Charles J Cooper, Sharon P Cooper, Deborah J del Junco, Eva M Shipp, Ryan Whitworth, Sara R Cooper
{"title":"Web-based data collection: detailed methods of a questionnaire and data gathering tool.","authors":"Charles J Cooper, Sharon P Cooper, Deborah J del Junco, Eva M Shipp, Ryan Whitworth, Sara R Cooper","doi":"10.1186/1742-5573-3-1","DOIUrl":"https://doi.org/10.1186/1742-5573-3-1","url":null,"abstract":"<p><p>There have been dramatic advances in the development of web-based data collection instruments. This paper outlines a systematic web-based approach to facilitate this process through locally developed code and to describe the results of using this process after two years of data collection. We provide a detailed example of a web-based method that we developed for a study in Starr County, Texas, assessing high school students' work and health status. This web-based application includes data instrument design, data entry and management, and data tables needed to store the results that attempt to maximize the advantages of this data collection method. The software also efficiently produces a coding manual, web-based statistical summary and crosstab reports, as well as input templates for use by statistical packages.Overall, web-based data entry using a dynamic approach proved to be a very efficient and effective data collection system. This data collection method expedited data processing and analysis and eliminated the need for cumbersome and expensive transfer and tracking of forms, data entry, and verification. The code has been made available for non-profit use only to the public health research community as a free download..</p>","PeriodicalId":87082,"journal":{"name":"Epidemiologic perspectives & innovations : EP+I","volume":"3 ","pages":"1"},"PeriodicalIF":0.0,"publicationDate":"2006-01-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1742-5573-3-1","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25781300","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Betsy Foxman, Lixin Zhang, James S Koopman, Shannon D Manning, Carl F Marrs
{"title":"Choosing an appropriate bacterial typing technique for epidemiologic studies.","authors":"Betsy Foxman, Lixin Zhang, James S Koopman, Shannon D Manning, Carl F Marrs","doi":"10.1186/1742-5573-2-10","DOIUrl":"https://doi.org/10.1186/1742-5573-2-10","url":null,"abstract":"<p><p>A wide variety of bacterial typing systems are currently in use that vary greatly with respect to the effort required, cost, reliability and ability to discriminate between bacterial strains. No one technique is optimal for all forms of investigation. We discuss the desired level of discrimination and need for a biologic basis for grouping strains of apparently different types when using bacterial typing techniques for different epidemiologic applications: 1) confirming epidemiologic linkage in outbreak investigations, 2) generating hypotheses about epidemiologic relationships between bacterial strains in the absence of epidemiologic information, and 3) describing the distributions of bacterial types and identifying determinants of those distributions. Inferences made from molecular epidemiologic studies of bacteria depend upon both the typing technique selected and the study design used; thus, choice of typing technique is pivotal for increasing our understanding of the pathogenesis and transmission, and eventual disease prevention.</p>","PeriodicalId":87082,"journal":{"name":"Epidemiologic perspectives & innovations : EP+I","volume":"2 ","pages":"10"},"PeriodicalIF":0.0,"publicationDate":"2005-11-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1742-5573-2-10","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25707264","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"An easy approach to the Robins-Breslow-Greenland variance estimator.","authors":"Paul Silcocks","doi":"10.1186/1742-5573-2-9","DOIUrl":"10.1186/1742-5573-2-9","url":null,"abstract":"<p><p>The Mantel-Haenszel estimate for the odds ratio (and its logarithm) in stratified case control studies lacked a generally acceptable variance estimate for many years. The Robins-Breslow-Greenland estimate has met this need, but standard textbooks still do not provide an explanation of how it is derived. This article provides an accessible derivation which demonstrates the link between the Robins-Breslow-Greenland estimate and the familiar Woolf estimate for the variance of the log odds ratio, and which could easily be included in Masters level courses in epidemiology. The relationships to the unconditional and conditional maximum likelihood estimates are also reviewed.</p>","PeriodicalId":87082,"journal":{"name":"Epidemiologic perspectives & innovations : EP+I","volume":"2 ","pages":"9"},"PeriodicalIF":0.0,"publicationDate":"2005-09-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1270683/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25605468","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Causal thinking and causal language in epidemiology: it's in the details.","authors":"Robert Lipton, Terje Ødegaard","doi":"10.1186/1742-5573-2-8","DOIUrl":"https://doi.org/10.1186/1742-5573-2-8","url":null,"abstract":"<p><p>Although epidemiology is necessarily involved with elucidating causal processes, we argue that there is little practical need, having described an epidemiological result, to then explicitly label it as causal (or not). Doing so is a convention which obscures the valuable core work of epidemiology as an important constituent of public health practice. We discuss another approach which emphasizes the public health \"use value\" of research findings in regard to prediction and intervention independent from explicit metaphysical causal claims. Examples are drawn from smoking and lung cancer, with particular focus on the original 1964 Surgeon General's report on smoking and the new version released in 2004. The intent is to help the epidemiologist focus on the pertinent implications of research, which, from a public health point of view, in large part entails the ability to predict and to intervene. Further discussion will center on the importance of differentiating between technical/practical uses of causal language, as might be used in structural equations or marginal structural modeling, and more foundational notions of cause. We show that statistical/epidemiological results, such as \"smoking two packs a day increases risk of lung cancer by 10 times\" are in themselves a kind of causal argument that are not in need of additional support from relatively ambiguous language such as \"smoking causes lung cancer.\" We will show that the confusion stemming from the use of this latter statement is more than mere semantics. Our goal is to allow researchers to feel more confident in the power of their research to tell a convincing story without resorting to metaphysical/unsupportable notions of cause.