Mitochondrial Dna最新文献_第3页

Phylogeography and population structure of the red stingray, Dasyatis akajei inferred by mitochondrial control region. 利用线粒体控制区推测红黄貂鱼的系统地理学和种群结构。

Mitochondrial Dna Pub Date : 2015-08-01 Epub Date: 2014-01-10 DOI: 10.3109/19401736.2013.861423

Ning Li, Xiao Chen, Dianrong Sun, Na Song, Qin Lin, Tianxiang Gao

{"title":"Phylogeography and population structure of the red stingray, Dasyatis akajei inferred by mitochondrial control region.","authors":"Ning Li, Xiao Chen, Dianrong Sun, Na Song, Qin Lin, Tianxiang Gao","doi":"10.3109/19401736.2013.861423","DOIUrl":"https://doi.org/10.3109/19401736.2013.861423","url":null,"abstract":"The red stingray Dasyatis akajei is distributed in both marine and freshwater, but little is known about its phylogeography and population structure. We sampled 107 individuals from one freshwater region and 6 coastal localities within the distribution range of D. akajei. Analyses of the first hypervariable region of mitochondrial DNA control region of 474 bp revealed only 17 polymorphism sites that defined 28 haplotypes, with no unique haplotype for the freshwater population. A high level of haplotype diversity and low nucleotide diversity were observed in both marine (h = 0.9393 ± 0.0104, π = 0.0069 ± 0.0040) and freshwater populations (h = 0.8333 ± 0.2224, π = 0.0084 ± 0.0063). Significant level of genetic structure was detected between four marine populations (TZ, WZ, ND and ZZ) via both hierarchical molecular variance analysis (AMOVA) and pairwise FST (with two exceptions), which is unusual for elasmobranchs detected previously over such short geographical distance. However, limited sampling suggested that the freshwater population was not particularly distinct (p > 0.05), but additional samples would be needed to confirm it. Demersal and slow-moving characters likely have contributed to the genetically heterogeneous population structure. The demographic history of D. akajei examined by mismatch distribution analyses, neutrality tests and Bayesian skyline analyses suggested a sudden population expansion dating to upper Pleistocene. The information on genetic diversity and genetic structure will have implications for the management of fisheries and conservation efforts.","PeriodicalId":49805,"journal":{"name":"Mitochondrial Dna","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2015-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3109/19401736.2013.861423","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"32017414","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 11

Molecular characterization of Saudi local chicken strains using mitochondrial DNA markers. 利用线粒体DNA标记对沙特地方鸡品系进行分子鉴定。

Mitochondrial Dna Pub Date : 2015-08-01 Epub Date: 2014-01-10 DOI: 10.3109/19401736.2013.863285

H A Yacoub, H A I Ramadan, Nabih A Baeshen, Mahmoud Abdel Sadek, M E Abou Alsoud

{"title":"Molecular characterization of Saudi local chicken strains using mitochondrial DNA markers.","authors":"H A Yacoub, H A I Ramadan, Nabih A Baeshen, Mahmoud Abdel Sadek, M E Abou Alsoud","doi":"10.3109/19401736.2013.863285","DOIUrl":"https://doi.org/10.3109/19401736.2013.863285","url":null,"abstract":"The current study was carried out to investigate and estimate the genetic diversity of native breeds based on cytochrome b (cyt-b) gene of mitochondrial DNA information. The obtained sequences of cyt-b gene segment have TAA as a stop codon at 488 position with no insertions or deletion in all individuals of both native chicken strains. The blast results showed that no variation was found among individuals within both native chicken strains, but when a comparison was established among them and other species of genus Gallus the variation is exploring, additionally many mutant sites were detected as single nucleotide polymorphisms (SNPs) in different sites. The phylogenetic trees exhibited three different groups. The results revealed that the native chicken strains were closely related to the cluster of Gallus gallus and subspecies of Gallus, suggesting that they may be separated from the same origin. According to this result and previously studies, the native chicken strains are genetically closer to Gallus gallus and it could be successfully distinguished from the other wild types of Gallus chicken based on cyt-b gene information. We recommended that the governmental concerns for native chicken strain should be enhanced to screen its genetic structure for large scale in the Kingdom of Saudi Arabia. ","PeriodicalId":49805,"journal":{"name":"Mitochondrial Dna","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2015-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3109/19401736.2013.863285","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"32018166","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 5

DNA barcoding revises a misidentification on musk deer. DNA条形码技术修正了对麝的误认。

Mitochondrial Dna Pub Date : 2015-08-01 Epub Date: 2014-02-03 DOI: 10.3109/19401736.2014.880887

