Computerized Medical Imaging and Graphics最新文献

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Multi-task global optimization-based method for vascular landmark detection 基于多任务全局优化的血管地标检测方法
IF 5.7 2区 医学
Computerized Medical Imaging and Graphics Pub Date : 2024-03-01 DOI: 10.1016/j.compmedimag.2024.102364
Zimeng Tan , Jianjiang Feng , Wangsheng Lu , Yin Yin , Guangming Yang , Jie Zhou
{"title":"Multi-task global optimization-based method for vascular landmark detection","authors":"Zimeng Tan ,&nbsp;Jianjiang Feng ,&nbsp;Wangsheng Lu ,&nbsp;Yin Yin ,&nbsp;Guangming Yang ,&nbsp;Jie Zhou","doi":"10.1016/j.compmedimag.2024.102364","DOIUrl":"https://doi.org/10.1016/j.compmedimag.2024.102364","url":null,"abstract":"<div><p>Vascular landmark detection plays an important role in medical analysis and clinical treatment. However, due to the complex topology and similar local appearance around landmarks, the popular heatmap regression based methods always suffer from the landmark confusion problem. Vascular landmarks are connected by vascular segments and have special spatial correlations, which can be utilized for performance improvement. In this paper, we propose a multi-task global optimization-based framework for accurate and automatic vascular landmark detection. A multi-task deep learning network is exploited to accomplish landmark heatmap regression, vascular semantic segmentation, and orientation field regression simultaneously. The two auxiliary objectives are highly correlated with the heatmap regression task and help the network incorporate the structural prior knowledge. During inference, instead of performing a max-voting strategy, we propose a global optimization-based post-processing method for final landmark decision. The spatial relationships between neighboring landmarks are utilized explicitly to tackle the landmark confusion problem. We evaluated our method on a cerebral MRA dataset with 564 volumes, a cerebral CTA dataset with 510 volumes, and an aorta CTA dataset with 50 volumes. The experiments demonstrate that the proposed method is effective for vascular landmark localization and achieves state-of-the-art performance.</p></div>","PeriodicalId":50631,"journal":{"name":"Computerized Medical Imaging and Graphics","volume":"114 ","pages":"Article 102364"},"PeriodicalIF":5.7,"publicationDate":"2024-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140016089","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Detection of abdominopelvic lymph nodes in multi-parametric MRI 在多参数磁共振成像中检测腹盆腔淋巴结
IF 5.7 2区 医学
Computerized Medical Imaging and Graphics Pub Date : 2024-03-01 DOI: 10.1016/j.compmedimag.2024.102363
Tejas Sudharshan Mathai , Thomas C. Shen , Daniel C. Elton , Sungwon Lee , Zhiyong Lu , Ronald M. Summers
{"title":"Detection of abdominopelvic lymph nodes in multi-parametric MRI","authors":"Tejas Sudharshan Mathai ,&nbsp;Thomas C. Shen ,&nbsp;Daniel C. Elton ,&nbsp;Sungwon Lee ,&nbsp;Zhiyong Lu ,&nbsp;Ronald M. Summers","doi":"10.1016/j.compmedimag.2024.102363","DOIUrl":"https://doi.org/10.1016/j.compmedimag.2024.102363","url":null,"abstract":"<div><p>Reliable localization of lymph nodes (LNs) in multi-parametric MRI (mpMRI) studies plays a major role in the assessment of lymphadenopathy and staging of metastatic disease. Radiologists routinely measure the nodal size in order to distinguish benign from malignant nodes, which require subsequent cancer staging. However, identification of lymph nodes is a cumbersome task due to their myriad appearances in mpMRI studies. Multiple sequences are acquired in mpMRI studies, including T2 fat suppressed (T2FS) and diffusion weighted imaging (DWI) sequences among others; consequently, the sizing of LNs is rendered challenging due to the variety of signal intensities in these sequences. Furthermore, radiologists can miss potentially metastatic LNs during a busy clinical day. To lighten these imaging and workflow challenges, we propose a computer-aided detection (CAD) pipeline to detect both benign and malignant LNs in the body for their subsequent measurement. We employed the recently proposed Dynamic Head (DyHead) neural network to detect LNs in mpMRI studies that were acquired using a variety of scanners and exam protocols. The T2FS and DWI series were co-registered, and a selective augmentation technique called Intra-Label LISA (ILL) was used to blend the two volumes with the interpolation factor drawn from a Beta distribution. In this way, ILL diversified