Journal of Crustacean Biology最新文献

{"title":"Genomic survey sequencing and complete mitochondrial genome of the elkhorn coral crab <i>Domecia acanthophora</i> (Desbonne in Desbonne &amp; Schramm, 1867) (Decapoda: Brachyura: Domeciidae)","authors":"Henrique Bravo, J Antonio Baeza, Sancia E T van der Meij","doi":"10.1093/jcbiol/ruad046","DOIUrl":"https://doi.org/10.1093/jcbiol/ruad046","url":null,"abstract":"Abstract The elkhorn coral crab Domecia acanthophora inhabits shallow-water coral reefs in the Western Atlantic. The species has a wide distribution and, although primarily associated with endangered Acropora corals, has been recorded from a myriad of hosts. Here we conducted the first genomic survey and complete mitochondrial assemblage and characterisation of any species of Domeciidae, as well as the first species within Trapezioidea. The estimated size of the nuclear genome ranged from 0.64 Gbp to 1.76 Gbp, revealing a small genome. Repetitive elements of the genome were estimated here at 66.4% and 74%, respectively, with the majority of the repetitive elements consisting of LINE, LTR, and satellite DNA. The assembled A-T rich mitochondrial genome consisted of 15,568 bp in length, with 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes and two ribosomal RNA (rRNA) genes. A 619 bp long non-coding region was identified as the supposed D-loop/control region, containing eight microsatellites. The 22 tRNA genes, ranging from 65 to 71 bp in length, displayed a typical “cloverleaf” secondary structure, with the exception of tRNA-Ser1 which lacked part of the DHU arm and tRNA-Asp displayed a deletion of the TΨC loop but not the arm. Two transposition events of two tRNA genes were also found when comparing the gene order of D. acanthophora to that of the brachyuran basic gene order, which had not been reported before. Despite belonging to a widely distributed, well-known superfamily of coral-associated crabs, the Trapezioidea, very little was known about this species from a genetics perspective, which is remedied here by providing a new genomic resource for D. acanthophora.","PeriodicalId":54850,"journal":{"name":"Journal of Crustacean Biology","volume":"3 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-08-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135520070","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Observations of the association by early-juvenile western rock lobster <i>Panulirus cygnus</i> with seagrass assemblages (Decapoda: Achelata: Palinuridae)","authors":"Daphne Oh, Tim J Langlois, Michael A Brooker, Hugo Salinas, Jason R How, Simon N de Lestang","doi":"10.1093/jcbiol/ruad045","DOIUrl":"https://doi.org/10.1093/jcbiol/ruad045","url":null,"abstract":"Abstract The fishery of the western rock lobster, Panulirus cygnusGeorge, 1962, is Australia’s most valuable wild-caught single-species fishery. Recruitment in some regions of the fishery was observed to be significantly lower than expected after the 2010/2011 West Australian marine heatwave that caused extensive disturbance of dominant coastal habitats. This event generated interest in the study of the factors influencing survival and recruitment of post-larval benthic P. cygnus after settlement. The habitat associations of the highly cryptic post-settlement early-juveniles were previously unknown, with only anecdotal observations of individuals within limestone crevices in nearshore habitats. Our study used early-juveniles derived from ongoing monitoring of puerulus settlement to examine their habitat association mechanism in mesocosm experiments. Comparison of common nearshore habitat assemblages (bare sand, limestone crevices, and seagrasses (Posidonia and Amphibolis) at varying seagrass densities) found that most early-juveniles associated strongly with Amphibolis assemblages at high stem densities (~2,100 stems m–2). A shift in association between Amphibolis fronds and stems at high stem density to Amphibolis-shaded sand and leaf debris at low stem density indicated active habitat selection by early-juveniles. Habitat choices were tested with the scents of prey items and habitat types within Amphibolis assemblages using Y-maze bioassays. No significant olfactory choices were found, suggesting that habitat associations may be driven by multiple cues. Our study provides new laboratory-based insights into the habitat association of early-juvenile P. cygnus and suggests changes in seagrass assemblage identity and density are likely to be important. Further experimentation is needed to define the cues driving these patterns. The impact of habitat change on recruitment in this important fishery remains unknown and should be an objective of future research.","PeriodicalId":54850,"journal":{"name":"Journal of Crustacean Biology","volume":"23 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-08-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135520526","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Null