Chengzhong Yang, Zhen Xiao, Yuan Zou, Xiuyue Zhang, Bo Yang, Yinghong Hao, Timothy Moermond, Bisong Yue

{"title":"DNA barcoding revises a misidentification on musk deer.","authors":"Chengzhong Yang, Zhen Xiao, Yuan Zou, Xiuyue Zhang, Bo Yang, Yinghong Hao, Timothy Moermond, Bisong Yue","doi":"10.3109/19401736.2014.880887","DOIUrl":"https://doi.org/10.3109/19401736.2014.880887","url":null,"abstract":"As an endangered animal group in China, musk deer (genus Moschus) have attracted the attention of deer biologists and wildlife conservationists. Clarifying the taxonomic status and distribution of musk deer species is important to determine the conservation status for each species and establish appropriate conservation strategies. There remains some uncertainty about the species determination of the musk deer in the Guandi Forest District of Shanxi Province, China. The musk deer in Shanxi would appear to represent an extension of the geographical distribution of either the Forest Musk Deer from the southwest or the Siberian Musk Deer from the northeast, or possibly both. The musk deer population in Shanxi Province provides an interesting and significant case to test the value of applying molecular methods to make a genetic species identification. In order to clarify the species status of the Shanxi musk deer, we sequenced 627 bp of the COI gene and ≈723 bp of the D-loop gene in 12 musk deer samples collected from the Guandi Forest District, and the two reference samples collected from Sichuan. Genetic analyses from the data suggest that all of the samples from the Guandi Forest District are M. berezovskii rather than M. moschiferus. It is most likely that the most previous studies had wrong species identification. And it is the first time we use DNA barcoding to prove that Shanxi is a new distribution of M. berezovskii. ","PeriodicalId":49805,"journal":{"name":"Mitochondrial Dna","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2015-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3109/19401736.2014.880887","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"32086463","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 13

Mitochondrial genome of Protobothrops xiangchengsis (Squamata: Viperidae: Crotalinae). 湘城原猿人线粒体基因组研究(鳞目:蝮蛇科:响尾蛇科)。

Mitochondrial Dna Pub Date : 2015-08-01 Epub Date: 2013-10-01 DOI: 10.3109/19401736.2013.836513

Baowei Zhang, Xin Huang, Liang Zhang, Demin Han

引用次数: 1

Rearrangement of the nad1 gene in Pristaulacus compressus (Spinola) (Hymenoptera: Evanioidea: Aulacidae) mitochondrial genome. 压缩小蜜蜂线粒体基因组nad1基因的重排(膜翅目:叶蜂总科:叶蜂科)。

Mitochondrial Dna Pub Date : 2015-08-01 Epub Date: 2013-10-01 DOI: 10.3109/19401736.2013.834436

Shu-Jun Wei, Qiu-Ling Wu, Kees van Achterberg, Xue-Xin Chen

{"title":"Rearrangement of the nad1 gene in Pristaulacus compressus (Spinola) (Hymenoptera: Evanioidea: Aulacidae) mitochondrial genome.","authors":"Shu-Jun Wei, Qiu-Ling Wu, Kees van Achterberg, Xue-Xin Chen","doi":"10.3109/19401736.2013.834436","DOIUrl":"https://doi.org/10.3109/19401736.2013.834436","url":null,"abstract":"The mitochondrial genome of the Pristaulacus compressus (Spinola, 1808) (Hymenoptera: Aulacidae) (GenBank accession No. KF500406) is reported in this study. This is the first sequenced mitochondrial genome from the family Aulacidae of the order Hymenoptera. The length of this mitochondrial genome is 15,563 bp with an A + T content of 84%, including 13 protein-coding, 2 rRNA and 22 tRNA gene, and an A + T-rich region (Table 1). Three tRNA and one protein-coding genes were rearranged in the P. compressus mitochondrial genome, in which, the trnY was inverted, while the trnQ was shuffled to the downstream of tRNA cluster trnI-trnQ-trnM. The trnS1 was translocated to the downstream of the A + T-rich region together with the protein-coding gene nad1. The gene arrangement pattern of this mitochondrial genome is new to the Hymenoptera. All protein-coding genes start with ATN start codon. Ten protein-coding genes stop with termination codon TAA, whereas one protein-coding gene uses incomplete stop codon TA and two use T. The A + T-region is located between rrnS and trnS1 with a length of 780 bp.","PeriodicalId":49805,"journal":{"name":"Mitochondrial Dna","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2015-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3109/19401736.2013.834436","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"31773565","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 14