the samples that the model encountered during the training phase, while the requirement for both sequences to be present at test time was nullified. Our results showed a mean average precision (mAP) of 53.5% and a sensitivity of <span><math><mo>∼</mo></math></span>78% with ILL at 4 FP/vol. This corresponded to an improvement of <span><math><mo>≥</mo></math></span>10% in mAP and <span><math><mo>≥</mo></math></span>12% in sensitivity at 4FP (<em>p</em> ¡ 0.05) respectively over current LN detection approaches evaluated on the same dataset. We also established the out-of-distribution robustness of the DyHead model by training it on data acquired by a Siemens Aera scanner and testing it on data from the Siemens Verio, Siemens Biograph mMR, and Philips Achieva scanners. Our pilot work represents an important first step towards automated detection, segmentation, and classification of lymph nodes in mpMRI.</p></div>","PeriodicalId":50631,"journal":{"name":"Computerized Medical Imaging and Graphics","volume":"114 ","pages":"Article 102363"},"PeriodicalIF":5.7,"publicationDate":"2024-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140030312","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Automatic artery/vein classification methods for retinal blood vessel: A review 视网膜血管的自动动脉/静脉分类方法:综述
IF 5.7 2区 医学
Computerized Medical Imaging and Graphics Pub Date : 2024-02-16 DOI: 10.1016/j.compmedimag.2024.102355
Qihan Chen , Jianqing Peng , Shen Zhao , Wanquan Liu
{"title":"Automatic artery/vein classification methods for retinal blood vessel: A review","authors":"Qihan Chen ,&nbsp;Jianqing Peng ,&nbsp;Shen Zhao ,&nbsp;Wanquan Liu","doi":"10.1016/j.compmedimag.2024.102355","DOIUrl":"https://doi.org/10.1016/j.compmedimag.2024.102355","url":null,"abstract":"<div><p>Automatic retinal arteriovenous classification can assist ophthalmologists in disease early diagnosis. Deep learning-based methods and topological graph-based methods have become the main solutions for retinal arteriovenous classification in recent years. This paper reviews the automatic retinal arteriovenous classification methods from 2003 to 2022. Firstly, we compare different methods and provide comparison tables of the summary results. Secondly, we complete the classification of the public arteriovenous classification datasets and provide the annotation development tables of different datasets. Finally, we sort out the challenges of evaluation methods and provide a comprehensive evaluation system. Quantitative and qualitative analysis shows the changes in research hotspots over time, Quantitative and qualitative analyses reveal the evolution of research hotspots over time, highlighting the significance of exploring the integration of deep learning with topological information in future research.</p></div>","PeriodicalId":50631,"journal":{"name":"Computerized Medical Imaging and Graphics","volume":"113 ","pages":"Article 102355"},"PeriodicalIF":5.7,"publicationDate":"2024-02-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139907922","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
SCANED: Siamese collateral assessment network for evaluation of collaterals from ischemic damage SCANED:用于评估缺血性损伤侧支的暹罗侧支评估网络
IF 5.7 2区 医学
Computerized Medical Imaging and Graphics Pub Date : 2024-02-15 DOI: 10.1016/j.compmedimag.2024.102346
Mumu Aktar , Yiming Xiao , Ali K.Z. Tehrani , Donatella Tampieri , Hassan Rivaz , Marta Kersten-Oertel
{"title":"SCANED: Siamese collateral assessment network for evaluation of collaterals from ischemic damage","authors":"Mumu Aktar ,&nbsp;Yiming Xiao ,&nbsp;Ali K.Z. Tehrani ,&nbsp;Donatella Tampieri ,&nbsp;Hassan Rivaz ,&nbsp;Marta Kersten-Oertel","doi":"10.1016/j.compmedimag.2024.102346","DOIUrl":"https://doi.org/10.1016/j.compmedimag.2024.102346","url":null,"abstract":"<div><p>This study conducts collateral evaluation from ischemic damage using a deep learning-based Siamese network, addressing the challenges associated with a small and imbalanced dataset. The collateral network provides an alternative oxygen and nutrient supply pathway in ischemic stroke cases, influencing treatment decisions. Research in this area focuses on automated collateral assessment using deep learning (DL) methods to expedite decision-making processes and enhance accuracy. Our study employed a 3D ResNet-based Siamese network, referred to as SCANED, to classify collaterals as good/intermediate or poor. Utilizing non-contrast computed tomography (NCCT) images, the network automates collateral identification and assessment by analyzing tissue degeneration around the ischemic site. Relevant features from the left/right hemispheres were extracted, and Euclidean Distance (ED) was employed for similarity measurement. Finally, dichotomized classification of good/intermediate or poor collateral is performed by SCANED using an optimal threshold derived from ROC analysis. SCANED provides a sensitivity of 0.88, a specificity of 0.63, and a weighted F1 score of 0.86 in the dichotomized classification.