models to explain highly diverse community of intertidal decapods on a temperate rocky coast in Antofagasta, northern Chile (23º27ʹS)","authors":"P. R. De los Ríos-Escalante, E. Ibáñez-Arancibia, C. Esse, O. Zúñiga, M. Fajardo, F. Ghory","doi":"10.1093/jcbiol/ruad048","DOIUrl":"https://doi.org/10.1093/jcbiol/ruad048","url":null,"abstract":"\u0000 The decapod fauna on intertidal shores in northern Chile is characterized by its relatively high diversity and abundance due to the presence of continuous upwelling by the Humboldt Current, which results in a high productivity. The decapod fauna on intertidal rocky shores is characterized by coexisting species that inhabits in natural shelters such as cracks and eroded rocks, as well as among macroalgae. We aimed to monitor the brachyuran and anomuran (porcellanid) crabs in three intertidal sites during two periods of time in September-December 2019 in the Antofagasta region, one site without human intervention and two sites in the city of Antofagasta, for which we applied null models in ecology. We assumed that the communities are random, a viewpoint that is more robust because it reduces the risk of error type I. The results of the application of null models on the co-occurrence species revealed that species associations are mainly structured for all sites, whereas the niche-sharing null model revealed that the reported species did not share ecological niches and in consequence there is not interspecific competition. The results would probably indicate that the species of intertidal decapods have a micro-specific ecological-niche differentiation, which would explain the existence of structured pattern in species associations. The results were compared with information for other sites along the continental Chilean coast.","PeriodicalId":54850,"journal":{"name":"Journal of Crustacean Biology","volume":" ","pages":""},"PeriodicalIF":1.1,"publicationDate":"2023-08-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46341929","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Variation and taphonomic implications of composition in modern and fossil malacostracan cuticles (Decapoda: Malacostraca)","authors":"R. Plotnick, S. McCarroll","doi":"10.1093/jcbiol/ruad047","DOIUrl":"https://doi.org/10.1093/jcbiol/ruad047","url":null,"abstract":"\u0000 The crustacean fossil record is dominated by mineralized forms. These fossils, in turn, are mainly decapod chelae or parts of chelae. Studies of the composition of modern crustacean cuticles have likewise been dominated by decapods. We summarize major element chemical analyses (Ca, Mg, Na, P) using SEM-EDS of modern crustacean exoskeletons from Bermuda, Georgia (USA), and Lake Tanganyika (Burundi). Although most specimens were brachyuran and anomuran crabs, material also included examples of stomatopods, isopods, caridean shrimps, and achelatans. Transects were made of sections of the carapace, palm of the propodus, and tips of either the dactyl or propodus. Multiple transects were made of the Bermudan land crab Gecarcinus lateralis. Additional studies were made of brachyuran fossil crabs from Texas and South Dakota and of brachyuran crabs having undergone ten months of burial in marine sediments. Overall, the tips of the chela were the thickest and most heavily mineralized regions and had the lowest phosphorus content. In nearly all cases, they also had the lowest ratios of Mg to Ca. One notable exception was Gecarcinus, where the denticles had elevated Mg:Ca values. Anomura and Brachyura had markedly different composition from Stomatopoda and possibly Isopoda, suggestive of independent evolutionary origins of biomineralization within the Crustacea. There were also significant differences in composition between brachyuran crabs from Georgia and Bermuda, perhaps due to differences in water temperature. The fossil crustaceans had much more phosphate in their cuticles, likely as a result of diagenetic processes. Composition should be a first order control on the fossil record of crustaceans. Future studies need to expand the taxonomic and geographic ranges of material examined, determine whether there are environmental controls on composition, and explore the relevant diagenetic processes.","PeriodicalId":54850,"journal":{"name":"Journal of Crustacean Biology","volume":" ","pages":""},"PeriodicalIF":1.1,"publicationDate":"2023-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49071357","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Grazing activity of Clibanarius corallinus (H. Milne Edwards, 1848) (Decapoda: Anomura: Diogenidae) on epilithic algae in Australian coral reefs","authors":"H. Bravo, I. Tibbetts","doi":"10.1093/jcbiol/ruad044","DOIUrl":"https://doi.org/10.1093/jcbiol/ruad044","url":null,"abstract":"\u0000 Following an incidental observation of captive Clibanarius