Complete mitochondrial genome of the Chinese bitterling Rhodeus sinensis (Cypriniformes: Cyprinidae). 中国苦鱼中华Rhodeus sinensis(鲤形目:鲤科)线粒体全基因组。

Mitochondrial Dna Pub Date : 2015-08-01 Epub Date: 2013-10-03 DOI: 10.3109/19401736.2013.836517

Xuefen Yang, Zhihong Ma, Lingpeng Xie, Ruibin Yang, Jianzhong Shen

引用次数: 3

Mitochondrial genome of the Anas crecca (Anatidae: Anas). 巨蜥的线粒体基因组（巨蜥科：巨蜥）。

Mitochondrial Dna Pub Date : 2015-08-01 Epub Date: 2014-01-17 DOI: 10.3109/19401736.2013.834434

Chaochao Hu, Qing Chang, Wenliang Zhou, Liangheng Yan, Tao Pan, Chun Xue, Baowei Zhang

引用次数: 1

Two molecular markers based on mitochondrial genomes for varieties identification of the northern snakehead (Channa argus) and blotched snakehead (Channa maculata) and their reciprocal hybrids. 基于线粒体基因组的两种分子标记对北方黑鱼(Channa argus)和斑点黑鱼(Channa maculata)及其杂交品种的鉴定。

Mitochondrial Dna Pub Date : 2015-08-01 Epub Date: 2014-01-17 DOI: 10.3109/19401736.2013.873893

Zhang Xincheng, Chen Kunci, Zhu Xinping, Zhao Jian, Luo Qing, Hong Xiaoyou, Li Wei, Xiao Fengfang

{"title":"Two molecular markers based on mitochondrial genomes for varieties identification of the northern snakehead (Channa argus) and blotched snakehead (Channa maculata) and their reciprocal hybrids.","authors":"Zhang Xincheng, Chen Kunci, Zhu Xinping, Zhao Jian, Luo Qing, Hong Xiaoyou, Li Wei, Xiao Fengfang","doi":"10.3109/19401736.2013.873893","DOIUrl":"https://doi.org/10.3109/19401736.2013.873893","url":null,"abstract":"The northern snakehead (Channa argus) and blotched snakehead (Channa maculata) and their reciprocal hybrids have played important roles in the Chinese freshwater aquaculture industry, with an annual production in China exceeding 400 thousand tons. While these are popular aquaculture breeds in China, it is not easy to identify northern snakehead, blotched snakehead, and their hybrids. Thus, a method should be developed to identify these varieties. To distinguish between the reciprocal hybrids (C. argus ♀ × C. maculata ♂ and C. maculata ♀ × C. argus ♂), the mitochondrial genome sequences of northern snakehead and blotched snakehead and their reciprocal hybrids were compared. Following the alignment and analysis of mtDNA sequences of northern snakehead, blotched snakehead and their hybrids, two pairs of specific primers were designed based on identified differences ranging from 12S rRNA to 16S rRNA gene. The BY1 primers amplified the same bands in the blotched snakehead and the hybrid (C. maculata ♀ × C. argus ♂), while producing no products in northern snakehead and the hybrid (C. argus ♀ × C. maculata ♂). Amplification with WY1 yielded the opposite results. Then, 30 individuals per fish were randomized to verify the primers, and the results showed that the primers were specific for breeds, as intended. The specific primers can not only simply distinguish between two kinds of hybrids, but also rapidly identify the two parents. This study provides a method of molecular marker identification to identify reciprocal hybrids.","PeriodicalId":49805,"journal":{"name":"Mitochondrial Dna","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2015-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3109/19401736.2013.873893","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"32042030","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 3

Complete mitochondrial genome of the scalloped hammerhead Sphyrna lewini (Carcharhiniformes: Sphyrnidae). lewini双髻鲨(锤头鲨目:锤头鲨科)的线粒体全基因组。

Mitochondrial Dna Pub Date : 2015-08-01 Epub Date: 2013-09-19 DOI: 10.3109/19401736.2013.834432

Xiao Chen, Dan Xiang, Yuziwei Xu, Xiaofang Shi

引用次数: 8

The complete mitochondrial genome of the Daweizi pig. 大尾子猪线粒体全基因组。

Mitochondrial Dna Pub Date : 2015-08-01 Epub Date: 2013-10-03 DOI: 10.3109/19401736.2013.836514

Dong Xu, Chang-Qing He, Qing-Hui Li, Jun He, Hai-Ming Ma

引用次数: 9