</p></div>","PeriodicalId":50631,"journal":{"name":"Computerized Medical Imaging and Graphics","volume":"113 ","pages":"Article 102346"},"PeriodicalIF":5.7,"publicationDate":"2024-02-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0895611124000235/pdfft?md5=6b0fbf08d111cd87a2314d489eeb3849&pid=1-s2.0-S0895611124000235-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139738796","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
SC-GAN: Structure-completion generative adversarial network for synthetic CT generation from MR images with truncated anatomy SC-GAN:用于从截断解剖结构的 MR 图像生成合成 CT 的结构补全生成对抗网络
IF 5.7 2区 医学
Computerized Medical Imaging and Graphics Pub Date : 2024-02-10 DOI: 10.1016/j.compmedimag.2024.102353
Xinru Chen , Yao Zhao , Laurence E. Court , He Wang , Tinsu Pan , Jack Phan , Xin Wang , Yao Ding , Jinzhong Yang
{"title":"SC-GAN: Structure-completion generative adversarial network for synthetic CT generation from MR images with truncated anatomy","authors":"Xinru Chen ,&nbsp;Yao Zhao ,&nbsp;Laurence E. Court ,&nbsp;He Wang ,&nbsp;Tinsu Pan ,&nbsp;Jack Phan ,&nbsp;Xin Wang ,&nbsp;Yao Ding ,&nbsp;Jinzhong Yang","doi":"10.1016/j.compmedimag.2024.102353","DOIUrl":"https://doi.org/10.1016/j.compmedimag.2024.102353","url":null,"abstract":"<div><p>Creating synthetic CT (sCT) from magnetic resonance (MR) images enables MR-based treatment planning in radiation therapy. However, the MR images used for MR-guided adaptive planning are often truncated in the boundary regions due to the limited field of view and the need for sequence optimization. Consequently, the sCT generated from these truncated MR images lacks complete anatomic information, leading to dose calculation error for MR-based adaptive planning. We propose a novel structure-completion generative adversarial network (SC-GAN) to generate sCT with full anatomic details from the truncated MR images. To enable anatomy compensation, we expand input channels of the CT generator by including a body mask and introduce a truncation loss between sCT and real CT. The body mask for each patient was automatically created from the simulation CT scans and transformed to daily MR images by rigid registration as another input for our SC-GAN in addition to the MR images. The truncation loss was constructed by implementing either an auto-segmentor or an edge detector to penalize the difference in body outlines between sCT and real CT. The experimental results show that our SC-GAN achieved much improved accuracy of sCT generation in both truncated and untruncated regions compared to the original cycleGAN and conditional GAN methods.</p></div>","PeriodicalId":50631,"journal":{"name":"Computerized Medical Imaging and Graphics","volume":"113 ","pages":"Article 102353"},"PeriodicalIF":5.7,"publicationDate":"2024-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139915280","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Improving abdominal image segmentation with overcomplete shape priors 利用过度完整形状先验改进腹部图像分割
IF 5.7 2区 医学
Computerized Medical Imaging and Graphics Pub Date : 2024-02-09 DOI: 10.1016/j.compmedimag.2024.102356
Amine Sadikine , Bogdan Badic , Jean-Pierre Tasu , Vincent Noblet , Pascal Ballet , Dimitris Visvikis , Pierre-Henri Conze
{"title":"Improving abdominal image segmentation with overcomplete shape priors","authors":"Amine Sadikine ,&nbsp;Bogdan Badic ,&nbsp;Jean-Pierre Tasu ,&nbsp;Vincent Noblet ,&nbsp;Pascal Ballet ,&nbsp;Dimitris Visvikis ,&nbsp;Pierre-Henri Conze","doi":"10.1016/j.compmedimag.2024.102356","DOIUrl":"https://doi.org/10.1016/j.compmedimag.2024.102356","url":null,"abstract":"<div><p>The extraction of abdominal structures using deep learning has recently experienced a widespread interest in medical image analysis. Automatic abdominal organ and vessel segmentation is highly desirable to guide clinicians in computer-assisted diagnosis, therapy, or surgical planning. Despite a good ability to