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GAMR: A Guided Attention Model for (visual) Reasoning. (视觉)推理的引导注意力模型。
Mohit Vaishnav, Thomas Serre
{"title":"GAMR: A Guided Attention Model for (visual) Reasoning.","authors":"Mohit Vaishnav, Thomas Serre","doi":"","DOIUrl":"","url":null,"abstract":"<p><p>Humans continue to outperform modern AI systems in their ability to flexibly parse and understand complex visual scenes. Here, we present a novel module for visual reasoning, the Guided Attention Model for (visual) Reasoning (<i>GAMR</i>), which instantiates an active vision theory - positing that the brain solves complex visual reasoning problems dynamically - via sequences of attention shifts to select and route task-relevant visual information into memory. Experiments on an array of visual reasoning tasks and datasets demonstrate GAMR's ability to learn visual routines in a robust and sample-efficient manner. In addition, GAMR is shown to be capable of zero-shot generalization on completely novel reasoning tasks. Overall, our work provides computational support for cognitive theories that postulate the need for a critical interplay between attention and memory to dynamically maintain and manipulate task-relevant visual information to solve complex visual reasoning tasks.</p>","PeriodicalId":521258,"journal":{"name":"... International Conference on Learning Representations","volume":"2023 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13594982/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149027504","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Turning the Curse of Heterogeneity in Federated Learning into a Blessing for Out-of-Distribution Detection. 将联邦学习中的异质性诅咒转化为非分布检测的福音。
Shuyang Yu, Junyuan Hong, Haotao Wang, Zhangyang Wang, Jiayu Zhou
{"title":"Turning the Curse of Heterogeneity in Federated Learning into a Blessing for Out-of-Distribution Detection.","authors":"Shuyang Yu, Junyuan Hong, Haotao Wang, Zhangyang Wang, Jiayu Zhou","doi":"","DOIUrl":"","url":null,"abstract":"<p><p>Deep neural networks have witnessed huge successes in many challenging prediction tasks and yet they often suffer from out-of-distribution (OoD) samples, misclassifying them with high confidence. Recent advances show promising OoD detection performance for centralized training, and however, OoD detection in federated learning (FL) is largely overlooked, even though many security sensitive applications such as autonomous driving and voice recognition authorization are commonly trained using FL for data privacy concerns. The main challenge that prevents previous state-of-the-art OoD detection methods from being incorporated to FL is that they require large amount of real OoD samples. However, in real-world scenarios, such large-scale OoD training data can be costly or even infeasible to obtain, especially for resource-limited local devices. On the other hand, a notorious challenge in FL is data heterogeneity where each client collects non-identically and independently distributed (non-iid) data. We propose to take advantage of such heterogeneity and turn the curse into a blessing that facilitates OoD detection in FL. The key is that for each client, non-iid data from other clients (unseen external classes) can serve as an alternative to real OoD samples. Specifically, we propose a novel Federated Out-of-Distribution Synthesizer (Foster), which learns a class-conditional generator to synthesize virtual external-class OoD samples, and maintains data confidentiality and communication efficiency required by FL. Experimental results show that our method outperforms the state-of-the-art for OoD tasks by 2.49%, 2.88%, 1.42% AUROC, and 0.01%, 0.89%, 1.74% ID accuracy, on CIFAR-10, CIFAR-100, and STL10, respectively. Codes are available: https://github.com/illidanlab/FOSTER.</p>","PeriodicalId":521258,"journal":{"name":"... International Conference on Learning Representations","volume":"2023 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13526512/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148869446","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
3D UX-Net: A Large Kernel Volumetric ConvNet Modernizing Hierarchical Transformer for Medical Image Segmentation. 3D UX-Net:用于医学图像分割的大核体积卷积神经网络现代化分层变压器。
Ho Hin Lee, Shunxing Bao, Yuankai Huo, Bennett A Landman