corallinus (H. Milne Edwards, 1848) supposedly removing algae from each other’s shells, we conducted a feeding experiment over 72 hours to understand its potential role as a mesograzer in coral reef ecosystems. Epiphyte-covered, coral rubble fragments of Acropora spp. were exposed to hermit crab (N = 41) activity for 72 h in a flow-through seawater aquarium system at Heron Island, southern Great Barrier Reef, Australia to understand whether hermit crabs could remove epilithic algae and if so, to what extent. Coral fragments exposed to the hermit crabs had 9.1% less chlorophyll at the end of the experiment. The detritus generated in the experimental set-up had 2.4 times more chlorophyll and 33.4% less organic biomass than the detritus generated in the control environment. The crabs did on average lose 0.11 g of their initial weight, which could have been a consequence of the experimental set-up. These results suggest that C. corallinus has the potential to contribute to the control of epilithic algae in coral reefs, with such effect having hitherto been overlooked as a result of the cryptic behaviour of this hermit crab species.","PeriodicalId":54850,"journal":{"name":"Journal of Crustacean Biology","volume":" ","pages":""},"PeriodicalIF":1.1,"publicationDate":"2023-08-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49440960","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Benchmarking global biodiversity of decapod crustaceans (Crustacea: Decapoda)","authors":"S. De Grave, W. Decock, S. Dekeyzer, Peter J F Davie, C. Fransen, C. Boyko, G. Poore, E. Macpherson, S. Ahyong, K. Crandall, Valentin de Mazancourt, M. Osawa, T. Chan, P. Ng, R. Lemaitre, S. E. T. van der Meij, S. Santos","doi":"10.1093/jcbiol/ruad042","DOIUrl":"https://doi.org/10.1093/jcbiol/ruad042","url":null,"abstract":"\u0000 A new assessment of the global biodiversity of decapod Crustacea (to 31 December 2022) records 17,229 species in 2,550 genera and 203 families. These figures are derived from a well-curated dataset maintained on the online platform DecaNet, a subsidiary of the World Register of Marine Species (WoRMS). Distinct phases are recognised in the discovery process (as measured by species descriptions) corresponding to major historical and geopolitical time periods, with the current rate of species descriptions being more than three times higher than in the Victorian age of global exploration. Future trends are briefly explored, and it is recognised that a large number of species remain to be discovered and described.","PeriodicalId":54850,"journal":{"name":"Journal of Crustacean Biology","volume":" ","pages":""},"PeriodicalIF":1.1,"publicationDate":"2023-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46458011","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"First record of leucism in a primary burrowing crayfish: Distocambarus crockeri Hobbs & Carlson, 1983 (Decapoda: Astacidea: Cambaridae) from South Carolina, USA","authors":"Megan B Stubbs, Hogan D Wells, Zanethia C. Barnett, M. Kendrick, Zachary J. Loughman, Zackary A. Graham","doi":"10.1093/jcbiol/ruad043","DOIUrl":"https://doi.org/10.1093/jcbiol/ruad043","url":null,"abstract":"\u0000 The piedmont prairie burrowing crayfish, Distocambarus crockeri Hobbs & Carlson, 1983, is a primary burrowing crayfish endemic to South Carolina, USA. The species is the most widely distributed and studied of the five species of Distocambarus Hobbs, 1981. Surveys have clarified the species distribution and habitat, but, like other burrowing crayfishes, our understanding of its ecology is lacking. We report the discovery of two leucistic specimens of D. crockeri collected in an ephemeral pool in a roadside ditch on 14 March 2022 in Edgefield County, South Carolina. To the best of our knowledge, our discovery represents the first documented case of leucism in a primary burrowing crayfish. We discuss the significance of this observation in relation to other recorded observations of color anomalies throughout crayfishes as well as potential environmental causes of leucism.","PeriodicalId":54850,"journal":{"name":"Journal of Crustacean Biology","volume":" ","pages":""},"PeriodicalIF":1.1,"publicationDate":"2023-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43297379","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"The use of three-dimensional uCT imaging technique in the description of a new species of <i>Stenopus</i> Latreille, 1819 (Decapoda: Stenopodidea: Stenopodidae), with a revised key to the species of <i>Stenopus</i>","authors":"Chien-Lin Chen, Tin-Yam Chan","doi":"10.1093/jcbiol/ruad041","DOIUrl":"https://doi.org/10.1093/jcbiol/ruad041","url":null,"abstract":"Abstract Members of the shrimp genus StenopusLatreille, 1819 generally inhabit shallow-water coral reefs. Individuals are colorful, with many of them highly sought in the aquarium trade. A recent biodiversity cruise to the Saya de