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Computing and Visualization in Science最新文献

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Flux-based level-set method for two-phase flows on unstructured grids 基于通量的非结构网格两相流水平集方法
Computing and Visualization in Science Pub Date : 2016-02-01 DOI: 10.1007/s00791-016-0269-z
P. Frolkovic, D. Logashenko, Christian Wehner
{"title":"Flux-based level-set method for two-phase flows on unstructured grids","authors":"P. Frolkovic, D. Logashenko, Christian Wehner","doi":"10.1007/s00791-016-0269-z","DOIUrl":"https://doi.org/10.1007/s00791-016-0269-z","url":null,"abstract":"","PeriodicalId":52439,"journal":{"name":"Computing and Visualization in Science","volume":"18 1","pages":"31-52"},"PeriodicalIF":0.0,"publicationDate":"2016-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s00791-016-0269-z","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"52164316","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Numerical simulation of contaminant transport in groundwater using software tools of $$r^3t$$r3t 利用$$r^3t$$ r3t软件对地下水中污染物运移进行数值模拟
Computing and Visualization in Science Pub Date : 2016-02-01 DOI: 10.1007/s00791-016-0268-0
P. Frolkovic, M. Lampe, G. Wittum
{"title":"Numerical simulation of contaminant transport in groundwater using software tools of $$r^3t$$r3t","authors":"P. Frolkovic, M. Lampe, G. Wittum","doi":"10.1007/s00791-016-0268-0","DOIUrl":"https://doi.org/10.1007/s00791-016-0268-0","url":null,"abstract":"","PeriodicalId":52439,"journal":{"name":"Computing and Visualization in Science","volume":"28 1","pages":"17-29"},"PeriodicalIF":0.0,"publicationDate":"2016-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s00791-016-0268-0","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"52164181","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Distribution, function and evolution characterization of microsatellite in Sargassum thunbergii (Fucales, Phaeophyta) transcriptome and their application in marker development. 马尾藻转录组中微卫星的分布、功能和进化特征及其在标记开发中的应用。
IF 4.6
Computing and Visualization in Science Pub Date : 2016-01-06 DOI: 10.1038/srep18947
Fuli Liu, Zimin Hu, Wenhui Liu, Jingjing Li, Wenjun Wang, Zhourui Liang, Feijiu Wang, Xiutao Sun
{"title":"Distribution, function and evolution characterization of microsatellite in Sargassum thunbergii (Fucales, Phaeophyta) transcriptome and their application in marker development.","authors":"Fuli Liu, Zimin Hu, Wenhui Liu, Jingjing Li, Wenjun Wang, Zhourui Liang, Feijiu Wang, Xiutao Sun","doi":"10.1038/srep18947","DOIUrl":"10.1038/srep18947","url":null,"abstract":"<p><p>Using transcriptome data to mine microsatellite and develop markers has growingly become prevalent. However, characterizing the possible function of microsatellite is relatively rare. In this study, we explored microsatellites in the transcriptome of the brown alga Sargassum thunbergii and characterized the frequencies, distribution, function and evolution, and developed primers to validate these microsatellites. Our results showed that Tri-nucleotide is the most abundant, followed by di- and mono-nucleotide. The length of microsatellite was significantly affected by the repeat motif size. The density of microsatellite in the CDS region is significantly lower than that in the UTR region. The annotation of the transcripts containing microsatellite showed that 573 transcripts have GO terms and can be categorized into 42 groups. Pathways enrichment showed that microsatellites were significantly overrepresented in the genes involved in pathways such as Ubiquitin mediated proteolysis, RNA degradation, Spliceosome, etc. Primers flanking 961 microsatellite loci were designed, and among the 30 pairs of primer selected randomly for availability test, 23 were proved to be efficient. These findings provided new insight into the function and evolution of microsatellite in transcriptome, and the identified microsatellite loci within the annotated gene will be useful for developing functional markers in S. thunbergii. </p>","PeriodicalId":52439,"journal":{"name":"Computing and Visualization in Science","volume":"19 1","pages":"18947"},"PeriodicalIF":4.6,"publicationDate":"2016-01-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1038/srep18947","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"58192498","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 29
A generalized Suzuki–Trotter type method in optimal control of coupled Schrödinger equations 耦合Schrödinger方程最优控制的广义Suzuki-Trotter方法
Computing and Visualization in Science Pub Date : 2015-12-01 DOI: 10.1007/s00791-016-0266-2
Felix Henneke, M. Liebmann
{"title":"A generalized Suzuki–Trotter type method in optimal control of coupled Schrödinger equations","authors":"Felix Henneke, M. Liebmann","doi":"10.1007/s00791-016-0266-2","DOIUrl":"https://doi.org/10.1007/s00791-016-0266-2","url":null,"abstract":"","PeriodicalId":52439,"journal":{"name":"Computing and Visualization in Science","volume":"17 1","pages":"277-293"},"PeriodicalIF":0.0,"publicationDate":"2015-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s00791-016-0266-2","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"52164001","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Mesh-free canonical tensor products for six-dimensional density matrix: computation of kinetic energy 六维密度矩阵的无网格正则张量积:动能的计算