{"title":"3D UX-Net: A Large Kernel Volumetric ConvNet Modernizing Hierarchical Transformer for Medical Image Segmentation.","authors":"Ho Hin Lee, Shunxing Bao, Yuankai Huo, Bennett A Landman","doi":"","DOIUrl":"","url":null,"abstract":"<p><p>The recent 3D medical ViTs (e.g., SwinUNETR) achieve the state-of-the-art performances on several 3D volumetric data benchmarks, including 3D medical image segmentation. Hierarchical transformers (e.g., Swin Transformers) reintroduced several ConvNet priors and further enhanced the practical viability of adapting volumetric segmentation in 3D medical datasets. The effectiveness of hybrid approaches is largely credited to the large receptive field for non-local self-attention and the large number of model parameters. We hypothesize that volumetric ConvNets can simulate the large receptive field behavior of these learning approaches with fewer model parameters using depth-wise convolution. In this work, we propose a lightweight volumetric ConvNet, termed 3D UX-Net, which adapts the hierarchical transformer using ConvNet modules for robust volumetric segmentation. Specifically, we revisit volumetric depth-wise convolutions with large kernel (LK) size (e.g. starting from 7 × 7 × 7) to enable the larger global receptive fields, inspired by Swin Transformer. We further substitute the multi-layer perceptron (MLP) in Swin Transformer blocks with pointwise depth convolutions and enhance model performances with fewer normalization and activation layers, thus reducing the number of model parameters. 3D UX-Net competes favorably with current SOTA transformers (e.g. SwinUNETR) using three challenging public datasets on volumetric brain and abdominal imaging: 1) MICCAI Challenge 2021 FLARE, 2) MICCAI Challenge 2021 FeTA, and 3) MICCAI Challenge 2022 AMOS. 3D UX-Net consistently outperforms SwinUNETR with improvement from 0.929 to 0.938 Dice (FLARE2021) and 0.867 to 0.874 Dice (Feta2021). We further evaluate the transfer learning capability of 3D UX-Net with AMOS2022 and demonstrates another improvement of 2.27% Dice (from 0.880 to 0.900). The source code with our proposed model are available at https://github.com/MASILab/3DUX-Net.</p>","PeriodicalId":521258,"journal":{"name":"... International Conference on Learning Representations","volume":"2023 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13597054/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149027512","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
GDA-AM: ON THE EFFECTIVENESS OF SOLVING MIN-IMAX OPTIMIZATION VIA ANDERSON MIXING. Gda-am:通过Anderson混合求解最小-最大优化的有效性。
Huan He, Shifan Zhao, Yuanzhe Xi, Joyce C Ho, Yousef Saad
{"title":"GDA-AM: ON THE EFFECTIVENESS OF SOLVING MIN-IMAX OPTIMIZATION VIA ANDERSON MIXING.","authors":"Huan He, Shifan Zhao, Yuanzhe Xi, Joyce C Ho, Yousef Saad","doi":"","DOIUrl":"","url":null,"abstract":"<p><p>Many modern machine learning algorithms such as generative adversarial networks (GANs) and adversarial training can be formulated as minimax optimization. Gradient descent ascent (GDA) is the most commonly used algorithm due to its simplicity. However, GDA can converge to non-optimal minimax points. We propose a new minimax optimization framework, GDA-AM, that views the GDA dynamics as a fixed-point iteration and solves it using Anderson Mixing to converge to the local minimax. It addresses the diverging issue of simultaneous GDA and accelerates the convergence of alternating GDA. We show theoretically that the algorithm can achieve global convergence for bilinear problems under mild conditions. We also empirically show that GDA-AM solves a variety of minimax problems and improves adversarial training on several datasets. Codes are available on Github .</p>","PeriodicalId":521258,"journal":{"name":"... International Conference on Learning Representations","volume":"2022 ","pages":"13527-13557"},"PeriodicalIF":0.0,"publicationDate":"2022-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13095136/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147795903","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Heteroscedastic Temporal Variational Autoencoder for Irregular Time Series. 不规则时间序列的异方差时间变分自编码器。
Satya Narayan Shukla, Benjamin M Marlin
{"title":"Heteroscedastic Temporal Variational Autoencoder for Irregular Time Series.","authors":"Satya Narayan Shukla, Benjamin M Marlin","doi":"","DOIUrl":"","url":null,"abstract":"<p><p>Irregularly sampled time series commonly occur in several domains where they present a significant challenge to standard deep learning models. In this paper, we propose a new deep learning framework for probabilistic interpolation of irregularly sampled time series that we call the <i>Heteroscedastic Temporal Variational Autoencoder</i> (HeTVAE). HeTVAE includes a novel input layer to encode information about input observation sparsity, a temporal VAE architecture to propagate uncertainty due to input sparsity, and a heteroscedastic output layer to enable variable uncertainty in output interpolations. Our results show that the proposed architecture is better able to reflect variable uncertainty through time due to sparse and irregular sampling than a range of baseline and traditional models, as well as recent deep latent variable models that use homoscedastic output layers.</p>","PeriodicalId":521258,"journal":{"name":"... International Conference on Learning Representations","volume":"2022 ","pages":"23906-23925"},"PeriodicalIF":0.0,"publicationDate":"2022-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12927591/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147286790","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Efficient Split-Mix Federated Learning for On-Demand and In-Situ Customization. 基于按需和原位定制的高效分离混合联邦学习。
