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Distinct contributions of meprins to skin regeneration after injury – Meprin α a physiological processer of pro-collagen VII Meprin对损伤后皮肤再生的独特贡献- Meprin α是前胶原VII的生理处理者
Matrix Biology Plus Pub Date : 2021-08-01 DOI: 10.1016/j.mbplus.2021.100065
Daniel Kruppa , Florian Peters , Olivier Bornert , Mareike D. Maler , Stefan F. Martin , Christoph Becker-Pauly , Alexander Nyström
{"title":"Distinct contributions of meprins to skin regeneration after injury – Meprin α a physiological processer of pro-collagen VII","authors":"Daniel Kruppa ,&nbsp;Florian Peters ,&nbsp;Olivier Bornert ,&nbsp;Mareike D. Maler ,&nbsp;Stefan F. Martin ,&nbsp;Christoph Becker-Pauly ,&nbsp;Alexander Nyström","doi":"10.1016/j.mbplus.2021.100065","DOIUrl":"10.1016/j.mbplus.2021.100065","url":null,"abstract":"<div><p>Astacin-like proteinases (ALPs) are regulators of tissue and extracellular matrix (ECM) homeostasis. They convey this property through their ability to convert ECM protein pro-forms to functional mature proteins and by regulating the bioavailability of growth factors that stimulate ECM synthesis. The most studied ALPs in this context are the BMP-1/tolloid-like proteinases. The other subclass of ALPs in vertebrates – the meprins, comprised of meprin α and meprin β – are emerging as regulators of tissue and ECM homeostasis but have so far been only limitedly investigated. Here, we functionally assessed the roles of meprins in skin wound healing using mice genetically deficient in one or both meprins. Meprin deficiency did not change the course of macroscopic wound closure. However, subtle but distinct contributions of meprins to the healing process and dermal homeostasis were observed. Loss of both meprins delayed re-epithelialization and reduced macrophage infiltration. Abnormal dermal healing and ECM regeneration was observed in meprin deficient wounds. Our analyses also revealed meprin α as one proteinase responsible for maturation of pro-collagen VII to anchoring fibril-forming-competent collagen VII <em>in vivo</em>. Collectively, our study identifies meprins as subtle players in skin wound healing.</p></div>","PeriodicalId":52317,"journal":{"name":"Matrix Biology Plus","volume":"11 ","pages":"Article 100065"},"PeriodicalIF":0.0,"publicationDate":"2021-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.mbplus.2021.100065","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39347654","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 10
Small leucine-rich proteoglycans in physiological and biomechanical function of bone 富含亮氨酸的小蛋白聚糖在骨的生理和生物力学功能中的作用
Matrix Biology Plus Pub Date : 2021-08-01 DOI: 10.1016/j.mbplus.2021.100063
Rui Hua, Jean X. Jiang
{"title":"Small leucine-rich proteoglycans in physiological and biomechanical function of bone","authors":"Rui Hua,&nbsp;Jean X. Jiang","doi":"10.1016/j.mbplus.2021.100063","DOIUrl":"10.1016/j.mbplus.2021.100063","url":null,"abstract":"<div><p>Proteoglycans (PGs) contain long unbranched glycosaminoglycan (GAG) chains attached to core proteins. In the bone extracellular matrix, PGs represent a class of non-collagenous proteins, and have high affinity to minerals and collagen. Considering the highly negatively charged character of GAGs and their interfibrillar positioning interconnecting with collagen fibrils, PGs and GAGs play pivotal roles in maintaining hydrostatic and osmotic pressure in the matrix. In this review, we will discuss the role of PGs, especially the small leucine-rich proteoglycans, in regulating the bioactivity of multiple cytokines and growth factors, and the bone turnover process. In addition, we focus on the coupling effects of PGs and GAGs in the hydration status of bone extracellular matrix, thus modulating bone biomechanical properties under physiological and pathological conditions.</p></div>","PeriodicalId":52317,"journal":{"name":"Matrix Biology Plus","volume":"11 ","pages":"Article 100063"},"PeriodicalIF":0.0,"publicationDate":"2021-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.mbplus.2021.100063","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39347652","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 8
The Yin and Yang of extracellular matrix 细胞外基质的阴阳。
Matrix Biology Plus Pub Date : 2021-08-01 DOI: 10.1016/j.mbplus.2021.100075
Maurizio Mongiat , Alexander Nyström
