Journal of Chemical Crystallography最新文献

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Supramolecular X-ray and Quantum Chemical Analysis of 4-(2-amino-2-oxoethyl) phenyl 4-methylbenzenesulfonate: A Tosyl Ester Derivative 4-(2-氨基-2-氧代乙基)苯基 4-甲基苯磺酸酯的超分子 X 射线和量子化学分析:对甲苯磺酸酯衍生物
IF 0.4 4区 化学
Journal of Chemical Crystallography Pub Date : 2024-08-17 DOI: 10.1007/s10870-024-01027-0
Daljeet Singh, Ruchika Sharma, Anil Nikam, Jagannath Jadhav, Sagar Sankpal, Saminathan Murugavel, Rajni Kant
{"title":"Supramolecular X-ray and Quantum Chemical Analysis of 4-(2-amino-2-oxoethyl) phenyl 4-methylbenzenesulfonate: A Tosyl Ester Derivative","authors":"Daljeet Singh,&nbsp;Ruchika Sharma,&nbsp;Anil Nikam,&nbsp;Jagannath Jadhav,&nbsp;Sagar Sankpal,&nbsp;Saminathan Murugavel,&nbsp;Rajni Kant","doi":"10.1007/s10870-024-01027-0","DOIUrl":"10.1007/s10870-024-01027-0","url":null,"abstract":"<div><p>4-(2-amino-2-oxoethyl) phenyl 4-methylbenzenesulfonate (APMBS), a novel compound, has been synthesized and characterized by spectro-analytical techniques. X-ray diffraction data reveals it crystallizes in the triclinic crystal system with space group <span>(Poverline{1})</span>. The structure is stabilized through strong N–H⋯O, weak C–H⋯O and C–H⋯π hydrogen bond interactions yielding a supramolecular structure. The N1A–H1AA⋯O4A, C4–H4⋯O3, and C14–H14⋯Cg1 (Ring: C8–C13) interactions link the molecules into dimers, while the interaction C9-H9–O2 results in the formation of a molecular chain along the <i>a</i>-axis. The optimized structural geometry, by and large, as calculated using DFT and HF techniques is in conformity with the corresponding X-ray data. The DFT computation further aid in the follow up investigations including frontier molecular orbitals (FMOs), density of states (DOS), atomic charges, and molecular electrostatic potential surface (MEP). For a comprehensive description of various molecular intersections, Hirsheld surface and fingerprint plots analysis has been reported, besides the combined atoms-in-molecules (QTAIM) and reduced density gradient (RDG) analysis. Docking studies have been performed against the target protein Tubulin-Colchicine: <i>Stathmin-Like Domain Complex</i>.</p><h3>Graphical Abstract</h3>\u0000<div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":615,"journal":{"name":"Journal of Chemical Crystallography","volume":"54 4","pages":"321 - 335"},"PeriodicalIF":0.4,"publicationDate":"2024-08-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142215322","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Synthesis, Crystal Structure, and Properties of a Zn(II) Coordination Polymer from a New Semirigid Tripodal Nitrogen-Containing Heterotopic Ligand 新型半刚性三足含氮异位配体的 Zn(II) 配位聚合物的合成、晶体结构和性质
IF 0.4 4区 化学
Journal of Chemical Crystallography Pub Date : 2024-07-22 DOI: 10.1007/s10870-024-01023-4
Bing-Xun Zhou, Xian Lin, Hui-Qi Xie, Liang-Hua Wu, Chu-Hong Zhang, Hai-Yan Song, Jun Fan, Sheng-Run Zheng
{"title":"Synthesis, Crystal Structure, and Properties of a Zn(II) Coordination Polymer from a New Semirigid Tripodal Nitrogen-Containing Heterotopic Ligand","authors":"Bing-Xun Zhou,&nbsp;Xian Lin,&nbsp;Hui-Qi Xie,&nbsp;Liang-Hua Wu,&nbsp;Chu-Hong Zhang,&nbsp;Hai-Yan Song,&nbsp;Jun Fan,&nbsp;Sheng-Run Zheng","doi":"10.1007/s10870-024-01023-4","DOIUrl":"10.1007/s10870-024-01023-4","url":null,"abstract":"<div><p>A new coordination polymer, namely, {[Zn(DTPP)(H<sub>2</sub>O)<sub>2</sub>]·H<sub>2</sub>O}<sub>n</sub> (H<sub>2</sub>DTPP = 3-(3,5-di(2H-tetrazol-5-yl)phenoxy)pyridine, compound <b>1</b>), was