Malha Banks in the western Indian Ocean collected a new species of Stenopus from rather deep waters, at 192–216 m depth. This species is unusual in having a long rostrum overreaching the scaphocerite and a red and white color pattern, unique for Stenopus. A badly damaged specimen from French Polynesia likely belongs to the new species. The characteristics of the new species are illustrated by X-ray microcomputed tomography images (uCT imaging), line drawings, and color photographs. A key is also provided for the 12 known species of Stenopus.","PeriodicalId":54850,"journal":{"name":"Journal of Crustacean Biology","volume":"3 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-07-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134919940","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Molecular species delimitation reveals hidden endemism in Faxonius placidus (Hagen 1870) (Decapoda: Astacidea: Cambaridae) in southeastern USA","authors":"Parker L Hildreth, C. Hurt, Jeffrey W. Simmons, Carl E. Williams, B. Leckie","doi":"10.1093/jcbiol/ruad040","DOIUrl":"https://doi.org/10.1093/jcbiol/ruad040","url":null,"abstract":"\u0000 Molecular surveys are critical for understanding species boundaries and evolutionary relationships of North American crayfishes, as traditional morphological characters used for taxonomy frequently misrepresent crayfish diversity. The bigclaw crayfish, Faxonius placidus (Hagen, 1870), is currently described as a widely distributed crayfish that is common throughout the Cumberland, Tennessee, and Lower Ohio river drainages. The geographic distribution of F. placidus is based on identifications using traditional morphological characters including the first-form male gonopod, chelae, and rostrum. Within F. placidus, color pattern variation is specific to populations separated by hydrogeographic barriers. We used DNA barcoding data (mtDNA-COI) and genome-wide molecular markers (nuclear SNPs) to examine geographic patterns of genetic variation in F. placidus within the Cumberland and Tennessee river drainages. The federally endangered Nashville crayfish, F. shoupi (Hobbs, 1948), was included in our analyses, as previous phylogenetic reconstructions suggest F. placidus is paraphyletic with respect to F. shoupi. Phylogenetic reconstructions and molecular species delimitation identified four genetically distinct lineages within F. placidus that are paraphyletic with respect to F. shoupi. Our results add to numerous studies demonstrating the utility of robust molecular analyses for understanding the biodiversity of North American crayfishes.","PeriodicalId":54850,"journal":{"name":"Journal of Crustacean Biology","volume":"1 1","pages":""},"PeriodicalIF":1.1,"publicationDate":"2023-07-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"60820030","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Beneath the surface: correlates of solitary, paired, and group living in a cryptic burrowing ghost shrimp Trypaea australiensis Dana, 1852 (Decapoda: Axiidea: Calianassidae)","authors":"Renae L Kirby, M. Wong","doi":"10.1093/jcbiol/ruad035","DOIUrl":"https://doi.org/10.1093/jcbiol/ruad035","url":null,"abstract":"\u0000 Marine organisms, particularly invertebrates, are relatively understudied regarding social structure and behaviour, especially those that are cryptic. While empirically challenging to investigate, these species can provide novel insights into the evolution of sociality given their unique ecology. Our aim was to quantify in-situ the social structure and its underlying correlates in the Australian burrowing shrimp, Trypaea australiensis Dana, 1852 (Callianassidae). We show that T. australiensis exhibits intraspecific variation in social structure, being most often found in solitary arrangements, frequently in pairs (including homosexual and heterosexual arrangements), and sometimes in groups. The majority of shrimp in pairs and groups were found in heterosexual pairings or groups of one male and multiple females. Variation in social structure was correlated with variation in body size characteristics, seasonality, and site. These findings demonstrate that a wider array of social structures are exhibited by this species than previously expected, but the obvious limitations associated with sampling a cryptic burrowing species in situ mean that further investigations under controlled conditions, including laboratory behavioural manipulations, will be needed to confirm the current findings. The use of resin casts to understand burrow morphology would be important for understanding the causes of intraspecific variation in this and other cryptic species.","PeriodicalId":54850,"journal":{"name":"Journal of Crustacean Biology","volume":" ","pages":""},"PeriodicalIF":1.1,"publicationDate":"2023-07-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43106259","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}