{"title":"The Yin and Yang of extracellular matrix","authors":"Maurizio Mongiat ,&nbsp;Alexander Nyström","doi":"10.1016/j.mbplus.2021.100075","DOIUrl":"10.1016/j.mbplus.2021.100075","url":null,"abstract":"","PeriodicalId":52317,"journal":{"name":"Matrix Biology Plus","volume":"11 ","pages":"Article 100075"},"PeriodicalIF":0.0,"publicationDate":"2021-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.mbplus.2021.100075","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39347657","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
The critical role of collagen VI in lung development and chronic lung disease 胶原VI在肺部发育和慢性肺部疾病中的关键作用
Matrix Biology Plus Pub Date : 2021-06-01 DOI: 10.1016/j.mbplus.2021.100058
Jared A. Mereness, Thomas J. Mariani
{"title":"The critical role of collagen VI in lung development and chronic lung disease","authors":"Jared A. Mereness,&nbsp;Thomas J. Mariani","doi":"10.1016/j.mbplus.2021.100058","DOIUrl":"10.1016/j.mbplus.2021.100058","url":null,"abstract":"<div><p>Type VI collagen (collagen VI) is an obligate extracellular matrix component found mainly in the basement membrane region of many mammalian tissues and organs, including skeletal muscle and throughout the respiratory system. Collagen VI is probably most recognized in medicine as the genetic cause of a spectrum of muscular dystrophies, including Ullrich Congenital Myopathy and Bethlem Myopathy. Collagen VI is thought to contribute to myopathy, at least in part, by mediating muscle fiber integrity by anchoring myoblasts to the muscle basement membrane. Interestingly, collagen VI myopathies present with restrictive respiratory insufficiency, thought to be due primarily to thoracic muscular weakening. Although it was recently recognized as one of the (if not the) most abundant collagens in the mammalian lung, there is a substantive knowledge gap concerning its role in respiratory system development and function. A few studies have suggested that collagen VI insufficiency is associated with airway epithelial cell survival and altered lung function. Our recent work suggested collagen VI may be a genomic risk factor for chronic lung disease in premature infants. Using this as motivation, we thoroughly assessed the role of collagen VI in lung development and in lung epithelial cell biology. Here, we describe the state-of-the-art for collagen VI cell and developmental biology within the respiratory system, and reveal its essential roles in normal developmental processes and airway epithelial cell phenotype and intracellular signaling.</p></div>","PeriodicalId":52317,"journal":{"name":"Matrix Biology Plus","volume":"10 ","pages":"Article 100058"},"PeriodicalIF":0.0,"publicationDate":"2021-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.mbplus.2021.100058","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39058764","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 14
A new mouse mutant with cleavage-resistant versican and isoform-specific versican mutants demonstrate that proteolysis at the Glu441-Ala442 peptide bond in the V1 isoform is essential for interdigital web regression 一种新的小鼠突变体,具有抗剪切和异构体特异性的异构体突变体,表明V1异构体中Glu441-Ala442肽键的蛋白质水解对数字间网络回归至关重要
Matrix Biology Plus Pub Date : 2021-06-01 DOI: 10.1016/j.mbplus.2021.100064
Sumeda Nandadasa , Cyril Burin des Roziers , Christopher Koch , Karin Tran-Lundmark , María T. Dours-Zimmermann , Dieter R. Zimmermann , Sophie Valleix , Suneel S. Apte
{"title":"A new mouse mutant with cleavage-resistant versican and isoform-specific versican mutants demonstrate that proteolysis at the Glu441-Ala442 peptide bond in the V1 isoform is essential for interdigital web regression","authors":"Sumeda Nandadasa ,&nbsp;Cyril Burin des Roziers ,&nbsp;Christopher Koch ,&nbsp;Karin Tran-Lundmark ,&nbsp;María T. Dours-Zimmermann ,&nbsp;Dieter R. Zimmermann ,&nbsp;Sophie Valleix ,&nbsp;Suneel S. Apte","doi":"10.1016/j.mbplus.2021.100064","DOIUrl":"10.1016/j.mbplus.2021.100064","url":null,"abstract":"<div><p>Two inherent challenges in the mechanistic interpretation of protease-deficient phenotypes are defining the specific substrate cleavages whose reduction generates the phenotypes and determining whether the phenotypes result from loss of substrate function, substrate accumulation, or loss of a function(s) embodied in the substrate fragments. Hence, recapitulation of a protease-deficient phenotype by a cleavage-resistant substrate would stringently validate the importance of a proteolytic event and clarify the underlying mechanisms. Versican is a large proteoglycan required for development of the circulatory system and proper limb development, and is cleaved by ADAMTS proteases at the Glu<sup>441</sup>-Ala<sup>442</sup> peptide bond located in its alternatively spliced GAGβ domain. Specific ADAMTS protease mutants have impaired interdigit web