successfully assembled by using a new semirigid tripodal nitrogen-containing heterotopic ligand and characterized by single-crystal X-ray diffraction, elemental analysis, infrared spectroscopy, TG, and luminescence. X-ray single-crystal diffraction analysis revealed that compound 1 crystallizes in an orthorhombic crystal system with space groups of Ibca. It is a 2D coordination network with (4·8<sup>2</sup>) topology, and the 2D networks are further connected by hydrogen bonds between coordinated water molecules and tetrazole N atoms to form a 3D supramolecular framework. Moreover, compound <b>1</b> exhibits intense blue emission centered at 345 nm upon excitation at 276 nm and has the ability to sense Fe<sup>3+</sup> via photoluminescence quenching.</p><h3>Graphical Abstract</h3><p>A new coordination polymer synthesized from a new semirigid tripodal nitrogen-containing heterotopic ligand, {[Zn(DTPP)(H<sub>2</sub>O)<sub>2</sub>]<b>·</b>H<sub>2</sub>O}<sub>n,</sub> was characterized.</p>\u0000<div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":615,"journal":{"name":"Journal of Chemical Crystallography","volume":"54 4","pages":"313 - 320"},"PeriodicalIF":0.4,"publicationDate":"2024-07-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141738569","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Two New Polymorphs of Meso-Chlorinated BODIPY Dyes 中氯化 BODIPY 染料的两种新多晶型
IF 0.4 4区 化学
Journal of Chemical Crystallography Pub Date : 2024-07-21 DOI: 10.1007/s10870-024-01022-5
Paul G. Waddell, Jennifer F. Wallis, Annabelle Mattern, Lee J. Higham
{"title":"Two New Polymorphs of Meso-Chlorinated BODIPY Dyes","authors":"Paul G. Waddell,&nbsp;Jennifer F. Wallis,&nbsp;Annabelle Mattern,&nbsp;Lee J. Higham","doi":"10.1007/s10870-024-01022-5","DOIUrl":"10.1007/s10870-024-01022-5","url":null,"abstract":"<div><p>New polymorphs of (2-(chloro(pyrrol-2-ylidene)methyl)pyrrole)-difluoro-borane (<b>1</b>) and (2-(chloro(4-ethyl-3,5-dimethyl-2H-pyrrol-2-ylidene)methyl)pyrrole)-4-ethyl-3,5-dimethyl-1H-pyrrolato)-difluoro-borane (<b>2</b>) were identified using single crystal X-ray diffraction. The new polymorph of <b>1</b> crystallises in the triclinic, <i>P</i>-1 space group with an asymmetric unit comprising two crystallographically-independent molecules (Z′ = 2). The differences between this structure and that of the known polymorph of <b>1</b> are attributed to the formation of two distinct dimer motifs in each polymorph and the packing between these dimer units. The new polymorph structure of <b>2</b>, exhibits a similar asymmetric unit to the known form, comprising 3 molecules (Zʹ = 3). The two structures differ in the orientation of the molecules within the trimeric asymmetric unit and the manner in which these trimers pack along the crystallographic [010] direction.</p><h3>Graphical Abstract</h3><p>The triclinic polymorph of 8-chloro BODIPY exhibits an asymmetric unit with two crystallographically-independent molecules.</p>\u0000<div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":615,"journal":{"name":"Journal of Chemical Crystallography","volume":"54 4","pages":"305 - 312"},"PeriodicalIF":0.4,"publicationDate":"2024-07-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s10870-024-01022-5.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141738567","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Preparation, Crystal Structure, Optical Properties, Hirshfeld Surface Analysis and Antibacterial Activity of 4-Nitrobenzyl-4-aminopyridinium Tetrachlorocuprate(II) 4-Nitrobenzyl-4-aminopyridinium Tetrachlorocuprate(II) 的制备、晶体结构、光学特性、Hirshfeld 表面分析和抗菌活性
