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Pyrokinetics - A Python library to standardisegyrokinetic analysis Pyrokinetics - 用于标准化动力学分析的 Python 库
Journal of Open Source Software Pub Date : 2024-03-06 DOI: 10.21105/joss.05866
B. Patel, Peter Hill, Liam Pattinson, M. Giacomin, A. Bokshi, Daniel Kennedy, H. Dudding, J. Parisi, Tom F. Neiser, Ajay C. Jayalekshmi, David Dickinson, Juan Ruiz Ruiz
{"title":"Pyrokinetics - A Python library to standardise\u0000gyrokinetic analysis","authors":"B. Patel, Peter Hill, Liam Pattinson, M. Giacomin, A. Bokshi, Daniel Kennedy, H. Dudding, J. Parisi, Tom F. Neiser, Ajay C. Jayalekshmi, David Dickinson, Juan Ruiz Ruiz","doi":"10.21105/joss.05866","DOIUrl":"https://doi.org/10.21105/joss.05866","url":null,"abstract":"Fusion energy offers the potential for a near limitless source of low-carbon energy and is often regarded as a solution for the world’s long-term energy needs. To realise such a scenario requires the design of high-performance fusion reactors capable of maintaining the extreme conditions necessary to enable fusion. Turbulence is typically the dominant source of transport in magnetically-confined fusion plasmas, accounting for the majority of the particle and heat losses. Gyrokinetic modelling aims to quantify the level of turbulent transport encountered in fusion reactors and can be used to understand the major drivers of turbulence. The realisation of fusion critically depends on understanding how to mitigate turbulent transport, and thus requires high levels of confidence in the predictive tools being employed. Many different gyrokinetic modelling codes are available and Pyrokinetics aims to standardise the analysis of such computationally demanding simulations","PeriodicalId":503081,"journal":{"name":"Journal of Open Source Software","volume":"21 3","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-03-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140261873","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
calorine: A Python package for constructing andsampling neuroevolution potential models 卡洛琳用于构建和采样神经进化潜能模型的 Python 软件包
Journal of Open Source Software Pub Date : 2024-03-06 DOI: 10.21105/joss.06264
Eric Lindgren, Magnus Rahm, Erik Fransson, Fredrik Eriksson, Nicklas Österbacka, Zheyong Fan, Paul Erhart
{"title":"calorine: A Python package for constructing and\u0000sampling neuroevolution potential models","authors":"Eric Lindgren, Magnus Rahm, Erik Fransson, Fredrik Eriksson, Nicklas Österbacka, Zheyong Fan, Paul Erhart","doi":"10.21105/joss.06264","DOIUrl":"https://doi.org/10.21105/joss.06264","url":null,"abstract":"","PeriodicalId":503081,"journal":{"name":"Journal of Open Source Software","volume":"3 2","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-03-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140262432","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
WorldDynamics.jl: A Julia Package for Developing andSimulating Integrated Assessment Models WorldDynamics.jl：开发和模拟综合评估模型的 Julia 软件包
Journal of Open Source Software Pub Date : 2024-03-05 DOI: 10.21105/joss.05772
Pierluigi Crescenzi, Emanuele Natale, Aurora Rossi, Paulo Bruno Serafim
{"title":"WorldDynamics.jl: A Julia Package for Developing and\u0000Simulating Integrated Assessment Models","authors":"Pierluigi Crescenzi, Emanuele Natale, Aurora Rossi, Paulo Bruno Serafim","doi":"10.21105/joss.05772","DOIUrl":"https://doi.org/10.21105/joss.05772","url":null,"abstract":"","PeriodicalId":503081,"journal":{"name":"Journal of Open Source Software","volume":"55 7","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140264789","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
DAPPER: Data Assimilation with Python: a Package forExperimental Research DAPPER：Python 数据同化：实验研究软件包
Journal of Open Source Software Pub Date : 2024-02-29 DOI: 10.21105/joss.05150
P. Raanes, Yumeng Chen, C. Grudzien
{"title":"DAPPER: Data Assimilation with Python: a Package for\u0000Experimental Research","authors":"P. Raanes, Yumeng Chen, C. Grudzien","doi":"10.21105/joss.05150","DOIUrl":"https://doi.org/10.21105/joss.05150","url":null,"abstract":"","PeriodicalId":503081,"journal":{"name":"Journal of Open Source Software","volume":"47 5 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140415606","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
A Python module to combine p values arising fromdiscrete tests. 一个 Python 模块，用于合并离散检验产生的 p 值。
Journal of Open Source Software Pub Date : 2024-02-29 DOI: 10.21105/joss.06096
Gerrit Ansmann