Junyuan Hong, Haotao Wang, Zhangyang Wang, Jiayu Zhou
{"title":"Efficient Split-Mix Federated Learning for On-Demand and In-Situ Customization.","authors":"Junyuan Hong, Haotao Wang, Zhangyang Wang, Jiayu Zhou","doi":"","DOIUrl":"","url":null,"abstract":"<p><p>Federated learning (FL) provides a distributed learning framework for multiple participants to collaborate learning without sharing raw data. In many practical FL scenarios, participants have heterogeneous resources due to disparities in hardware and inference dynamics that require quickly loading models of different sizes and levels of robustness. The heterogeneity and dynamics together impose significant challenges to existing FL approaches and thus greatly limit FL's applicability. In this paper, we propose a novel Split-Mix FL strategy for heterogeneous participants that, once training is done, provides <i>in-situ customization</i> of model sizes and robustness. Specifically, we achieve customization by learning a set of base sub-networks of different sizes and robustness levels, which are later aggregated on-demand according to inference requirements. This split-mix strategy achieves customization with high efficiency in communication, storage, and inference. Extensive experiments demonstrate that our method provides better in-situ customization than the existing heterogeneous-architecture FL methods. Codes and pre-trained models are available: https://github.com/illidanlab/SplitMix.</p>","PeriodicalId":521258,"journal":{"name":"... International Conference on Learning Representations","volume":"2022 ","pages":"18774-18791"},"PeriodicalIF":0.0,"publicationDate":"2022-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12948476/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147329144","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Gradient Importance Learning for Incomplete Observations. 不完全观测值的梯度重要性学习。
Qitong Gao, Dong Wang, Joshua D Amason, Siyang Yuan, Chenyang Tao, Ricardo Henao, Majda Hadziahmetovic, Lawrence Carin, Miroslav Pajic
{"title":"Gradient Importance Learning for Incomplete Observations.","authors":"Qitong Gao, Dong Wang, Joshua D Amason, Siyang Yuan, Chenyang Tao, Ricardo Henao, Majda Hadziahmetovic, Lawrence Carin, Miroslav Pajic","doi":"","DOIUrl":"","url":null,"abstract":"<p><p>Though recent works have developed methods that can generate estimates (or imputations) of the missing entries in a dataset to facilitate downstream analysis, most depend on assumptions that may not align with real-world applications and could suffer from poor performance in subsequent tasks such as classification. This is particularly true if the data have large missingness rates or a small sample size. More importantly, the imputation error could be propagated into the prediction step that follows, which may constrain the capabilities of the prediction model. In this work, we introduce the gradient importance learning (GIL) method to train multilayer perceptrons (MLPs) and long short-term memories (LSTMs) to <i>directly</i> perform inference from inputs containing missing values <i>without imputation</i>. Specifically, we employ reinforcement learning (RL) to adjust the gradients used to train these models via back-propagation. This allows the model to exploit the underlying information behind <i>missingness patterns</i>. We test the approach on real-world time-series (<i>i.e.</i>, MIMIC-III), tabular data obtained from an eye clinic, and a standard dataset (<i>i.e.</i>, MNIST), where our <i>imputation-free</i> predictions outperform the traditional <i>two-step</i> imputation-based predictions using state-of-the-art imputation methods.</p>","PeriodicalId":521258,"journal":{"name":"... International Conference on Learning Representations","volume":"2022 ","pages":"23661-23687"},"PeriodicalIF":0.0,"publicationDate":"2022-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12905674/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146204734","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Ancestral protein sequence reconstruction using a tree-structured Ornstein-Uhlenbeck variational autoencoder. 使用树结构Ornstein-Uhlenbeck变分自编码器重建祖先蛋白序列。
Lys Sanz Moreta, Jotun Hein, Thomas Hamelryck, Ola Rønning, Ahmad Salim Al-Sibahi, Douglas Theobald