regression leading to soft tissue syndactyly that is associated with reduced versican proteolysis. Versikine, the N-terminal proteolytic fragment generated by this cleavage, restores interdigit apoptosis in ADAMTS mutant webs. Here, we report a new mouse transgene, <em>Vcan</em><sup>AA</sup>, with validated mutations in the GAGβ domain that specifically abolish this proteolytic event. <em>Vcan</em><sup>AA/AA</sup> mice have partially penetrant hindlimb soft tissue syndactyly. However, <em>Adamts20</em> inactivation in <em>Vcan</em><sup>AA/AA</sup> mice leads to fully penetrant, more severe syndactyly affecting all limbs, suggesting that ADAMTS20 cleavage of versican at other sites or of other substrates is an additional requirement for web regression. Indeed, immunostaining with a neoepitope antibody against a cleavage site in the versican GAGα domain demonstrated reduced staining in the absence of ADAMTS20. Significantly, mice with deletion of <em>Vcan</em> exon 8, encoding the GAGβ domain, consistently developed soft tissue syndactyly, whereas mice unable to include exon 7, encoding the GAGα domain in Vcan transcripts, consistently had fully separated digits. These findings suggest that versican is cleaved within each GAG-bearing domain during web regression, and affirms that proteolysis in the GAGβ domain, via generation of versikine, has an essential role in interdigital web regression.</p></div>","PeriodicalId":52317,"journal":{"name":"Matrix Biology Plus","volume":"10 ","pages":"Article 100064"},"PeriodicalIF":0.0,"publicationDate":"2021-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.mbplus.2021.100064","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39058765","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 12
The Nrf2 transcription factor: A multifaceted regulator of the extracellular matrix Nrf2转录因子:细胞外基质的多方面调节因子
Matrix Biology Plus Pub Date : 2021-06-01 DOI: 10.1016/j.mbplus.2021.100057
Paul Hiebert
{"title":"The Nrf2 transcription factor: A multifaceted regulator of the extracellular matrix","authors":"Paul Hiebert","doi":"10.1016/j.mbplus.2021.100057","DOIUrl":"10.1016/j.mbplus.2021.100057","url":null,"abstract":"<div><p>The transcription factor nuclear factor-erythroid 2-related factor 2 (Nrf2) is widely recognized as a master regulator of the cellular stress response by facilitating the transcription of cytoprotective genes. As such, the Nrf2 pathway is critical in guarding the cell from the harmful effects of excessive reactive oxygen species/reactive nitrogen species (ROS/RNS) and in maintaining cellular redox balance. While excessive ROS/RNS are harmful to the cell, physiological levels of ROS/RNS play important roles in regulating numerous signaling pathways important for normal cellular function, including the synthesis of extracellular matrix (ECM). Recent advances have underscored the importance of ROS/RNS, and by extension, factors that influence redox-balance such as Nrf2, in regulating ECM production and deposition. In addition to reducing the oxidative burden in the cell, the discovery that Nrf2 can also directly target genes that regulate and form the ECM has cemented it as a multifaceted player in the regulation of ECM proteins, and provides new insight into its potential usefulness as a target for treating ECM-related pathologies.</p></div>","PeriodicalId":52317,"journal":{"name":"Matrix Biology Plus","volume":"10 ","pages":"Article 100057"},"PeriodicalIF":0.0,"publicationDate":"2021-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.mbplus.2021.100057","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39058762","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 18
In-depth correlation analysis demonstrates that 4-hydroxyproline at the Yaa position of Gly-Xaa-Yaa repeats dominantly stabilizes collagen triple helix 深入相关分析表明,Gly-Xaa-Yaa重复序列Yaa位置的4-羟基脯氨酸对胶原三螺旋的稳定起主导作用
Matrix Biology Plus Pub Date : 2021-06-01 DOI: 10.1016/j.mbplus.2021.100067
Yuki Taga, Keisuke Tanaka, Shunji Hattori, Kazunori Mizuno
