International journal of plant genomics最新文献_第8页

Bioinformatic tools for inferring functional information from plant microarray data: tools for the first steps. 从植物微阵列数据推断功能信息的生物信息学工具:第一步的工具。

International journal of plant genomics Pub Date : 2008-01-01 DOI: 10.1155/2008/147563

Grier P Page, Issa Coulibaly

引用次数: 7

Genomic resources and tools for gene function analysis in potato. 马铃薯基因功能分析的基因组资源和工具。

International journal of plant genomics Pub Date : 2008-01-01 Epub Date: 2008-12-18 DOI: 10.1155/2008/216513

Glenn J Bryan, Ingo Hein

{"title":"Genomic resources and tools for gene function analysis in potato.","authors":"Glenn J Bryan, Ingo Hein","doi":"10.1155/2008/216513","DOIUrl":"https://doi.org/10.1155/2008/216513","url":null,"abstract":"Potato, a highly heterozygous tetraploid, is undergoing an exciting phase of genomics resource development. The potato research community has established extensive genomic resources, such as large expressed sequence tag (EST) data collections, microarrays and other expression profiling platforms, and large-insert genomic libraries. Moreover, potato will now benefit from a global potato physical mapping effort, which is serving as the underlying resource for a full potato genome sequencing project, now well underway. These tools and resources are having a major impact on potato breeding and genetics. The genome sequence will provide an invaluable comparative genomics resource for cross-referencing to the other Solanaceae, notably tomato, whose sequence is also being determined. Most importantly perhaps, a potato genome sequence will pave the way for the functional analysis of the large numbers of potato genes that await discovery. Potato, being easily transformable, is highly amenable to the investigation of gene function by biotechnological approaches. Recent advances in the development of Virus Induced Gene Silencing (VIGS) and related methods will facilitate rapid progress in the analysis of gene function in this important crop.","PeriodicalId":73471,"journal":{"name":"International journal of plant genomics","volume":" ","pages":"216513"},"PeriodicalIF":0.0,"publicationDate":"2008-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2008/216513","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"27920277","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 15

Structural and functional genomics of tomato. 番茄的结构与功能基因组学。

International journal of plant genomics Pub Date : 2008-01-01 DOI: 10.1155/2008/820274

Amalia Barone, Maria Luisa Chiusano, Maria Raffaella Ercolano, Giovanni Giuliano, Silvana Grandillo, Luigi Frusciante

{"title":"Structural and functional genomics of tomato.","authors":"Amalia Barone, Maria Luisa Chiusano, Maria Raffaella Ercolano, Giovanni Giuliano, Silvana Grandillo, Luigi Frusciante","doi":"10.1155/2008/820274","DOIUrl":"https://doi.org/10.1155/2008/820274","url":null,"abstract":"Tomato (Solanum lycopersicum L.) is the most intensively investigated Solanaceous species both in genetic and genomics studies. It is a diploid species with a haploid set of 12 chromosomes and a small genome (950 Mb). Based on the detailed knowledge on tomato structural genomics, the sequencing of the euchromatic regions started in the year 2005 as a common effort of different countries. The manuscript focuses on markers used for tomato, on mapping efforts mainly based on exploitation of natural biodiversity, and it gives an updated report on the international sequencing activities. The principal tools developed to explore the function of tomato genes are also summarized, including mutagenesis, genetic transformation, and transcriptome analysis. The current progress in bioinformatic strategies available to manage the overwhelming amount of data generated from different tomato \"omics\" approaches is reported, and emphasis is given to the effort of producing a computational workbench for the analysis of the organization, as well as the functionality and evolution of the Solanaceae family.","PeriodicalId":73471,"journal":{"name":"International journal of plant genomics","volume":" ","pages":"820274"},"PeriodicalIF":0.0,"publicationDate":"2008-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2008/820274","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"27301880","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 54

Barley genomics: An overview. 大麦基因组学:综述。

International journal of plant genomics Pub Date : 2008-01-01 DOI: 10.1155/2008/486258

Nese Sreenivasulu, Andreas Graner, Ulrich Wobus

{"title":"Barley genomics: An overview.","authors":"Nese Sreenivasulu, Andreas Graner, Ulrich Wobus","doi":"10.1155/2008/486258","DOIUrl":"https://doi.org/10.1155/2008/486258","url":null,"abstract":"Barley (Hordeum vulgare), first domesticated in the Near East, is a well-studied crop in terms of genetics, genomics, and breeding and qualifies as a model plant for Triticeae research. Recent advances made in barley genomics mainly include the following: (i) rapid accumulation of EST sequence data, (ii) growing number of studies on transcriptome, proteome, and metabolome, (iii) new modeling techniques, (iv) availability of genome-wide knockout collections as well as efficient transformation techniques, and (v) the recently started genome sequencing effort. These developments pave the way for a comprehensive functional analysis and understanding of gene expression networks linked to agronomically important traits. Here, we selectively review important technological developments in barley genomics and related fields and discuss the relevance for understanding genotype-phenotype relationships by using approaches such as genetical genomics and association studies. High-throughput genotyping platforms that have recently become available will allow the construction of high-density genetic maps that will further promote marker-assisted selection as well as physical map construction. Systems biology approaches will further enhance our knowledge and largely increase our abilities to design refined breeding strategies on the basis of detailed molecular physiological knowledge.","PeriodicalId":73471,"journal":{"name":"International journal of plant genomics","volume":" ","pages":"486258"},"PeriodicalIF":0.0,"publicationDate":"2008-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2008/486258","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"27359373","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 74