extract large organs, the capacity of U-Net inspired architectures to automatically delineate smaller structures remains a major issue, especially given the increase in receptive field size as we go deeper into the network. To deal with various abdominal structure sizes while exploiting efficient geometric constraints, we present a novel approach that integrates into deep segmentation shape priors from a semi-overcomplete convolutional auto-encoder (S-OCAE) embedding. Compared to standard convolutional auto-encoders (CAE), it exploits an over-complete branch that projects data onto higher dimensions to better characterize anatomical structures with a small spatial extent. Experiments on abdominal organs and vessel delineation performed on various publicly available datasets highlight the effectiveness of our method compared to state-of-the-art, including U-Net trained without and with shape priors from a traditional CAE. Exploiting a semi-overcomplete convolutional auto-encoder embedding as shape priors improves the ability of deep segmentation models to provide realistic and accurate abdominal structure contours.</p></div>","PeriodicalId":50631,"journal":{"name":"Computerized Medical Imaging and Graphics","volume":"113 ","pages":"Article 102356"},"PeriodicalIF":5.7,"publicationDate":"2024-02-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0895611124000338/pdfft?md5=e83e8e8de56fb1f5b580a68d5fed492b&pid=1-s2.0-S0895611124000338-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139714471","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A transformer-based pyramid network for coronary calcified plaque segmentation in intravascular optical coherence tomography images 基于变压器的金字塔网络,用于血管内光学相干断层扫描图像中冠状动脉钙化斑块的分割。
IF 5.7 2区 医学
Computerized Medical Imaging and Graphics Pub Date : 2024-02-09 DOI: 10.1016/j.compmedimag.2024.102347
Yiqing Liu , Farhad R. Nezami , Elazer R. Edelman
{"title":"A transformer-based pyramid network for coronary calcified plaque segmentation in intravascular optical coherence tomography images","authors":"Yiqing Liu ,&nbsp;Farhad R. Nezami ,&nbsp;Elazer R. Edelman","doi":"10.1016/j.compmedimag.2024.102347","DOIUrl":"10.1016/j.compmedimag.2024.102347","url":null,"abstract":"<div><p>Characterizing coronary calcified plaque (CCP) provides essential insight into diagnosis and treatment of atherosclerosis. Intravascular optical coherence tomography (OCT) offers significant advantages for detecting CCP and even automated segmentation with recent advances in deep learning techniques. Most of current methods have achieved promising results by adopting existing convolution neural networks (CNNs) in computer vision domain. However, their performance can be detrimentally affected by unseen plaque patterns and artifacts due to inherent limitation of CNNs in contextual reasoning. To overcome this obstacle, we proposed a Transformer-based pyramid network called AFS-TPNet for robust, end-to-end segmentation of CCP from OCT images. Its encoder is built upon CSWin Transformer architecture, allowing for better perceptual understanding of calcified arteries at a higher semantic level. Specifically, an augmented feature split (AFS) module and residual convolutional position encoding (RCPE) mechanism are designed to effectively enhance the capability of Transformer in capturing both fine-grained features and global contexts. Extensive experiments showed that AFS-TPNet trained using Lovasz Loss achieved superior performance in segmentation CCP under various contexts, surpassing prior state-of-the-art CNN and Transformer architectures by more than 6.58% intersection over union (IoU) score. The application of this promising method to extract CCP features is expected to enhance clinical intervention and translational research using OCT.</p></div>","PeriodicalId":50631,"journal":{"name":"Computerized Medical Imaging and Graphics","volume":"113 ","pages":"Article 102347"},"PeriodicalIF":5.7,"publicationDate":"2024-02-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139718035","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Knowledge distillation on individual vertebrae segmentation exploiting 3D U-Net 利用 3D U-Net 对单个椎骨分割进行知识提炼
IF 5.7 2区 医学
Computerized Medical Imaging and Graphics Pub Date : 2024-02-08 DOI: 10.1016/j.compmedimag.2024.102350
Luís Serrador , Francesca Pia Villani , Sara Moccia , Cristina P. Santos