{"title":"In-depth correlation analysis demonstrates that 4-hydroxyproline at the Yaa position of Gly-Xaa-Yaa repeats dominantly stabilizes collagen triple helix","authors":"Yuki Taga,&nbsp;Keisuke Tanaka,&nbsp;Shunji Hattori,&nbsp;Kazunori Mizuno","doi":"10.1016/j.mbplus.2021.100067","DOIUrl":"10.1016/j.mbplus.2021.100067","url":null,"abstract":"<div><p>There is a general consensus that collagen stability is largely maintained by Pro and its major hydroxylated form, 4-hydroxyproline (4Hyp). However, positional difference in their stabilizing effect at the Xaa or Yaa position of collagenous Gly-Xaa-Yaa sequences has remained inconclusive. Here, we position-specifically evaluated the correlation of imino acid contents to denaturation temperature (T<sub>d</sub>) of collagen among various vertebrate and invertebrate species, using a recently developed LC–MS methodology. 4Hyp at the Yaa position showed the highest positive correlation with T<sub>d</sub>, followed by Pro at the Xaa position, which was even further increased by excluding invertebrates. We confirmed that Gly-Pro-4Hyp liberated after bacterial collagenase digestion was highly positively correlated with T<sub>d</sub>. Furthermore, other tripeptides with Yaa position 4Hyp also had comparable positive correlation, excepting negative correlation of Gly-Gly-4Hyp, while tripeptides with Xaa position Pro did not. These data provide evidence that 4Hyp dominantly contributes to thermal stability of collagen depending on its sequence position, especially in vertebrates.</p></div>","PeriodicalId":52317,"journal":{"name":"Matrix Biology Plus","volume":"10 ","pages":"Article 100067"},"PeriodicalIF":0.0,"publicationDate":"2021-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.mbplus.2021.100067","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39058763","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 9
Mechano-chemo signaling interactions modulate matrix production by cardiac fibroblasts 机械-化学信号相互作用调节心肌成纤维细胞的基质生成
Matrix Biology Plus Pub Date : 2021-06-01 DOI: 10.1016/j.mbplus.2020.100055
Jesse D. Rogers , Jeffrey W. Holmes , Jeffrey J. Saucerman , William J. Richardson
{"title":"Mechano-chemo signaling interactions modulate matrix production by cardiac fibroblasts","authors":"Jesse D. Rogers ,&nbsp;Jeffrey W. Holmes ,&nbsp;Jeffrey J. Saucerman ,&nbsp;William J. Richardson","doi":"10.1016/j.mbplus.2020.100055","DOIUrl":"10.1016/j.mbplus.2020.100055","url":null,"abstract":"<div><p>Extracellular matrix remodeling after myocardial infarction occurs in a dynamic environment in which local mechanical stresses and biochemical signaling species stimulate the accumulation of collagen-rich scar tissue. It is well-known that cardiac fibroblasts regulate post-infarction matrix turnover by secreting matrix proteins, proteases, and protease inhibitors in response to both biochemical stimuli and mechanical stretch, but how these stimuli act together to dictate cellular responses is still unclear. We developed a screen of cardiac fibroblast-secreted proteins in response to combinations of biochemical agonists and cyclic uniaxial stretch in order to elucidate the relationships between stretch, biochemical signaling, and cardiac matrix turnover. We found that stretch significantly synergized with biochemical agonists to inhibit the secretion of matrix metalloproteinases, with stretch either amplifying protease suppression by individual agonists or antagonizing agonist-driven upregulation of protease expression. Stretch also modulated fibroblast sensitivity towards biochemical agonists by either sensitizing cells towards agonists that suppress protease secretion or de-sensitizing cells towards agonists that upregulate protease secretion. These findings suggest that the mechanical environment can significantly alter fibrosis-related signaling in cardiac fibroblasts, suggesting caution when extrapolating in vitro data to predict effects of fibrosis-related cytokines in situations like myocardial infarction where mechanical stretch occurs.</p></div>","PeriodicalId":52317,"journal":{"name":"Matrix Biology Plus","volume":"10 ","pages":"Article 100055"},"PeriodicalIF":0.0,"publicationDate":"2021-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.mbplus.2020.100055","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39046249","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 10
Extracellular matrix remodeling associated with bleomycin-induced lung injury supports pericyte-to-myofibroblast transition 与博莱霉素诱导的肺损伤相关的细胞外基质重塑支持周细胞向肌成纤维细胞的转变
Matrix Biology Plus Pub Date : 2021-06-01 DOI: 10.1016/j.mbplus.2020.100056
Riley T. Hannan , Andrew E. Miller , Ruei-Chun Hung , Catherine Sano , Shayn M. Peirce , Thomas H. Barker
