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A computational drug design strategy against the Yellow Fever Virus helicase 一种针对黄热病病毒解旋酶的计算药物设计策略
EMBnet.journal Pub Date : 2021-07-08 DOI: 10.14806/EJ.26.A.994
Eleni D Papakonstantinou, Katerina Pierouli, D. Vlachakis, G. Goulielmos, E. Eliopoulos
{"title":"A computational drug design strategy against the Yellow Fever Virus helicase","authors":"Eleni D Papakonstantinou, Katerina Pierouli, D. Vlachakis, G. Goulielmos, E. Eliopoulos","doi":"10.14806/EJ.26.A.994","DOIUrl":"https://doi.org/10.14806/EJ.26.A.994","url":null,"abstract":"© 2021 Papakonstantinou et al.; the authors have retained copyright and granted the Journal right of first publication; the work has been simultaneously released under a Creative Commons Attribution Licence, which allows others to share the work, while acknowledging the original authorship and initial publication in this Journal. The full licence notice is available at http://journal.embnet.org. O ra l P re se nt at io ns","PeriodicalId":72893,"journal":{"name":"EMBnet.journal","volume":"7 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-07-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"79445636","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Expression profiling of non-coding RNA in coronaviruses provides clues for virus RNA interference with the human immune system response 非编码RNA在冠状病毒中的表达谱为病毒RNA干扰人体免疫系统反应提供了线索
EMBnet.journal Pub Date : 2021-07-08 DOI: 10.14806/EJ.26.A.954
A. Consiglio, F. Licciulli, D. Catalano, G. Grillo, D. D’Elia
{"title":"Expression profiling of non-coding RNA in coronaviruses provides clues for virus RNA interference with the human immune system response","authors":"A. Consiglio, F. Licciulli, D. Catalano, G. Grillo, D. D’Elia","doi":"10.14806/EJ.26.A.954","DOIUrl":"https://doi.org/10.14806/EJ.26.A.954","url":null,"abstract":"","PeriodicalId":72893,"journal":{"name":"EMBnet.journal","volume":"24 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-07-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"75523356","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The EMBnet International Conference 2020: Bioinformatics Approaches to Precision Research 2020年EMBnet国际会议:精确研究的生物信息学方法
EMBnet.journal Pub Date : 2021-07-08 DOI: 10.14806/EJ.26.A.1006
D. D’Elia, César Bonavides-Martínez, E. Bongcam-Rudloff, Emiliano Barreto-Hernández, Aspasia Efthimiadou, Eleni D Papakonstantinou, D. Vlachakis, L. Klucar
{"title":"The EMBnet International Conference 2020: Bioinformatics Approaches to Precision Research","authors":"D. D’Elia, César Bonavides-Martínez, E. Bongcam-Rudloff, Emiliano Barreto-Hernández, Aspasia Efthimiadou, Eleni D Papakonstantinou, D. Vlachakis, L. Klucar","doi":"10.14806/EJ.26.A.1006","DOIUrl":"https://doi.org/10.14806/EJ.26.A.1006","url":null,"abstract":"In this paper, we first summarise the 2020 International Conference of EMBnet (The Global Bioinformatics Network) on “Bioinformatics Approaches to Precision  Research”, held on 23th-24th September 2020,  and then briefly introduce the main topics and contributions presented at the Conference and published in this supplement issue. The Conference’s main aim was to share the knowledge and scientific achievements of EMBnet members to prompt the cross-fertilisation of ideas and collaborations.  The title reflects the type of contributions presented (20 in total), covering a wide range of cutting-edge research topics for which advanced bioinformatics methods and precision approaches are essential, and training in Bioinformatics. As for many other organisations, 2020 was the first year that the EMBnet Annual General Meeting was not in presence but ran on a virtual meeting platform because of the pandemic’s travel restrictions to moves. If this situation represented a limitation to our social activities, it allowed us to offer the possibility to attend the Conference to a larger number of researchers (i.e., 190 from 38 different countries). Among all registered people,  148 were following the conference presentations on both days. Under the authors’ permission, presentations were recorded and are available at the EMBnet Conference 2020 playlist on YouTube (https://youtube.com/playlist?list=PLVP2771lOozCHAOgVXBdqPW3oclEmzNIA), whereas the programme is available at the EMBnet Conference 2020 Google Drive folder (https://drive.google.com/file/d/1wWqp_I5vf-1GUlKmbCUq45EDQ9LfbrpC/view)","PeriodicalId":72893,"journal":{"name":"EMBnet.journal","volume":"108 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-07-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"76290410","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
LP-HCLUS: a novel tool for the prediction of relationships between ncRNAs and human diseases LP-HCLUS:预测ncrna与人类疾病关系的新工具
EMBnet.journal Pub Date : 2021-07-08 DOI: 10.14806/EJ.26.A.955
E. Barracchia, Gianvito Pio, D. D’Elia, Michelangelo Ceci
{"title":"LP-HCLUS: a novel tool for the prediction of relationships between ncRNAs and human diseases","authors":"E. Barracchia, Gianvito Pio, D. D’Elia, Michelangelo Ceci","doi":"10.14806/EJ.26.A.955","DOIUrl":"https://doi.org/10.14806/EJ.26.A.955","url":null,"abstract":"© 2021 Barracchia et al.; the authors have retained copyright and granted the Journal right of first publication; the work has been simultaneously released under a Creative Commons Attribution Licence, which allows others to share the work, while acknowledging the original authorship and initial publication in this Journal. The full licence notice is available at http://journal.embnet.org. O ra l P re se nt at io ns","PeriodicalId":72893,"journal":{"name":"EMBnet.journal","volume":"24 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-07-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"83259729","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
In silico characterisation of the gene repertoires of immunoglobulins and T cell receptors of the various inbred laboratory strains of Mus musculus 小家鼠各种近交实验室菌株免疫球蛋白和T细胞受体基因库的计算机表征
EMBnet.journal Pub Date : 2021-07-08 DOI: 10.14806/EJ.26.A.953
Anna Tran, G. Folch, V. Giudicelli, M. Lefranc, S. Kossida
{"title":"In silico characterisation of the gene repertoires of immunoglobulins and T cell receptors of the various inbred laboratory strains of Mus musculus","authors":"Anna Tran, G. Folch, V. Giudicelli, M. Lefranc, S. Kossida","doi":"10.14806/EJ.26.A.953","DOIUrl":"https://doi.org/10.14806/EJ.26.A.953","url":null,"abstract":"","PeriodicalId":72893,"journal":{"name":"EMBnet.journal","volume":"14 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-07-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"80285812","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Single-cell mapping of microRNA expression during cardiac development 心脏发育过程中microRNA表达的单细胞定位
EMBnet.journal Pub Date : 2021-07-08 DOI: 10.14806/EJ.26.A.958
S. Leptidis, Eleni D Papakonstantinou, Katerina Pierouli, Athanasios Mitsis, S. Chlamydas, Aspasia Efthimiadou, G. Chrousos, E. Eliopoulos, E. Hansson, D. Vlachakis
{"title":"Single-cell mapping of microRNA expression during cardiac development","authors":"S. Leptidis, Eleni D Papakonstantinou, Katerina Pierouli, Athanasios Mitsis, S. Chlamydas, Aspasia Efthimiadou, G. Chrousos, E. Eliopoulos, E. Hansson, D. Vlachakis","doi":"10.14806/EJ.26.A.958","DOIUrl":"https://doi.org/10.14806/EJ.26.A.958","url":null,"abstract":"© 2021 Leptidis et al.; the authors have retained copyright and granted the Journal right of first publication; the work has been simultaneously released under a Creative Commons Attribution Licence, which allows others to share the work, while acknowledging the original authorship and initial publication in this Journal. The full licence notice is available at http://journal.embnet.org. O ra l P re se nt at io ns","PeriodicalId":72893,"journal":{"name":"EMBnet.journal","volume":"89 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-07-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"80578158","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Precision Epidemiology of Multi-drug resistant bacteria: bioinformatics tools 多重耐药细菌的精确流行病学:生物信息学工具