{"title":"Knowledge distillation on individual vertebrae segmentation exploiting 3D U-Net","authors":"Luís Serrador ,&nbsp;Francesca Pia Villani ,&nbsp;Sara Moccia ,&nbsp;Cristina P. Santos","doi":"10.1016/j.compmedimag.2024.102350","DOIUrl":"https://doi.org/10.1016/j.compmedimag.2024.102350","url":null,"abstract":"<div><p>Recent advances in medical imaging have highlighted the critical development of algorithms for individual vertebral segmentation on computed tomography (CT) scans. Essential for diagnostic accuracy and treatment planning in orthopaedics, neurosurgery and oncology, these algorithms face challenges in clinical implementation, including integration into healthcare systems. Consequently, our focus lies in exploring the application of knowledge distillation (KD) methods to train shallower networks capable of efficiently segmenting vertebrae in CT scans. This approach aims to reduce segmentation time, enhance suitability for emergency cases, and optimize computational and memory resource efficiency. Building upon prior research in the field, a two-step segmentation approach was employed. Firstly, the spine’s location was determined by predicting a heatmap, indicating the probability of each voxel belonging to the spine. Subsequently, an iterative segmentation of vertebrae was performed from the top to the bottom of the CT volume over the located spine, using a memory instance to record the already segmented vertebrae. KD methods were implemented by training a teacher network with performance similar to that found in the literature, and this knowledge was distilled to a shallower network (student). Two KD methods were applied: (1) using the soft outputs of both networks and (2) matching logits. Two publicly available datasets, comprising 319 CT scans from 300 patients and a total of 611 cervical, 2387 thoracic, and 1507 lumbar vertebrae, were used. To ensure dataset balance and robustness, effective data augmentation methods were applied, including cleaning the memory instance to replicate the first vertebra segmentation. The teacher network achieved an average Dice similarity coefficient (DSC) of 88.22% and a Hausdorff distance (HD) of 7.71 mm, showcasing performance similar to other approaches in the literature. Through knowledge distillation from the teacher network, the student network’s performance improved, with an average DSC increasing from 75.78% to 84.70% and an HD decreasing from 15.17 mm to 8.08 mm. Compared to other methods, our teacher network exhibited up to 99.09% fewer parameters, 90.02% faster inference time, 88.46% shorter total segmentation time, and 89.36% less associated carbon (CO<sub>2</sub>) emission rate. Regarding our student network, it featured 75.00% fewer parameters than our teacher, resulting in a 36.15% reduction in inference time, a 33.33% decrease in total segmentation time, and a 42.96% reduction in CO<sub>2</sub> emissions. This study marks the first exploration of applying KD to the problem of individual vertebrae segmentation in CT, demonstrating the feasibility of achieving comparable performance to existing methods using smaller neural networks.</p></div>","PeriodicalId":50631,"journal":{"name":"Computerized Medical Imaging and Graphics","volume":"113 ","pages":"Article 102350"},"PeriodicalIF":5.7,"publicationDate":"2024-02-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0895611124000272/pdfft?md5=5527b04bad0cd774436ca9f2fd764d59&pid=1-s2.0-S0895611124000272-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139714472","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dynamic recurrent inference machines for accelerated MRI-guided radiotherapy of the liver 用于加速核磁共振成像引导的肝脏放射治疗的动态循环推理机
IF 5.7 2区 医学
Computerized Medical Imaging and Graphics Pub Date : 2024-02-08 DOI: 10.1016/j.compmedimag.2024.102348
Kai Lønning , Matthan W.A. Caan , Marlies E. Nowee , Jan-Jakob Sonke
{"title":"Dynamic recurrent inference machines for accelerated MRI-guided radiotherapy of the liver","authors":"Kai Lønning ,&nbsp;Matthan W.A. Caan ,&nbsp;Marlies E. Nowee ,&nbsp;Jan-Jakob Sonke","doi":"10.1016/j.compmedimag.2024.102348","DOIUrl":"https://doi.org/10.1016/j.compmedimag.2024.102348","url":null,"abstract":"<div><p>Recurrent inference machines (RIM), a deep learning model that learns an iterative scheme for reconstructing sparsely sampled MRI, has been shown able to perform well on accelerated 2D and 3D MRI scans, learn from small datasets and generalize well to unseen types of data. Here we propose the dynamic recurrent inference machine (DRIM) for reconstructing