{"title":"Extracellular matrix remodeling associated with bleomycin-induced lung injury supports pericyte-to-myofibroblast transition","authors":"Riley T. Hannan ,&nbsp;Andrew E. Miller ,&nbsp;Ruei-Chun Hung ,&nbsp;Catherine Sano ,&nbsp;Shayn M. Peirce ,&nbsp;Thomas H. Barker","doi":"10.1016/j.mbplus.2020.100056","DOIUrl":"10.1016/j.mbplus.2020.100056","url":null,"abstract":"<div><p>Of the many origins of pulmonary myofibroblasts, microvascular pericytes are a known source. Prior literature has established the ability of pericytes to transition into myofibroblasts, but provide limited insight into molecular cues that drive this process during lung injury repair and fibrosis. Fibronectin and RGD-binding integrins have long been considered pro-fibrotic factors in myofibroblast biology, and here we test the hypothesis that these known myofibroblast cues coordinate pericyte-to-myofibroblast transitions. Specifically, we hypothesized that αvβ3 integrin engagement on fibronectin induces pericyte transition into myofibroblastic phenotypes in the murine bleomycin lung injury model. Myosin Heavy Chain 11 (Myh11)-CreERT2 lineage tracing in transgenic mice allows identification of cells of pericyte origin and provides a robust tool for isolating pericytes from tissues for further evaluation. We used this murine model to track and characterize pericyte behaviors during tissue repair. The majority of Myh11 lineage-positive cells are positive for the pericyte surface markers, PDGFRβ (55%) and CD146 (69%), and display typical pericyte morphology with spatial apposition to microvascular networks. After intratracheal bleomycin treatment of mice, Myh11 lineage-positive cells showed significantly increased contractile and secretory markers, as well as αv integrin expression. According to RNASeq measurements, many disease and tissue-remodeling genesets were upregulated in Myh11 lineage-positive cells in response to bleomycin-induced lung injury. <em>In vitro</em>, blocking αvβ3 binding through cycloRGDfK prevented expression of the myofibroblastic marker αSMA relative to controls. In response to RGD-containing provisional matrix proteins present in lung injury, pericytes may alter their integrin profile.</p></div>","PeriodicalId":52317,"journal":{"name":"Matrix Biology Plus","volume":"10 ","pages":"Article 100056"},"PeriodicalIF":0.0,"publicationDate":"2021-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.mbplus.2020.100056","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39046250","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 12
Extracellular matrix gene expression signatures as cell type and cell state identifiers 细胞外基质基因表达特征作为细胞类型和细胞状态标识符
Matrix Biology Plus Pub Date : 2021-06-01 DOI: 10.1016/j.mbplus.2021.100069
Fabio Sacher , Christian Feregrino , Patrick Tschopp , Collin Y. Ewald
{"title":"Extracellular matrix gene expression signatures as cell type and cell state identifiers","authors":"Fabio Sacher ,&nbsp;Christian Feregrino ,&nbsp;Patrick Tschopp ,&nbsp;Collin Y. Ewald","doi":"10.1016/j.mbplus.2021.100069","DOIUrl":"10.1016/j.mbplus.2021.100069","url":null,"abstract":"<div><p>Transcriptomic signatures based on cellular mRNA expression profiles can be used to categorize cell types and states. Yet whether different functional groups of genes perform better or worse in this process remains largely unexplored. Here we test the core matrisome – that is, all genes coding for structural proteins of the extracellular matrix – for its ability to delineate distinct cell types in embryonic single-cell RNA-sequencing (scRNA-seq) data. We show that even though expressed core matrisome genes correspond to less than 2% of an entire cellular transcriptome, their RNA expression levels suffice to recapitulate essential aspects of cell type-specific clustering. Notably, using scRNA-seq data from the embryonic limb, we demonstrate that core matrisome gene expression outperforms random gene subsets of similar sizes and can match and exceed the predictive power of transcription factors. While transcription factor signatures generally perform better in predicting cell types at early stages of chicken and mouse limb development, <em>i.e.,</em> when cells are less differentiated, the information content of the core matrisome signature increases in more differentiated cells. Moreover, using cross-species analyses, we show that these cell type-specific signatures are evolutionarily conserved. Our findings suggest that each cell type produces its own unique extracellular matrix, or matreotype, which becomes progressively more refined and cell type-specific as embryonic tissues mature.</p></div>","PeriodicalId":52317,"journal":{"name":"Matrix Biology Plus","volume":"10 ","pages":"Article 100069"},"PeriodicalIF":0.0,"publicationDate":"2021-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.mbplus.2021.100069","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39058766","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 10
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