EMBnet.journal Pub Date : 2021-07-08 DOI: 10.14806/EJ.26.A.960
John C Donato, L. Lugo, H. Pérez, H. Ballén, Diego Talero, Sebastian Prada, F. Brion, Verónica Rincón, L. Falquet, María T. Reguero, Emiliano Barreto-Hernández
{"title":"Precision Epidemiology of Multi-drug resistant bacteria: bioinformatics tools","authors":"John C Donato, L. Lugo, H. Pérez, H. Ballén, Diego Talero, Sebastian Prada, F. Brion, Verónica Rincón, L. Falquet, María T. Reguero, Emiliano Barreto-Hernández","doi":"10.14806/EJ.26.A.960","DOIUrl":"https://doi.org/10.14806/EJ.26.A.960","url":null,"abstract":"© 2021 Donato et al.; the authors have retained copyright and granted the Journal right of first publication; the work has been simultaneously released under a Creative Commons Attribution Licence, which allows others to share the work, while acknowledging the original authorship and initial publication in this Journal. The full licence notice is available at http://journal.embnet.org. O ra l P re se nt at io ns","PeriodicalId":72893,"journal":{"name":"EMBnet.journal","volume":"7 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-07-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"81639361","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Computer-aided drug design and pharmacophore modelling towards the discovery of novel anti-ebola agents 面向发现新型抗埃博拉药物的计算机辅助药物设计和药效团建模
EMBnet.journal Pub Date : 2021-07-08 DOI: 10.14806/EJ.26.A.961
K. Diakou, G. Chrousos, E. Eliopoulos, D. Vlachakis
{"title":"Computer-aided drug design and pharmacophore modelling towards the discovery of novel anti-ebola agents","authors":"K. Diakou, G. Chrousos, E. Eliopoulos, D. Vlachakis","doi":"10.14806/EJ.26.A.961","DOIUrl":"https://doi.org/10.14806/EJ.26.A.961","url":null,"abstract":"","PeriodicalId":72893,"journal":{"name":"EMBnet.journal","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-07-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"75377549","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genome-wide association studies (GWAS) in an effort to provide insights into the complex interplay of nuclear receptor transcriptional networks and their contribution to the maintenance of homeostasis 全基因组关联研究(GWAS)旨在深入了解核受体转录网络的复杂相互作用及其对维持体内平衡的贡献
EMBnet.journal Pub Date : 2021-07-08 DOI: 10.14806/EJ.26.A.952
Thanasis Mitsis, D. Vlachakis, G. Chrousos, E. Eliopoulos
{"title":"Genome-wide association studies (GWAS) in an effort to provide insights into the complex interplay of nuclear receptor transcriptional networks and their contribution to the maintenance of homeostasis","authors":"Thanasis Mitsis, D. Vlachakis, G. Chrousos, E. Eliopoulos","doi":"10.14806/EJ.26.A.952","DOIUrl":"https://doi.org/10.14806/EJ.26.A.952","url":null,"abstract":"","PeriodicalId":72893,"journal":{"name":"EMBnet.journal","volume":"29 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-07-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"74612902","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
3’-Tag RNA-sequencing 3’-标签RNA-sequencing
EMBnet.journal Pub Date : 2021-07-08 DOI: 10.14806/EJ.26.A.968
Temitayo A. Olagunju, Chisom Ezekannagha, A. Gisel
{"title":"3’-Tag RNA-sequencing","authors":"Temitayo A. Olagunju, Chisom Ezekannagha, A. Gisel","doi":"10.14806/EJ.26.A.968","DOIUrl":"https://doi.org/10.14806/EJ.26.A.968","url":null,"abstract":"","PeriodicalId":72893,"journal":{"name":"EMBnet.journal","volume":"214 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-07-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"77425989","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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