A. Romero, Daniel Althviz Moré, I. Teh, Jürgen Schneider, M. Viallon, P. Croisille
{"title":"Exploring DTI Benchmark Databases Through Visual Analytics","authors":"A. Romero, Daniel Althviz Moré, I. Teh, Jürgen Schneider, M. Viallon, P. Croisille","doi":"10.1007/978-3-030-73018-5_23","DOIUrl":"https://doi.org/10.1007/978-3-030-73018-5_23","url":null,"abstract":"","PeriodicalId":72661,"journal":{"name":"Computational diffusion MRI : MICCAI Workshop","volume":"19 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"90060806","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Muhan Shao, A. Carass, Arnold D. Gomez, J. Zhuo, Xiao Liang, M. Stone, Jerry L Prince
{"title":"Direct Reconstruction of Crossing Muscle Fibers in the Human Tongue Using a Deep Neural Network","authors":"Muhan Shao, A. Carass, Arnold D. Gomez, J. Zhuo, Xiao Liang, M. Stone, Jerry L Prince","doi":"10.1007/978-3-030-73018-5_6","DOIUrl":"https://doi.org/10.1007/978-3-030-73018-5_6","url":null,"abstract":"","PeriodicalId":72661,"journal":{"name":"Computational diffusion MRI : MICCAI Workshop","volume":"27 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"85426251","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Sara Sedlar, T. Papadopoulo, R. Deriche, Samuel Deslauriers-Gauthier
{"title":"Diffusion MRI Fiber Orientation Distribution Function Estimation Using Voxel-Wise Spherical U-Net","authors":"Sara Sedlar, T. Papadopoulo, R. Deriche, Samuel Deslauriers-Gauthier","doi":"10.1007/978-3-030-73018-5_8","DOIUrl":"https://doi.org/10.1007/978-3-030-73018-5_8","url":null,"abstract":"","PeriodicalId":72661,"journal":{"name":"Computational diffusion MRI : MICCAI Workshop","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"88812351","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Gaëtan Rensonnet, Jonathan Rafael-Patino, B. Macq, J. Thiran, G. Girard, Marco Pizzolato Signal Processing Lab, 'Ecole polytechnique f'ed'erale de Lausanne, Lausanne, Switzerland., Icteam Institute, Universit'e catholique de Louvain, Louvain-la-Neuve, Belgium, Center for Computational Imaging, Radiology Department, C. Vaudois, University of Lausanne, D. Mathematics, Computer Science, T. Denmark, Kongens Lyngby, Denmark.
{"title":"A Signal Peak Separation Index for Axisymmetric B-Tensor Encoding","authors":"Gaëtan Rensonnet, Jonathan Rafael-Patino, B. Macq, J. Thiran, G. Girard, Marco Pizzolato Signal Processing Lab, 'Ecole polytechnique f'ed'erale de Lausanne, Lausanne, Switzerland., Icteam Institute, Universit'e catholique de Louvain, Louvain-la-Neuve, Belgium, Center for Computational Imaging, Radiology Department, C. Vaudois, University of Lausanne, D. Mathematics, Computer Science, T. Denmark, Kongens Lyngby, Denmark.","doi":"10.1007/978-3-030-73018-5_3","DOIUrl":"https://doi.org/10.1007/978-3-030-73018-5_3","url":null,"abstract":"","PeriodicalId":72661,"journal":{"name":"Computational diffusion MRI : MICCAI Workshop","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2020-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"72898019","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Qianqian Yang, S. Puttick, Zara C. Bruce, B. Day, V. Vegh
{"title":"Investigation of Changes in Anomalous Diffusion Parameters in a Mouse Model of Brain Tumour","authors":"Qianqian Yang, S. Puttick, Zara C. Bruce, B. Day, V. Vegh","doi":"10.1007/978-3-030-52893-5_14","DOIUrl":"https://doi.org/10.1007/978-3-030-52893-5_14","url":null,"abstract":"","PeriodicalId":72661,"journal":{"name":"Computational diffusion MRI : MICCAI Workshop","volume":"24 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"81251122","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Heejong Kim, Martin Styner, Joseph Piven, Guido Gerig