Computing and Visualization in Science Pub Date : 2015-12-01 DOI: 10.1007/s00791-016-0263-5
Sambasiva Rao Chinnamsetty, Mike Espig, W. Hackbusch
{"title":"Mesh-free canonical tensor products for six-dimensional density matrix: computation of kinetic energy","authors":"Sambasiva Rao Chinnamsetty, Mike Espig, W. Hackbusch","doi":"10.1007/s00791-016-0263-5","DOIUrl":"https://doi.org/10.1007/s00791-016-0263-5","url":null,"abstract":"","PeriodicalId":52439,"journal":{"name":"Computing and Visualization in Science","volume":"17 1","pages":"267-275"},"PeriodicalIF":0.0,"publicationDate":"2015-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s00791-016-0263-5","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"52163649","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Adaptive large eddy simulation 自适应大涡模拟
Computing and Visualization in Science Pub Date : 2015-12-01 DOI: 10.1007/s00791-016-0265-3
A. Hauser, G. Wittum
{"title":"Adaptive large eddy simulation","authors":"A. Hauser, G. Wittum","doi":"10.1007/s00791-016-0265-3","DOIUrl":"https://doi.org/10.1007/s00791-016-0265-3","url":null,"abstract":"","PeriodicalId":52439,"journal":{"name":"Computing and Visualization in Science","volume":"17 1","pages":"295-304"},"PeriodicalIF":0.0,"publicationDate":"2015-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s00791-016-0265-3","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"52163860","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Multigrid method for nonlinear poroelasticity equations 非线性孔隙弹性方程的多重网格法
Computing and Visualization in Science Pub Date : 2015-10-01 DOI: 10.1007/S00791-016-0260-8
Peiyao Luo, C. Rodrigo, F. Gaspar, C. Oosterlee
{"title":"Multigrid method for nonlinear poroelasticity equations","authors":"Peiyao Luo, C. Rodrigo, F. Gaspar, C. Oosterlee","doi":"10.1007/S00791-016-0260-8","DOIUrl":"https://doi.org/10.1007/S00791-016-0260-8","url":null,"abstract":"","PeriodicalId":52439,"journal":{"name":"Computing and Visualization in Science","volume":"17 1","pages":"255-265"},"PeriodicalIF":0.0,"publicationDate":"2015-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/S00791-016-0260-8","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"52163403","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 14
Multigrid analysis of spatially resolved hepatitis C virus protein simulations 空间分解丙型肝炎病毒蛋白模拟的多网格分析
Computing and Visualization in Science Pub Date : 2015-10-01 DOI: 10.1007/s00791-016-0261-7
Markus M. Knodel, A. Nägel, S. Reiter, M. Rupp, A. Vogel, P. Targett-Adams, E. Herrmann, G. Wittum
{"title":"Multigrid analysis of spatially resolved hepatitis C virus protein simulations","authors":"Markus M. Knodel, A. Nägel, S. Reiter, M. Rupp, A. Vogel, P. Targett-Adams, E. Herrmann, G. Wittum","doi":"10.1007/s00791-016-0261-7","DOIUrl":"https://doi.org/10.1007/s00791-016-0261-7","url":null,"abstract":"","PeriodicalId":52439,"journal":{"name":"Computing and Visualization in Science","volume":"28 1","pages":"235-253"},"PeriodicalIF":0.0,"publicationDate":"2015-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s00791-016-0261-7","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"52163532","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Computational modeling of fluorescence loss in photobleaching 光漂白中荧光损失的计算模型
Computing and Visualization in Science Pub Date : 2015-08-01 DOI: 10.1007/s00791-015-0259-6
C. V. Hansen, H. Schroll, D. Wüstner
{"title":"Computational modeling of fluorescence loss in photobleaching","authors":"C. V. Hansen, H. Schroll, D. Wüstner","doi":"10.1007/s00791-015-0259-6","DOIUrl":"https://doi.org/10.1007/s00791-015-0259-6","url":null,"abstract":"","PeriodicalId":52439,"journal":{"name":"Computing and Visualization in Science","volume":"40 1","pages":"151-166"},"PeriodicalIF":0.0,"publicationDate":"2015-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s00791-015-0259-6","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"52163373","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Architecture for modeling and simulation of technical systems along their lifecycle 沿着技术系统生命周期进行建模和仿真的体系结构
Computing and Visualization in Science Pub Date : 2015-08-01 DOI: 10.1007/S00791-015-0256-9
T. Schenk, A. Gilg, M. Mühlbauer, R. Rosen, J. C. Wehrstedt
{"title":"Architecture for modeling and simulation of technical systems along their lifecycle","authors":"T. Schenk, A. Gilg, M. Mühlbauer, R. Rosen, J. C. Wehrstedt","doi":"10.1007/S00791-015-0256-9","DOIUrl":"https://doi.org/10.1007/S00791-015-0256-9","url":null,"abstract":"","PeriodicalId":52439,"journal":{"name":"Computing and Visualization in Science","volume":"17 1","pages":"167-183"},"PeriodicalIF":0.0,"publicationDate":"2015-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/S00791-015-0256-9","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"52163245","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 9
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