{"title":"Ancestral protein sequence reconstruction using a tree-structured Ornstein-Uhlenbeck variational autoencoder.","authors":"Lys Sanz Moreta, Jotun Hein, Thomas Hamelryck, Ola Rønning, Ahmad Salim Al-Sibahi, Douglas Theobald","doi":"","DOIUrl":"","url":null,"abstract":"<p><p>We introduce a deep generative model for representation learning of biological sequences that, unlike existing models, explicitly represents the evolutionary process. The model makes use of a tree-structured Ornstein-Uhlenbeck process, obtained from a given phylogenetic tree, as an informative prior for a variational autoencoder. We show the model performs well on the task of ancestral sequence reconstruction of single protein families. Our results and ablation studies indicate that the explicit representation of evolution using a suitable tree-structured prior has the potential to improve representation learning of biological sequences considerably. Finally, we briefly discuss extensions of the model to genomic-scale data sets and the case of a latent phylogenetic tree.</p>","PeriodicalId":521258,"journal":{"name":"... International Conference on Learning Representations","volume":"2022 ","pages":"9556-9577"},"PeriodicalIF":0.0,"publicationDate":"2022-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12908695/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146215522","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Explanations of Black-Box Models based on Directional Feature Interactions. 基于方向性特征交互的黑箱模型解释。
Aria Masoomi, Davin Hill, Zhonghui Xu, Craig P Hersh, Edwin K Silverman, Peter J Castaldi, Stratis Ioannidis, Jennifer Dy
{"title":"Explanations of Black-Box Models based on Directional Feature Interactions.","authors":"Aria Masoomi, Davin Hill, Zhonghui Xu, Craig P Hersh, Edwin K Silverman, Peter J Castaldi, Stratis Ioannidis, Jennifer Dy","doi":"","DOIUrl":"","url":null,"abstract":"<p><p>As machine learning algorithms are deployed ubiquitously to a variety of domains, it is imperative to make these often black-box models transparent. Several recent works explain black-box models by capturing the most influential features for prediction per instance; such explanation methods are univariate, as they characterize importance per feature. We extend univariate explanation to a higher-order; this enhances explainability, as bivariate methods can capture feature interactions in black-box models, represented as a directed graph. Analyzing this graph enables us to discover groups of features that are equally important (i.e., interchangeable), while the notion of directionality allows us to identify the most influential features. We apply our bivariate method on Shapley value explanations, and experimentally demonstrate the ability of directional explanations to discover feature interactions. We show the superiority of our method against state-of-the-art on CIFAR10, IMDB, Census, Divorce, Drug, and gene data.</p>","PeriodicalId":521258,"journal":{"name":"... International Conference on Learning Representations","volume":"2022 ","pages":"10075-10105"},"PeriodicalIF":0.0,"publicationDate":"2022-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12933520/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147314747","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Granger causal inference on DAGs identifies genomic loci regulating transcription. 对dag的格兰杰因果推理鉴定了调节转录的基因组位点。
Rohit Singh, Alexander P Wu, Bonnie Berger
{"title":"Granger causal inference on DAGs identifies genomic loci regulating transcription.","authors":"Rohit Singh, Alexander P Wu, Bonnie Berger","doi":"","DOIUrl":"","url":null,"abstract":"<p><p>When a dynamical system can be modeled as a <i>sequence</i> of observations, Granger causality is a powerful approach for detecting predictive interactions between its variables. However, traditional Granger causal inference has limited utility in domains where the dynamics need to be represented as directed acyclic graphs (DAGs) rather than as a linear sequence, such as with cell differentiation trajectories. Here, we present GrID-Net, a framework based on graph neural networks with lagged message passing for Granger causal inference on DAG-structured systems. Our motivating application is the analysis of single-cell multimodal data to identify genomic loci that mediate the regulation of specific genes. To our knowledge, GrID-Net is the first single-cell analysis tool that accounts for the temporal lag between a genomic locus becoming accessible and its downstream effect on a target gene's expression. We applied GrID-Net on multimodal single-cell assays that profile chromatin accessibility (ATAC-seq) and gene expression (RNA-seq) in the same cell and show that it dramatically outperforms existing methods for inferring regulatory locus-gene links, achieving up to 71% greater agreement with independent population genetics-based estimates. By extending Granger causality to DAG-structured dynamical systems, our work unlocks new domains for causal analyses and, more specifically, opens a path towards elucidating gene regulatory interactions relevant to cellular differentiation and complex human diseases at unprecedented scale and resolution.</p>","PeriodicalId":521258,"journal":{"name":"... International Conference on Learning Representations","volume":"2022 ","pages":"13087-13105"},"PeriodicalIF":0.0,"publicationDate":"2022-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12947574/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147329149","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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