{"title":"A framework to construct a longitudinal DW-MRI infant atlas based on mixed effects modeling of dODF coefficients.","authors":"Heejong Kim, Martin Styner, Joseph Piven, Guido Gerig","doi":"10.1007/978-3-030-52893-5_13","DOIUrl":"https://doi.org/10.1007/978-3-030-52893-5_13","url":null,"abstract":"<p><p>Building of atlases plays a crucial role in the analysis of brain images. In scenarios where early growth, aging or disease trajectories are of key importance, longitudinal atlases become necessary as references, most often created from cross-sectional data. New opportunities will be offered by creating longitudinal brain atlases from longitudinal subject-specific image data, where explicit modeling of subject's variability in slope and intercept leads to a more robust estimation of average trajectories but also to estimates of confidence bounds. This work focuses on a framework to build a continuous 4D atlas from longitudinal high angular resolution diffusion images (HARDI) where, unlike atlases of derived scalar diffusion indices such as FA, statistics on dODFs is preserved. Multi-scalar images obtained from DW images are used for geometric alignment, and linear mixed-effects modeling from longitudinal diffusion orientation distribution functions (dODF) leads to estimation of continuous dODF changes. The proposed method is applied to a longitudinal dataset of HARDI images from healthy developing infants in the age range of 3 to 36 months. Verification of mixed-effects modeling is obtained by voxel-wise goodness of fit calculations. To demonstrate the potential of our method, we display changes of longitudinal atlas using dODF and derived generalized fractional anisotropy (GFA) of dODF. We also investigate white matter maturation patterns in genu, body, and splenium of the corpus callosum. The framework can be used to build an average dODF atlas from HARDI data and to derive subject-specific and population-based longitudinal change trajectories.</p>","PeriodicalId":72661,"journal":{"name":"Computational diffusion MRI : MICCAI Workshop","volume":"2020 ","pages":"149-159"},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8341566/pdf/nihms-1723534.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9783118","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
M. Pizzolato, M. Palombo, E. Bonet-Carne, W. ChantalM., Tax., Francesco Grussu, A. Ianuş, Fabian Bogusz, Tomasz, Pieciak, L. Ning, H. Larochelle, M. Descoteaux, Maxime, V. Chamberland, Stefano B. Blumberg, T. Mertzanidou, C. Daniel, Alexander, M. Afzali, S. Aja‐Fernández, Derek K. Jones, C. Westin, Y. Rathi, S. Baete, Lucilio, Cordero-Grande, T.R. Ladner, P. Slator, J. Hajnal, J. Thiran, A. Price, F. Sepehrband, Fan, Zhang, J. Hutter
{"title":"Acquiring and Predicting Multidimensional Diffusion (MUDI) Data: An Open Challenge","authors":"M. Pizzolato, M. Palombo, E. Bonet-Carne, W. ChantalM., Tax., Francesco Grussu, A. Ianuş, Fabian Bogusz, Tomasz, Pieciak, L. Ning, H. Larochelle, M. Descoteaux, Maxime, V. Chamberland, Stefano B. Blumberg, T. Mertzanidou, C. Daniel, Alexander, M. Afzali, S. Aja‐Fernández, Derek K. Jones, C. Westin, Y. Rathi, S. Baete, Lucilio, Cordero-Grande, T.R. Ladner, P. Slator, J. Hajnal, J. Thiran, A. Price, F. Sepehrband, Fan, Zhang, J. Hutter","doi":"10.1007/978-3-030-52893-5_17","DOIUrl":"https://doi.org/10.1007/978-3-030-52893-5_17","url":null,"abstract":"","PeriodicalId":72661,"journal":{"name":"Computational diffusion MRI : MICCAI Workshop","volume":"27 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"89480629","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Hassna Irzan, Michael Hütel, Carla Semedo, H. O’Reilly, Manisha Sahota, S. Ourselin, N. Marlow, A. Melbourne
{"title":"A Network-Based Analysis of the Preterm Adolescent Brain Using PCA and Graph Theory","authors":"Hassna Irzan, Michael Hütel, Carla Semedo, H. O’Reilly, Manisha Sahota, S. Ourselin, N. Marlow, A. Melbourne","doi":"10.1007/978-3-030-52893-5_15","DOIUrl":"https://doi.org/10.1007/978-3-030-52893-5_15","url":null,"abstract":"","PeriodicalId":72661,"journal":{"name":"Computational diffusion MRI : MICCAI Workshop","volume":"104 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"88142664","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jonathan Rafael-Patino, Thomas Yu, V. Delvigne, M. Barakovic, M. Pizzolato, G. Girard, Derek K. Jones, Erick Jorge Canales-Rodríguez, J. Thiran
{"title":"DWI Simulation-Assisted Machine Learning Models for Microstructure Estimation","authors":"Jonathan Rafael-Patino, Thomas Yu, V. Delvigne, M. Barakovic, M. Pizzolato, G. Girard, Derek K. Jones, Erick Jorge Canales-Rodríguez, J. Thiran","doi":"10.1007/978-3-030-52893-5_11","DOIUrl":"https://doi.org/10.1007/978-3-030-52893-5_11","url":null,"abstract":"","PeriodicalId":72661,"journal":{"name":"Computational diffusion MRI : MICCAI Workshop","volume":"88 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"72984276","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}