{"title":"A Python module to combine p values arising from\u0000discrete tests.","authors":"Gerrit Ansmann","doi":"10.21105/joss.06096","DOIUrl":"https://doi.org/10.21105/joss.06096","url":null,"abstract":"","PeriodicalId":503081,"journal":{"name":"Journal of Open Source Software","volume":"3 3","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140413342","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
CoSApp: a Python library to create, simulate and designcomplex systems. CoSApp：用于创建、模拟和设计复杂系统的 Python 库。
Journal of Open Source Software Pub Date : 2024-02-29 DOI: 10.21105/joss.06292
Étienne Lac, Guy De Spiegeleer, Adrien Delsalle, Frédéric Collonval, Duc-Trung Lê, Mathias Malandain
{"title":"CoSApp: a Python library to create, simulate and design\u0000complex systems.","authors":"Étienne Lac, Guy De Spiegeleer, Adrien Delsalle, Frédéric Collonval, Duc-Trung Lê, Mathias Malandain","doi":"10.21105/joss.06292","DOIUrl":"https://doi.org/10.21105/joss.06292","url":null,"abstract":"","PeriodicalId":503081,"journal":{"name":"Journal of Open Source Software","volume":"72 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140415758","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
cppTPSA/pyTPSA: a C++/Python package for truncatedpower series algebra cppTPSA/pyTPSA：用于截断幂级数代数的 C++/Python 软件包
Journal of Open Source Software Pub Date : 2024-02-29 DOI: 10.21105/joss.04818
He Zhang
{"title":"cppTPSA/pyTPSA: a C++/Python package for truncated\u0000power series algebra","authors":"He Zhang","doi":"10.21105/joss.04818","DOIUrl":"https://doi.org/10.21105/joss.04818","url":null,"abstract":"The truncated power series algebra (TPSA), also referred to as differential algebra (DA), is a well-established and widely used method in particle accelerator physics and astronomy. The most straightforward usage of TPSA/DA is to calculate the Taylor expansion of a given function at a specific point up to order 𝑛 . In recent years, as the application of TPSA/TA has been extended to other fields, a reusable implementation of TPSA/DA as a modern C++ library or other high level programming language like Python has become desirable. The cppTPSA package implements TPSA/DA in C++11 and provides developers a convenient library with which to build advanced TPSA/DA-based methods. A Python 3 library, pyTPSA, has also been developed based on the C++ lib.","PeriodicalId":503081,"journal":{"name":"Journal of Open Source Software","volume":"30 9","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140413912","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Surjectors: surjection layers for density estimationwith normalizing flows 抛射体：用于密度估算的抛射层，带归一化流量
Journal of Open Source Software Pub Date : 2024-02-29 DOI: 10.21105/joss.06188
Simon Dirmeier
{"title":"Surjectors: surjection layers for density estimation\u0000with normalizing flows","authors":"Simon Dirmeier","doi":"10.21105/joss.06188","DOIUrl":"https://doi.org/10.21105/joss.06188","url":null,"abstract":"","PeriodicalId":503081,"journal":{"name":"Journal of Open Source Software","volume":"62 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140415235","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
LobsterPy: A package to automatically analyze LOBSTERruns LobsterPy：自动分析 LOBSTERruns 的软件包
Journal of Open Source Software Pub Date : 2024-02-27 DOI: 10.21105/joss.06286
A. Naik, Katharina Ueltzen, C. Ertural, Adam J. Jackson, Janine George
{"title":"LobsterPy: A package to automatically analyze LOBSTER\u0000runs","authors":"A. Naik, Katharina Ueltzen, C. Ertural, Adam J. Jackson, Janine George","doi":"10.21105/joss.06286","DOIUrl":"https://doi.org/10.21105/joss.06286","url":null,"abstract":"","PeriodicalId":503081,"journal":{"name":"Journal of Open Source Software","volume":"20 9","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140425996","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
DeepRank2: Mining 3D Protein Structures with GeometricDeep Learning DeepRank2：利用几何深度学习挖掘三维蛋白质结构
Journal of Open Source Software Pub Date : 2024-02-27 DOI: 10.21105/joss.05983
Giulia Crocioni, Dani L. Bodor, Coos Baakman, Farzaneh M. Parizi, Daniel T. Rademaker, Gayatri Ramakrishnan, S. A. van der Burg, Dario F. Marzella, João M. C. Teixeira, Li C. Xue
{"title":"DeepRank2: Mining 3D Protein Structures with Geometric\u0000Deep Learning","authors":"Giulia Crocioni, Dani L. Bodor, Coos Baakman, Farzaneh M. Parizi, Daniel T. Rademaker, Gayatri Ramakrishnan, S. A. van der Burg, Dario F. Marzella, João M. C. Teixeira, Li C. Xue","doi":"10.21105/joss.05983","DOIUrl":"https://doi.org/10.21105/joss.05983","url":null,"abstract":"DeepRank2, a deep","PeriodicalId":503081,"journal":{"name":"Journal of Open Source Software","volume":"13 8","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140425261","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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