Genomics of sorghum. 高粱基因组学。

International journal of plant genomics Pub Date : 2008-01-01 DOI: 10.1155/2008/362451

Andrew H Paterson

引用次数: 125

Development in rice genome research based on accurate genome sequence. 基于精确基因组序列的水稻基因组研究进展。

International journal of plant genomics Pub Date : 2008-01-01 DOI: 10.1155/2008/348621

Takashi Matsumoto, Jianzhong Wu, Baltazar A Antonio, Takuji Sasaki

引用次数: 10

Statistical analysis of efficient unbalanced factorial designs for two-color microarray experiments. 双色微阵列实验中有效非平衡因子设计的统计分析。

International journal of plant genomics Pub Date : 2008-01-01 DOI: 10.1155/2008/584360

Robert J Tempelman

引用次数: 6

Sugarcane functional genomics: gene discovery for agronomic trait development. 甘蔗功能基因组学:农艺性状发育的基因发现。

International journal of plant genomics Pub Date : 2008-01-01 DOI: 10.1155/2008/458732

M Menossi, M C Silva-Filho, M Vincentz, M-A Van-Sluys, G M Souza

{"title":"Sugarcane functional genomics: gene discovery for agronomic trait development.","authors":"M Menossi, M C Silva-Filho, M Vincentz, M-A Van-Sluys, G M Souza","doi":"10.1155/2008/458732","DOIUrl":"https://doi.org/10.1155/2008/458732","url":null,"abstract":"Sugarcane is a highly productive crop used for centuries as the main source of sugar and recently to produce ethanol, a renewable bio-fuel energy source. There is increased interest in this crop due to the impending need to decrease fossil fuel usage. Sugarcane has a highly polyploid genome. Expressed sequence tag (EST) sequencing has significantly contributed to gene discovery and expression studies used to associate function with sugarcane genes. A significant amount of data exists on regulatory events controlling responses to herbivory, drought, and phosphate deficiency, which cause important constraints on yield and on endophytic bacteria, which are highly beneficial. The means to reduce drought, phosphate deficiency, and herbivory by the sugarcane borer have a negative impact on the environment. Improved tolerance for these constraints is being sought. Sugarcane's ability to accumulate sucrose up to 16% of its culm dry weight is a challenge for genetic manipulation. Genome-based technology such as cDNA microarray data indicates genes associated with sugar content that may be used to develop new varieties improved for sucrose content or for traits that restrict the expansion of the cultivated land. The genes can also be used as molecular markers of agronomic traits in traditional breeding programs.","PeriodicalId":73471,"journal":{"name":"International journal of plant genomics","volume":"2008 ","pages":"458732"},"PeriodicalIF":0.0,"publicationDate":"2008-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2008/458732","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9568492","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 98

Recent Advances in Medicago truncatula Genomics. 苜蓿基因组学研究进展。

International journal of plant genomics Pub Date : 2008-01-01 DOI: 10.1155/2008/256597

Jean-Michel Ané, Hongyan Zhu, Julia Frugoli

引用次数: 57

MaizeGDB: The maize model organism database for basic, translational, and applied research. MaizeGDB:用于基础、转化和应用研究的玉米模式生物数据库。

International journal of plant genomics Pub Date : 2008-01-01 DOI: 10.1155/2008/496957

Carolyn J Lawrence, Lisa C Harper, Mary L Schaeffer, Taner Z Sen, Trent E Seigfried, Darwin A Campbell

{"title":"MaizeGDB: The maize model organism database for basic, translational, and applied research.","authors":"Carolyn J Lawrence, Lisa C Harper, Mary L Schaeffer, Taner Z Sen, Trent E Seigfried, Darwin A Campbell","doi":"10.1155/2008/496957","DOIUrl":"https://doi.org/10.1155/2008/496957","url":null,"abstract":"In 2001 maize became the number one production crop in the world with the Food and Agriculture Organization of the United Nations reporting over 614 million tonnes produced. Its success is due to the high productivity per acre in tandem with a wide variety of commercial uses. Not only is maize an excellent source of food, feed, and fuel, but also its by-products are used in the production of various commercial products. Maize's unparalleled success in agriculture stems from basic research, the outcomes of which drive breeding and product development. In order for basic, translational, and applied researchers to benefit from others' investigations, newly generated data must be made freely and easily accessible. MaizeGDB is the maize research community's central repository for genetics and genomics information. The overall goals of MaizeGDB are to facilitate access to the outcomes of maize research by integrating new maize data into the database and to support the maize research community by coordinating group activities.","PeriodicalId":73471,"journal":{"name":"International journal of plant genomics","volume":" ","pages":"496957"},"PeriodicalIF":0.0,"publicationDate":"2008-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2518694/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"27655284","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 104