IF 0.4 4区 化学
Journal of Chemical Crystallography Pub Date : 2024-07-17 DOI: 10.1007/s10870-024-01024-3
Yu-Ting Li, Lin Huang, Xin-Ran Li, Bao-Yi Hu, Xiang-Ling Li, Yan Jiang, Jia-Yu Yu, Chun-Lin Ni
{"title":"Preparation, Crystal Structure, Optical Properties, Hirshfeld Surface Analysis and Antibacterial Activity of 4-Nitrobenzyl-4-aminopyridinium Tetrachlorocuprate(II)","authors":"Yu-Ting Li,&nbsp;Lin Huang,&nbsp;Xin-Ran Li,&nbsp;Bao-Yi Hu,&nbsp;Xiang-Ling Li,&nbsp;Yan Jiang,&nbsp;Jia-Yu Yu,&nbsp;Chun-Lin Ni","doi":"10.1007/s10870-024-01024-3","DOIUrl":"10.1007/s10870-024-01024-3","url":null,"abstract":"<div><p>In this study, we have synthesized a novel organic–inorganic hybrid crystal 4-nitrobenzyl-4-aminopyridinium tetrachlorocuprate(II) [4NO<sub>2</sub>Bz-4NH<sub>2</sub>Py]<sub>2</sub>[CuCl<sub>4</sub>](<b>1</b>). The single-crystal X-ray diffraction analysis revealed that the crystal belongs to the triclinic space group <i>P</i>–1, and consists of four [4NO<sub>2</sub>Bz-4NH<sub>2</sub>Py]<sup>+</sup> cations and two [CuCl<sub>4</sub>]<sup>2−</sup> anions. O⋯π, C–H⋯π, π⋯π, N–H⋯Cl, C–H⋯Cl, C–H⋯O, and C–H⋯N weak interactions in the crystals play an important role in facilitating the stacking and stabilization of the crystals. The different types of contribution have been quantified by the calculation of Hirshfeld surface percentage and depicted by fingerprint plots. The bulk phase purity, homogeneity, and morphology of the desired compound were checked using powder XRD, and SEM–EDX analysis. Vibrational, optical, and thermal properties were investigated by FT-IR, UV–Vis spectrum, and TG–DTA measurements of [4NO<sub>2</sub>Bz-4NH<sub>2</sub>Py]<sub>2</sub>[CuCl<sub>4</sub>](<b>1</b>), respectively. The low energy gap (2.41 eV) suggested that the crystal was a suitable semiconductor material for optical applications. In addition, the compound presented good bactericidal activity against <i>E. coli</i> and <i>S. aureus</i>.</p><h3>Graphical Abstract</h3><p>A novel organic–inorganic hybrid material, 4-nitrobenzyl-4-aminopyridinium tetrachlorocuprate(II), has been synthesised and characterized with a study of its crystal structure, vibrational spectra, weak interaction, Hirshfield surface, thermal stability and antibacterial activity.</p><div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":615,"journal":{"name":"Journal of Chemical Crystallography","volume":"54 4","pages":"291 - 304"},"PeriodicalIF":0.4,"publicationDate":"2024-07-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141738568","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A New Polymorph of tert-Butyl (2-Aminophenyl)Carbamate (2-氨基苯基)氨基甲酸叔丁酯的一种新的多聚物
IF 0.4 4区 化学
Journal of Chemical Crystallography Pub Date : 2024-06-17 DOI: 10.1007/s10870-024-01021-6
Zoe E. Potter, Max T. Hill, Jonathan D. Sellars, Paul G. Waddell
{"title":"A New Polymorph of tert-Butyl (2-Aminophenyl)Carbamate","authors":"Zoe E. Potter,&nbsp;Max T. Hill,&nbsp;Jonathan D. Sellars,&nbsp;Paul G. Waddell","doi":"10.1007/s10870-024-01021-6","DOIUrl":"10.1007/s10870-024-01021-6","url":null,"abstract":"<div><p>A new polymorph of <i>tert</i>-butyl (2-aminophenyl)carbamate was identified using single crystal X-ray diffraction. The compound crystallised in the centrosymmetric, monoclinic space group <i>P</i>2<sub>1</sub>/<i>n</i> with an asymmetric unit comprising two crystallographically-independent molecules (Zʹ = 2). This new structure was compared to that of the known polymorph with the differences between the two being attributed to a combination of space group symmetry, conformational variation, hydrogen bonding network dimensionality and crystal packing.</p></div>","PeriodicalId":615,"journal":{"name":"Journal of Chemical Crystallography","volume":"54 4","pages":"285 - 290"},"PeriodicalIF":0.4,"publicationDate":"2024-06-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s10870-024-01021-6.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141508723","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
