Soil Organisms最新文献

{"title":"Lessons from the WBF2020: extrinsic and intrinsic value of soil organisms.","authors":"Helen R P Phillips, Léa Beaumelle, Nico Eisenhauer, Jes Hines, Linnea C Smith","doi":"10.25674/so92iss2pp121","DOIUrl":"10.25674/so92iss2pp121","url":null,"abstract":"<p><p>Following our participation in the first World Biodiversity Forum in Davos, Switzerland, we provide a summary of the main themes of the conference, as well as an overview of the session that was focused on soil biodiversity. One of the main themes of the conference was the valuation of biodiversity and what contributes to the value of biodiversity. In this article we explore whether we should move away from the notion that we can only 'sell' soil biodiversity based on the function and services it provides, and rather shift towards valuing soil biodiversity based on its intrinsic value and our relationship with it.</p>","PeriodicalId":53066,"journal":{"name":"Soil Organisms","volume":"92 2","pages":"121-127"},"PeriodicalIF":0.0,"publicationDate":"2020-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7116015/pdf/EMS94133.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38339565","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Building a global database of soil microbial biomass and function: a call for collaboration.","authors":"Gabriel R Smith, Thomas W Crowther, Nico Eisenhauer, Johan van den Hoogen","doi":"10.25674/so91iss3pp140","DOIUrl":"10.25674/so91iss3pp140","url":null,"abstract":"<p><p>Global analyses are emerging as valuable complements to local and regional scale studies in ecology and are useful for examining many of the major environmental issues that we face today. Soil ecology has significantly benefited from these developments, with recent syntheses unearthing interesting, unexpected biogeographic patterns in belowground biotic communities. However, some questions still remain unanswered, and the accuracy of these studies is inevitably limited by the extent of the data they draw upon. This is a particular problem in global ecology because most datasets used exhibit geographic bias in sample distribution. Here, we work towards addressing this problem with an open call for collaboration on a planned global analysis of soil phospholipid fatty acid and potential enzyme activity measurements. We summarize the current extent of our dataset, outline the planned analyses, and provide information for prospective collaborators who would like to contribute or learn more.</p>","PeriodicalId":53066,"journal":{"name":"Soil Organisms","volume":"91 3","pages":"139-142"},"PeriodicalIF":0.0,"publicationDate":"2020-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7311196/pdf/EMS86634.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38083214","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Recommendations for establishing global collaborative networks in soil ecology.","authors":"Fernando T Maestre,&nbsp;Nico Eisenhauer","doi":"10.25674/so91iss3pp73","DOIUrl":"https://doi.org/10.25674/so91iss3pp73","url":null,"abstract":"<p><p>The complexity and transnational nature of environmental issues our societies are facing, and the need to build scientific capacity building in many regions of the world, require the establishment of global collaborative research networks that include a diverse representation of scientists from multiple geographical, cultural and socio-economical backgrounds. This topic is currently gaining relevance in the field of soil ecology, as awareness is increasing that recognizing, addressing, and predicting the changes that soils are facing requires global collaboration. However, the setup, management and operation of research networks imply multiple tasks and challenges that need to be carefully considered. While major issues related to the setup of such networks in ecology have already been described in the literature, here we focus on aspects that are important to make them truly global and inclusive. For doing so, we introduce a series of recommendations to successfully develop research networks that: i) explore ecological questions requiring data with a global coverage and ii) foster the participation of scientists who have been traditionally underrepresented in international research collaborations. These recommendations, which are based on our own experience, also provide practical advice to anyone aiming to initiate (or join) a global collaborative research network to the mutual benefit of all contributors.</p>","PeriodicalId":53066,"journal":{"name":"Soil Organisms","volume":"91 3","pages":"73-85"},"PeriodicalIF":0.0,"publicationDate":"2019-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6944499/pdf/EMS85300.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37518245","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Climate change effects on earthworms - a review.","authors":"Jaswinder Singh, Martin Schädler, Wilian Demetrio, George G Brown, Nico Eisenhauer","doi":"10.25674/so91iss3pp114","DOIUrl":"10.25674/so91iss3pp114","url":null,"abstract":"<p><p>Climate change can have a plethora of effects on organisms above and below the ground in terrestrial ecosystems. Given the tremendous biodiversity in the soil and the many ecosystem functions governed by soil organisms, the drivers of soil biodiversity have received increasing attention. Various climatic factors like temperature, precipitation, soil moisture, as well as extreme climate events like drought and flood have been shown to alter the composition and functioning of communities in the soil. Earthworms are important ecosystem engineers in the soils of temperate and tropical climates and play crucial roles for many ecosystem services, including decomposition, nutrient cycling, and crop yield. Here, we review the published literature on climate change effects on earthworm communities and activity. In general, we find highly species- and ecological group-specific responses to climate change, which are likely to result in altered earthworm community composition in future ecosystems. Earthworm activity, abundance, and biomass tend to increase with increasing temperature at sufficiently high soil water content, while climate extremes like drought and flooding have deleterious effects. Changing climate conditions may facilitate the invasion of earthworms at higher latitudes and altitudes, while dryer and warmer conditions may limit earthworm performance in other regions of the world. The present summary of available information provides a first baseline for predictions of future earthworm distribution. It also reveals the shortage of studies on interacting effects of multiple global change effects on earthworms, such as potential context-dependent effects of climate change at different soil pollution levels and across ecosystem types.