</p>","PeriodicalId":87082,"journal":{"name":"Epidemiologic perspectives & innovations : EP+I","volume":"2 ","pages":"8"},"PeriodicalIF":0.0,"publicationDate":"2005-07-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1742-5573-2-8","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25220424","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Reporting incidence from a surveillance system with an operational case definition of unknown predictive value positive.","authors":"Scott R Kegler","doi":"10.1186/1742-5573-2-7","DOIUrl":"10.1186/1742-5573-2-7","url":null,"abstract":"<p><p>When reporting incidence rate estimates for relatively rare health conditions, associated case counts are often assumed to follow a Poisson distribution. Case counts obtained from large-scale electronic surveillance systems are often inflated by the presence of false positives, however, and adjusted case counts based on the results of a validation sample will have variances which are hyper-Poisson. This paper presents a simple method for constructing interval estimates for incidence rates based on case counts that are adjusted downward using an estimate of the predictive value positive of the surveillance case definition.</p>","PeriodicalId":87082,"journal":{"name":"Epidemiologic perspectives & innovations : EP+I","volume":"2 ","pages":"7"},"PeriodicalIF":0.0,"publicationDate":"2005-07-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1215500/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25201735","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Teaching: the role of active manipulation of three-dimensional scatter plots in understanding the concept of confounding.","authors":"Cora M C Busstra, Rob Hartog, Pieter van 't Veer","doi":"10.1186/1742-5573-2-6","DOIUrl":"10.1186/1742-5573-2-6","url":null,"abstract":"<p><p>In teaching epidemiology, confounding is a difficult topic. The authors designed active learning objects (LO) based on manipulable three-dimensional (3D) plots to facilitate understanding of confounding. The 3D LOs help illustrate of how confounding can occur, how it generates bias and how to adjust for it. For the development of the LOs, guidelines were formulated based on epidemiology and theories of instructional design. These included integrating the conceptual and empirical aspects: the causal relationships believed to be operating in the study population (conceptual aspect) and data-oriented associations (empirical aspect). Other guidelines based on theories of instructional design included: actively engage the students, use visual methods when possible, and motivate the students about the importance of the topic. Students gave the method strong positive evaluations. Experts in epidemiology agreed that the 3D LOs apply generally accepted scientific views on confounding. Based on their experiences, the authors think that the 3D plots can be useful addition in the teaching of confounding. The article includes links and a downloadable file that provide a demonstration of the 3D LO-based teaching materials.</p>","PeriodicalId":87082,"journal":{"name":"Epidemiologic perspectives & innovations : EP+I","volume":"2 ","pages":"6"},"PeriodicalIF":0.0,"publicationDate":"2005-06-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1192815/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25307044","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Introducing article-processing charges and inviting \"detailed methods sections\" articles.","authors":"Carl V Phillips","doi":"10.1186/1742-5573-2-5","DOIUrl":"https://doi.org/10.1186/1742-5573-2-5","url":null,"abstract":"<p><p>This editorial introduces the use of article-processing charges at Epidemiologic Perspectives & Innovations and reviews that advantages of publishing in an Open Access journal. In addition, it introduces a new type of article the journal hopes to publish, detailed reports of study design or data analysis methods that have been used in health science research. The new type of article is intended to supplement the woefully constrained methods sections in standard research report articles, providing information that better fulfills the goals of scientific publishing.</p>","PeriodicalId":87082,"journal":{"name":"Epidemiologic perspectives & innovations : EP+I","volume":"2 1","pages":"5"},"PeriodicalIF":0.0,"publicationDate":"2005-06-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1742-5573-2-5","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25123072","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Historical perspective: S. Leonard Syme's influence on the development of social epidemiology and where we go from there.","authors":"Irene H Yen","doi":"10.1186/1742-5573-2-3","DOIUrl":"10.1186/1742-5573-2-3","url":null,"abstract":"<p><p>This article accompanies Len Syme's \"Historical Perspective: The social determinants of disease--some roots of the movement.\" It describes some of Len's role in the development of social epidemiology through mentoring investigators and influencing training programs. It also discusses some challenges for the field and ways to move forward.</p>","PeriodicalId":87082,"journal":{"name":"Epidemiologic perspectives & innovations : EP+I","volume":" ","pages":"3"},"PeriodicalIF":0.0,"publicationDate":"2005-05-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1742-5573-2-3","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40931815","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Historical Perspective: The social determinants of disease - some roots of the movement.","authors":"S Leonard Syme","doi":"10.1186/1742-5573-2-2","DOIUrl":"10.1186/1742-5573-2-2","url":null,"abstract":"<p><p>This is an account of the early days of research on social determinants as I experienced them. I describe my time as one of four Fellows in a new training program in Medical Sociology at Yale University and how I came to be the first Sociologist employed in the U.S. Public Health Service. I then became the first Executive Secretary of a new Study Section at NIH dealing with a small number of research grant proposals in the field of Epidemiology. My account deals with some of my experiences in this developing field, culminating with my appointment as the first Sociologist to become a Professor of Epidemiology in a School of Public Health.</p>","PeriodicalId":87082,"journal":{"name":"Epidemiologic perspectives & innovations : EP+I","volume":"2 1","pages":"2"},"PeriodicalIF":0.0,"publicationDate":"2005-04-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1087863/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25065996","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}