7-Dimethylamino-4-Hydroxycoumarin and Derivatives: Enhanced β-Chain Hydrogen-Bonding 7-二甲基氨基-4-羟基香豆素及其衍生物:增强的 β 链氢键作用
IF 0.4 4区 化学
Journal of Chemical Crystallography Pub Date : 2024-05-30 DOI: 10.1007/s10870-024-01020-7
Elisei Cosovan, Victor Cosovan, Daniel A. Osborne, David H. Magers, Edward J. Valente
{"title":"7-Dimethylamino-4-Hydroxycoumarin and Derivatives: Enhanced β-Chain Hydrogen-Bonding","authors":"Elisei Cosovan,&nbsp;Victor Cosovan,&nbsp;Daniel A. Osborne,&nbsp;David H. Magers,&nbsp;Edward J. Valente","doi":"10.1007/s10870-024-01020-7","DOIUrl":"10.1007/s10870-024-01020-7","url":null,"abstract":"<div><p>\u0000 The crystal and molecular structure of 7-dimethylamino-4-hydroxycoumarin as its hydrate (<b>1</b>, C<sub>11</sub>H<sub>11</sub>NO<sub>3</sub> • H<sub>2</sub>O) has been determined. Crystals are monoclinic, space group <i>P</i>2(1)/<i>n</i> with <i>a</i> = 7.1435(4) Å, <i>b</i> = 20.1763(6) Å, <i>c</i> = 7.8590(3) Å, <i>β</i> = 110.018(5)<sup>o</sup> and V = 1064.28(8)Å<sup>3</sup> for 4 formula units per cell. Both coumarin enol ester hydroxy and carboxy groups engage in hydrogen-bonding with the water of crystallization. Several 3-substituted derivatives were prepared from this material including 7-dimethylamino-3-benzyl-4-hydroxycoumarin (<b>2</b>) and 7-dimethylaminowarfarin (<b>4</b>). Compound <b>2</b> (C<sub>18</sub>H<sub>16</sub>NO<sub>3</sub>) crystallizes in the triclinic system, space group <i>P</i>-1, with <i>a</i> = 7.0180(7) Å, <i>b</i> = 7.8143(7) Å, <i>c</i> = 14.3158(10) Å, <i>α</i> = 90.586(6)<sup>o</sup>, <i>β</i> = 94.738(5)<sup>o</sup>, <i>γ</i> = 104.639(7)<sup>o</sup>, and V = 756.57(9) Å<sup>3</sup> for 2 molecules in the cell. For compound <b>2</b>, the crystal structure shows infinite hydrogen-bonded translational β-chains linking well aligned hydroxy and ester carboxy groups with a repeat distance of 7.018 Å. The dipolar nature of the substituted 4-hydroxycoumarin strengthens the β-chains compared to unsubstituted systems in which the repeat is longer and weaker at 7.17 Å. Computations (DFT) support the bond length changes due to a dipolar influence of the 7-dimethylamino group (compared to the unsubstituted compounds), and a more negative carboxy oxygen hydrogen-bond acceptor. For compound <b>4</b> (C<sub>21</sub>H<sub>21</sub>NO<sub>4</sub>), a stereoselective synthesis allowed preparation of the (S)-isomer which crystallized in the orthorhombic system, space group <i>P</i>2(1)2(1)2(1), with <i>a</i> = 6.7857(3) Å, <i>b</i> = 14.7140(5) Å, <i>c</i> = 17.4652(7) Å and V = 1743.81(12) Å<sup>3</sup> for 4 molecules in the cell. Compound <b>4</b> forms the <i>trans</i> cyclic hemiketal from methanol in the crystal. In CDCl<sub>3</sub> solution (298 K), <b>4</b> exists as an equilibrium mixture of three tautomers: 12.8% open form, 45.5% <i>cis</i> hemiketal and 41.7% <i>trans</i> hemiketal (coumarin forms).