</p>","PeriodicalId":53066,"journal":{"name":"Soil Organisms","volume":"91 3","pages":"114-138"},"PeriodicalIF":0.0,"publicationDate":"2019-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6944501/pdf/EMS85301.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37518246","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Soil Organisms - an international open access journal on the taxonomic and functional biodiversity in the soil.","authors":"Nico Eisenhauer,&nbsp;Willi E R Xylander","doi":"10.25674/so91200","DOIUrl":"https://doi.org/10.25674/so91200","url":null,"abstract":"Biodiversity change and the identification of the underlying drivers are in the focus of ecological research and public and political debate (IPBES 2019). Soil biodiversity has thus far rarely entered this discussion and analyses (Cameron et al. 2018), and substantial gaps in soil biodiversity and function data exist (Cameron et al. 2019). Furthermore, we know exceptionally little about temporal changes in soil biodiversity (Phillips et al. 2017), although soil biodiversity is thought to be essential for critical ecosystem functions and services (Bardgett & van der Putten 2014, Wall et al. 2015) but threatened by anthropogenic impacts (Veresoglou et al. 2015). At the same time, taxonomic expertise of soil biodiversity may be at risk, while novel molecular information still needs to be linked to species and functions (Geiger et al. 2016).","PeriodicalId":53066,"journal":{"name":"Soil Organisms","volume":"91 2","pages":"33-35"},"PeriodicalIF":0.0,"publicationDate":"2019-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6944500/pdf/EMS85280.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37518244","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Testing soil nematode extraction efficiency using different variations of the Baermann-funnel method.","authors":"Simone Cesarz, Annika Eva Schulz, Rémy Beugnon, Nico Eisenhauer","doi":"10.25674/so91201","DOIUrl":"10.25674/so91201","url":null,"abstract":"<p><p>Nematodes are increasingly used as powerful bioindicators of soil food web composition and functioning in ecological studies. Todays' ecological research aims to investigate not only local relationships but global patterns, which requires consistent methodology across locations. Thus, a common and easy extraction protocol of soil nematodes is needed. In this study, we present a detailed protocol of the Baermann-funnel method and highlight how different soil pre-treatments and equipment (soil type, soil height, sieving, and filter type) can affect extraction efficiency and community composition by using natural nematode communities. We found that highest nematode extraction efficiency was achieved using lowest soil height as indicated by the thickness of the soil sample in the extractor (1, 2, or 4 cm soil height) in combination with soil sieving (instead of no sieving), and by using milk filters (instead of paper towels). PCA at the family level revealed that different pre-treatments significantly affected nematode community composition. Increasing the height of the soil sample by adding more soil increased the proportion of larger-sized nematodes likely because those are able to overcome long distances but selected against small nematodes. Sieving is suggested to break up soil aggregates and, therefore, facilitate moving in general. Interestingly, sieving did not negatively affect larger nematodes that are supposed to have a higher probability of getting bruised during sieving but, even if not significant, tended to yield more extracted nematodes than no sieving. We therefore recommend to use small heights of sieved soil with milk filter to extract free-living soil nematodes with the Baermann-funnel method. The present study shows that variations in the extraction protocol can alter the total density and community composition of extracted nematodes and provides recommendations for an efficient and standardized approach in future studies. Having a simple, cheap, and standardized extraction protocol can facilitate the assessment of soil biodiversity in global contexts.</p>","PeriodicalId":53066,"journal":{"name":"Soil Organisms","volume":"91 2","pages":"61-72"},"PeriodicalIF":0.0,"publicationDate":"2019-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7326606/pdf/EMS86615.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38109418","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Notes on soil ciliates from Singapore, with description of Suturothrix monoarmata nov. gen., nov. spec. (Protozoa, Ciliophora).","authors":"Wilhelm Foissner","doi":"","DOIUrl":"","url":null,"abstract":"<p><p>Few data are available on soil ciliates from Asia. Thus, seven samples were collected in Singapore in February 1987 and investigated between December 1987 and May 1989, using the non-flooded Petri dish method, live observation, and silver impregnation. One hundred and three ciliate taxa, all new for the fauna of Singapore and Malaysia, were found. This applies also to Hemimastix amphikineta, a highly characteristic, euglenid flagellate with Gondwanan distribution. At least three undescribed ciliate species were discovered, viz., Ottowphrya magna, which has been published by Foissner (1993), Dileptus microstoma Vd'ačný & Foissner (2008), and Suturothrix monoarmata, which is described in the present paper. The new genus Suturothrix belongs to the order Haptorida and is unique in having a heteromorphic dorsal brush consisting of three staggered rows, thus forming a suture with the last right side ciliary row. Suturothrix monoarmata is a slender, middle-sized (~ 100 × 15 μm) ciliate easily recognisable by the single or two thick extrusomes in the centre of the minute oral bulge. The species is not restricted to Asia but has been found also in soil from the Amazon floodplain, Brazil.</p>","PeriodicalId":53066,"journal":{"name":"Soil Organisms","volume":"80 1","pages":"81-99"},"PeriodicalIF":0.0,"publicationDate":"2008-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3000601/pdf/ukmss-31269.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"29530667","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}