vng2381) double-deletion mutant and found common themes between it and the response in repair proficient cells.</p><p><strong>Conclusion: </strong>Our results show a core set of genes is consistently up-regulated after exposure to UV-B light at low, biologically relevant doses. Eleven genes were up-regulated, in wild-type cells, after two UV-B doses (comparable to UV-C doses of 30 J/m2 and 5 J/m2), and only four genes were up-regulated by all doses of UV-B and UV-C that we have used in this work and previously. These results suggest that high doses of UV-C radiation do not necessarily provide a good model for the natural response to environmental UV. We have found an 11-base pair motif upstream of the TATA box in four of the UV-B up-regulated genes and suggest that this motif is the binding site for a transcriptional regulator involved in their response to UV damage in this model archaeon.</p>","PeriodicalId":87359,"journal":{"name":"Saline systems","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2008-08-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1746-1448-4-13","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"27647500","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}