</p><h3>Graphical Abstract</h3><div><figure><div><div><picture><source><img></source></picture></div><div><p>\u0000 Elisei Cosovan, Victor Cosovan, Daniel A. Osborne, David H. Magers, Edward J. Valente-3-Benzyl-4-hydroxy-7-dimethylaminocoumarin forms enhanced translational β-chain hydrogen-bonded arrays in the crystal</p></div></div></figure></div></div>","PeriodicalId":615,"journal":{"name":"Journal of Chemical Crystallography","volume":"54 3","pages":"274 - 284"},"PeriodicalIF":0.4,"publicationDate":"2024-05-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141197005","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Synthesis, Structural Elucidation and DNA-Binding Studies of Centrosymmetric Paddlewheel Copper Carboxylate Complexes 中心对称桨轮羧酸铜配合物的合成、结构阐明和 DNA 结合研究
IF 0.4 4区 化学
Journal of Chemical Crystallography Pub Date : 2024-05-28 DOI: 10.1007/s10870-024-01018-1
Afifa Mushtaq, Muhammad Iqbal, Zahid Rashid, Khadija Shahid, Muhammad Nawaz Tahir, Saqib Ali
{"title":"Synthesis, Structural Elucidation and\u0000 DNA-Binding Studies of Centrosymmetric Paddlewheel Copper Carboxylate\u0000 Complexes","authors":"Afifa Mushtaq,&nbsp;Muhammad Iqbal,&nbsp;Zahid Rashid,&nbsp;Khadija Shahid,&nbsp;Muhammad Nawaz Tahir,&nbsp;Saqib Ali","doi":"10.1007/s10870-024-01018-1","DOIUrl":"10.1007/s10870-024-01018-1","url":null,"abstract":"<div><p>Synthesis, characterization and structural relevance of four new copper\u0000 carboxylate complexes (<b>1</b>–<b>4</b>) has been presented here. The complexes have been\u0000 synthesized by direct treatment of the substituted phenyl acetate and pyridine\u0000 ligands in aqueous medium. The complexes were stable indefinitely with excellent\u0000 yields and were characterized using spectroscopic and single crystal XRD techniques.\u0000 FTIR spectroscopy revealed the bridging bidentate coordination mode for the\u0000 carboxylate moiety in accordance to the actual structure revealed by XRD. Moreover,\u0000 UV-Visible spectroscopic and cyclic voltammetric studies helped in their\u0000 characterization and yielded signals which were typical of the copper(II) complexes.\u0000 Successfully solved single crystal XRD data showed binuclear paddlewheel structures\u0000 for all the complexes with both copper ions linked through four OCO bridges of\u0000 ortho-methoxy phenyl acetate (<b>1</b>–<b>3</b>) and ortho-methyl-meta-nitrophenyl acetate (<b>4</b>). The geometry around each copper was distorted square\u0000 pyramidal where the apical positions are occupied by meta-bromopyridine (<b>1</b>), meta-methylpyridine (<b>2</b>) and DMSO (<b>3</b> and <b>4</b>) molecules. The complexes exhibited excellent\u0000 DNA-binding activity majorly via intercalation as revealed by four experimental\u0000 techniques. This preliminary study showed that the synthesized complexes add to the\u0000 existing treasury on the paddlewheel complexes.</p><h3>The Index Abstract</h3><p>Air stable newly synthesized and purified crystalline complexes\u0000 with their preliminary structural relevance.</p>\u0000 <div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":615,"journal":{"name":"Journal of Chemical Crystallography","volume":"54 3","pages":"261 - 273"},"PeriodicalIF":0.4,"publicationDate":"2024-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141169699","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Crystal Structure of 2-(Ethoxymethylene)Malononitrile, Hirshfeld Surface Analysis and DFT Evaluation of the Non-covalent Interactions Energy 2-(乙氧基亚甲基)丙二腈的晶体结构、Hirshfeld 表面分析和非共价相互作用能量的 DFT 评估
IF 0.4 4区 化学
Journal of Chemical Crystallography Pub Date : 2024-05-18 DOI: 10.1007/s10870-024-01019-0
Vyacheslav S. Grinev, Ilya A. Demeshko, Anna E. Sklyar, Maksim V. Dmitriev, Alevtina Yu. Yegorova