sparsely sampled 4D MRI by exploiting correlations between respiratory states. The DRIM was applied to a 4D protocol for MR-guided radiotherapy of liver lesions based on repetitive interleaved coronal 2D multi-slice <span><math><msub><mrow><mi>T</mi></mrow><mrow><mn>2</mn></mrow></msub></math></span>-weighted acquisitions. We demonstrate with an ablation study that the DRIM outperforms the RIM, increasing the SSIM score from about 0.89 to 0.95. The DRIM allowed for an approximately 2.7 times faster scan time than the current clinical protocol with only a slight loss in image sharpness. Correlations between slice locations can also be used, but were found to be of less importance, as were a majority of tested variations in network architecture, as long as the respiratory states are processed by the network. Through cross-validation, the DRIM is also shown to be robust in terms of training data. We further demonstrate a good performance across a large range of subsampling factors, and conclude through an evaluation by a radiation oncologist that reconstructed images of the liver contour and inner structures are of a clinically acceptable standard at acceleration factors 10x and 8x, respectively. Finally, we show that binning the data with respect to respiratory states prior to reconstruction comes at a slight cost to reconstruction quality, but at greater speed of the overall protocol.</p></div>","PeriodicalId":50631,"journal":{"name":"Computerized Medical Imaging and Graphics","volume":"113 ","pages":"Article 102348"},"PeriodicalIF":5.7,"publicationDate":"2024-02-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139748249","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
CRDet: A circle representation detector for lung granulomas based on multi-scale attention features with center point calibration CRDet:基于多尺度注意力特征和中心点校准的肺肉芽肿圆表示检测器。
IF 5.7 2区 医学
Computerized Medical Imaging and Graphics Pub Date : 2024-02-07 DOI: 10.1016/j.compmedimag.2024.102354
Yu Jin , Juan Liu , Yuanyuan Zhou , Rong Chen , Hua Chen , Wensi Duan , Yuqi Chen , Xiao-Lian Zhang
{"title":"CRDet: A circle representation detector for lung granulomas based on multi-scale attention features with center point calibration","authors":"Yu Jin ,&nbsp;Juan Liu ,&nbsp;Yuanyuan Zhou ,&nbsp;Rong Chen ,&nbsp;Hua Chen ,&nbsp;Wensi Duan ,&nbsp;Yuqi Chen ,&nbsp;Xiao-Lian Zhang","doi":"10.1016/j.compmedimag.2024.102354","DOIUrl":"10.1016/j.compmedimag.2024.102354","url":null,"abstract":"<div><p>Lung granuloma is a very common lung disease, and its specific diagnosis is important for determining the exact cause of the disease as well as the prognosis of the patient. And, an effective lung granuloma detection model based on computer-aided diagnostics (CAD) can help pathologists to localize granulomas, thereby improving the efficiency of the specific diagnosis. However, for lung granuloma detection models based on CAD, the significant size differences between granulomas and how to better utilize the morphological features of granulomas are both critical challenges to be addressed. In this paper, we propose an automatic method CRDet to localize granulomas in histopathological images and deal with these challenges. We first introduce the multi-scale feature extraction network with self-attention to extract features at different scales at the same time. Then, the features will be converted to circle representations of granulomas by circle representation detection heads to achieve the alignment of features and ground truth. In this way, we can also more effectively use the circular morphological features of granulomas. Finally, we propose a center point calibration method at the inference stage to further optimize the circle representation. For model evaluation, we built a lung granuloma circle representation dataset named LGCR, including 288 images from 50 subjects. Our method yielded 0.316 <span><math><mrow><mi>m</mi><mi>A</mi><mi>P</mi></mrow></math></span> and 0.571 <span><math><mrow><mi>m</mi><mi>A</mi><mi>R</mi></mrow></math></span>, outperforming the state-of-the-art object detection methods on our proposed LGCR.</p></div>","PeriodicalId":50631,"journal":{"name":"Computerized Medical Imaging and Graphics","volume":"113 ","pages":"Article 102354"},"PeriodicalIF":5.7,"publicationDate":"2024-02-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139717959","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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