{"title":"Crystal Structure of 2-(Ethoxymethylene)Malononitrile, Hirshfeld Surface Analysis and DFT Evaluation of the Non-covalent Interactions Energy","authors":"Vyacheslav S. Grinev,&nbsp;Ilya A. Demeshko,&nbsp;Anna E. Sklyar,&nbsp;Maksim V. Dmitriev,&nbsp;Alevtina Yu. Yegorova","doi":"10.1007/s10870-024-01019-0","DOIUrl":"10.1007/s10870-024-01019-0","url":null,"abstract":"<div><p>The presented study describe the crystal structure of 2-(Ethoxymethylene)malononitrile (<b>1</b>), C<sub>6</sub>H<sub>6</sub>N<sub>2</sub>O, in the monoclinic space group <i>P</i>2<sub>1</sub>/<i>m</i> with <i>Z</i> = 2, <i>a</i> = 6.798(3), <i>b</i> = 6.172(3), <i>c</i> = 8.844(5) Å. The unit cell of a single crystal of <b>1</b> contains two antiparallel oriented molecules. Ethyl fragment demonstrates a disorder with equal occupancy values of 0.5 and a total site-occupation factor (s.o.f.) of 1.0. The molecules of <b>1</b> are linked into infinite chains of co-oriented molecules parallel to the <i>a</i> axis via N-H···N ≡ C close contacts with the distance of 2.494(3) Å. There are also weak hydrogen bonds &gt; O···H- between the oxygen atom and the ethyl moiety. The estimation of the energy of non-covalent interactions was conducted by DFT method with different functionals. The best reproducibility of the geometric parameters of those interactions was obtained by using M06-2X functional. The estimated energy value was found to be − 1.20 kcal/mol.</p><h3>Graphical Abstract</h3><div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":615,"journal":{"name":"Journal of Chemical Crystallography","volume":"54 3","pages":"253 - 260"},"PeriodicalIF":0.4,"publicationDate":"2024-05-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141061954","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Interplay Between Conformation and Hydrogen Bond Pattern: Crystal Structure of N-(2,2-dichloroacetyl)-N',N"-dipropylphosphoric Triamide and a Database Survey 构象与氢键模式之间的相互作用:N-(2,2-二氯乙酰基)-N',N"-二丙基磷酸三酰胺的晶体结构和数据库调查
IF 0.4 4区 化学
Journal of Chemical Crystallography Pub Date : 2024-05-15 DOI: 10.1007/s10870-024-01015-4
Narjess Peyman, Mehrdad Pourayoubi, Ehteram Mohammadi Gooshki, Marek Nečas
{"title":"Interplay Between Conformation and Hydrogen Bond Pattern: Crystal Structure of N-(2,2-dichloroacetyl)-N',N\"-dipropylphosphoric Triamide and a Database Survey","authors":"Narjess Peyman,&nbsp;Mehrdad Pourayoubi,&nbsp;Ehteram Mohammadi Gooshki,&nbsp;Marek Nečas","doi":"10.1007/s10870-024-01015-4","DOIUrl":"10.1007/s10870-024-01015-4","url":null,"abstract":"<div><p>The interplay between conformation and hydrogen bond pattern was studied in 211 (C(O)NH)(N)<sub>2</sub>P(O)-based phosphoric triamides retrieved from the Cambridge Structural Database (CSD) and one new molecular structure, (CHCl<sub>2</sub>C(O)NH)(CH<sub>3</sub>CH<sub>2</sub>CH<sub>2</sub>NH)<sub>2</sub>P(O). The O═C–N–P and C–N–P═O torsion angles were extracted for the conformational study of the C(O)NP(O) segment, and the conformations of ±<i>sp</i>±<i>ap</i>, ±<i>sp</i>±<i>sc</i> and ±<i>ap</i>±<i>sp</i> were found (<i>sp</i> = synperiplanar, <i>ap</i> = antiperiplanar, <i>sc</i> = synclinal). The conformations of hydrogen bond donor group(s) with respect to the acceptor group(s) were also considered. The investigated structures belong to three classes of (RC(O)NH)(R<sup>1</sup>R<sup>2</sup>N)<sub>2</sub>P(O) (R<sup>1</sup> and R<sup>2</sup> ≠ H), (RC(O)NH)(R<sup>1</sup>NH)<sub>2</sub>P(O) (R<sup>1</sup> ≠ H) and heterocyclic (RC(O)NH)P(O)[NR<sup>1</sup>]<sub>2</sub>R<sup>2</sup> phosphoric triamides (R<sup>1</sup> = H or ≠ H, R<sup>2</sup> = a hydrocarbon fragment), and the hydrogen bond patterns include dimer, tetramer, chain, tape, ladder, two-dimensional assembly and three-dimensional architecture. In the new structure, the conformation of the C(O)NP(O) fragment is <i>–sp+ap</i>, and molecules are assembled in a tape arrangement (parallel to the [110] axis) through N<sub>CP</sub>–H···O═P and N<sub>P</sub>–H···O═C hydrogen bonds (N<sub>CP</sub> is the nitrogen atom of the C(O)NHP(O) fragment and N<sub>P</sub> is the other N atom bonded to phosphorus).</p><h3>Graphical Abstract</h3><p>The interplay between conformation and hydrogen bond pattern was studied in 211 (C(O)NH)(N)<sub>2</sub>P(O)-based phosphoric triamides retrieved from the Cambridge Structural Database (CSD) and one new structure, (CHCl<sub>2</sub>C(O)NH)(CH<sub>3</sub>CH<sub>2</sub>CH<sub>2</sub>NH)<sub>2</sub>P(O).</p>\u0000<div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":615,"journal":{"name":"Journal of Chemical Crystallography","volume":"54 3","pages":"242 - 252"},"PeriodicalIF":0.4,"publicationDate":"2024-05-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140974106","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Synthesis, Crystal Structure and Circular Dichroism Property of a Homochiral Ni-MOF Based on D-Camphorate-Derived Enantiopure Ligand 基于樟脑衍生的对映体纯配体的同手性 Ni-MOF 的合成、晶体结构和圆二色性
IF 0.4 4区 化学
Journal of Chemical Crystallography Pub Date : 2024-05-08 DOI: 10.1007/s10870-024-01017-2
Mengying Liu, Mingyuan Lei, Yang Shi, Qingfu Zhang
{"title":"Synthesis, Crystal Structure and Circular Dichroism Property of a Homochiral Ni-MOF Based on D-Camphorate-Derived Enantiopure Ligand","authors":"Mengying Liu,&nbsp;Mingyuan Lei,&nbsp;Yang Shi,&nbsp;Qingfu Zhang","doi":"10.1007/s10870-024-01017-2","DOIUrl":"10.1007/s10870-024-01017-2","url":null,"abstract":"<div><p>A homochiral metal-organic framework, [Ni(D-L)(py)<sub>2</sub>(H<sub>2</sub>O)<sub>2</sub>]<sub>n</sub> (<b>1</b>) [D-H<sub>2</sub>L = 4,4′-[[(1<i>R</i>,3<i>S</i>)-1,2,2-trimethylcyclopentane-1,3-dicarbonyl]bis-(azanediyl)]dibenzoic acid], has been successfully synthesized based on D-camphorate-derived enantiopure ligand. <b>1</b> was characterized by single-crystal X-ray diffraction (SCXRD), powder X-ray diffraction (PXRD), Fourier transform infrared spectral analysis (FTIR), thermogravimetric analysis (TGA) and the circular dichroism (CD) spectrum. The experimental results show that <b>1</b> features a homochiral triple helix and is formed a 3D supramolecular framework by supramolecular interactions. In addition, the circular dichroism (CD) spectrum verifies the chirality introduction from the ligand to crystal. The successful preparation of the homochiral Ni-MOF provides more possibilities of employing the chiral ligand to produce various chiral MOFs.</p><h3>Graphical Abstract</h3><div><figure><div><div><picture><source><img></source></picture></div><div><p>A homochiral Ni(II)-MOF <b>1</b> was prepared by using D-camphorate-derived enantiopure ligand under solvothermal condition, in which the chirality of <b>1</b> was confirmed by the circular dichroism (CD) spectrum</p></div></div></figure></div></div>","PeriodicalId":615,"journal":{"name":"Journal of Chemical Crystallography","volume":"54 3","pages":"234 - 241"},"PeriodicalIF":0.4,"publicationDate":"2024-05-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140933073","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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