Jorge da Cruz Moschem, Bianca Carla Silva Campitelli de Barros, Solange Maria de Toledo Serrano and Alison Felipe Alencar Chaves*,
{"title":"","authors":"Jorge da Cruz Moschem, Bianca Carla Silva Campitelli de Barros, Solange Maria de Toledo Serrano and Alison Felipe Alencar Chaves*, ","doi":"","DOIUrl":"","url":null,"abstract":"","PeriodicalId":48,"journal":{"name":"Journal of Proteome Research","volume":"24 8","pages":"XXX-XXX XXX-XXX"},"PeriodicalIF":3.6,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.5c00009","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144748384","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Tong N. Chen, Adam L. Orr, Anna G. Orr and Nathaniel M. Vacanti*,
{"title":"","authors":"Tong N. Chen, Adam L. Orr, Anna G. Orr and Nathaniel M. Vacanti*, ","doi":"","DOIUrl":"","url":null,"abstract":"","PeriodicalId":48,"journal":{"name":"Journal of Proteome Research","volume":"24 8","pages":"XXX-XXX XXX-XXX"},"PeriodicalIF":3.6,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.5c00404","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144748359","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Aliana Y. Tang*, Wilfred H. Tang and Marshall W. Bern,
{"title":"","authors":"Aliana Y. Tang*, Wilfred H. Tang and Marshall W. Bern, ","doi":"","DOIUrl":"","url":null,"abstract":"","PeriodicalId":48,"journal":{"name":"Journal of Proteome Research","volume":"24 8","pages":"XXX-XXX XXX-XXX"},"PeriodicalIF":3.6,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.5c00006","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144748367","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Samantha Lodge, Reika Masuda, Philipp Nitschke, John P. Beilby, Jennie Hui, Michael Hunter, Edward Litton, Edward Raby, Andrew Currie, Bu B. Yeap, Oscar Millet, Claire Cannet, Hartmut Schaefer, Manfred Spraul, Elaine Holmes, Julien Wist* and Jeremy K. Nicholson*,
{"title":"","authors":"Samantha Lodge, Reika Masuda, Philipp Nitschke, John P. Beilby, Jennie Hui, Michael Hunter, Edward Litton, Edward Raby, Andrew Currie, Bu B. Yeap, Oscar Millet, Claire Cannet, Hartmut Schaefer, Manfred Spraul, Elaine Holmes, Julien Wist* and Jeremy K. Nicholson*, ","doi":"","DOIUrl":"","url":null,"abstract":"","PeriodicalId":48,"journal":{"name":"Journal of Proteome Research","volume":"24 8","pages":"XXX-XXX XXX-XXX"},"PeriodicalIF":3.6,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.5c00300","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144748372","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Yuling Dai, Jeong-Ah Kim, Isabella T. Whitworth, Mark Scalf, Mabel M. Jung, Brian L. Frey, Emery H. Bresnick and Lloyd M. Smith*,
{"title":"Identifying lncRNA–Protein Interactions in Hematopoietic Progenitor Cells by Hybridization Capture and Mass Spectrometry","authors":"Yuling Dai, Jeong-Ah Kim, Isabella T. Whitworth, Mark Scalf, Mabel M. Jung, Brian L. Frey, Emery H. Bresnick and Lloyd M. Smith*, ","doi":"10.1021/acs.jproteome.5c00334","DOIUrl":"10.1021/acs.jproteome.5c00334","url":null,"abstract":"<p >Long noncoding RNAs (lncRNAs) exert regulatory functions in a wide spectrum of biological contexts, and certain regulatory functions involve the formation of RNA–protein complexes. Discovering the structure and function of these complexes may unveil important functional insights. The <i>DDX41</i> gene encoding the DEAD-box RNA helicase 41 protein (DDX41) is subject to extensive germline genetic variation, and certain variants create a predisposition to develop myelodysplastic syndrome and acute myeloid leukemia. While the importance of <i>DDX41</i> for the control of hematopoiesis is established, many questions remain regarding the mechanisms of how <i>DDX41</i> functions in hematopoietic stem and progenitor cells. Previously, we identified a DDX41-regulated lncRNA, growth-arrest-specific 5 (<i>Gas5</i>). As the <i>Gas5</i> function in hematopoiesis is unknown, we analyzed the protein interactors of <i>Gas5</i> lncRNA using HyPR-MS (hybridization purification of RNA–protein complexes, followed by mass spectrometry). A total of 303 proteins were identified as <i>Gas5</i> lncRNA interactors, five of which were experimentally validated as <i>Gas5</i> lncRNA interactors by RNA immunoprecipitation qPCR (RIP-qPCR) analysis. The identification of protein interactors with a DDX41-regulated lncRNA establishes a foundation on which to guide future mechanistic and biological studies.</p>","PeriodicalId":48,"journal":{"name":"Journal of Proteome Research","volume":"24 9","pages":"4586–4596"},"PeriodicalIF":3.6,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144758723","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Huaying Fang, Mei-Chiung Shih, Lihua Jiang, Felipe da Veiga Leprevost, Ruiqi Jian, Alexey I. Nesvizhskii, Michael P. Snyder* and Hua Tang*,
{"title":"","authors":"Huaying Fang, Mei-Chiung Shih, Lihua Jiang, Felipe da Veiga Leprevost, Ruiqi Jian, Alexey I. Nesvizhskii, Michael P. Snyder* and Hua Tang*, ","doi":"","DOIUrl":"","url":null,"abstract":"","PeriodicalId":48,"journal":{"name":"Journal of Proteome Research","volume":"24 8","pages":"XXX-XXX XXX-XXX"},"PeriodicalIF":3.6,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.4c01108","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144748362","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Thomas M. Zheng, Yann Ilboudo, Tianyuan Lu, Guillaume Butler-Laporte, Tomoko Nakanishi, David Morrison, Darin Adra, Lena Cuddeback and J. Brent Richards*,
{"title":"","authors":"Thomas M. Zheng, Yann Ilboudo, Tianyuan Lu, Guillaume Butler-Laporte, Tomoko Nakanishi, David Morrison, Darin Adra, Lena Cuddeback and J. Brent Richards*, ","doi":"","DOIUrl":"","url":null,"abstract":"","PeriodicalId":48,"journal":{"name":"Journal of Proteome Research","volume":"24 8","pages":"XXX-XXX XXX-XXX"},"PeriodicalIF":3.6,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.4c00956","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144748363","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Qinghua Xing, Xinyi Tao, Shanshan Zhang, Noha M. Mesbah, Xinwei Mao, Xiaomeng Guo, Qingping Hu, Haisheng Wang and Baisuo Zhao*,
{"title":"","authors":"Qinghua Xing, Xinyi Tao, Shanshan Zhang, Noha M. Mesbah, Xinwei Mao, Xiaomeng Guo, Qingping Hu, Haisheng Wang and Baisuo Zhao*, ","doi":"","DOIUrl":"","url":null,"abstract":"","PeriodicalId":48,"journal":{"name":"Journal of Proteome Research","volume":"24 8","pages":"XXX-XXX XXX-XXX"},"PeriodicalIF":3.6,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.5c00395","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144748365","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Leonard A. Daly*, Christopher J. Clarke, Sally O. Oswald, Andris Jankevics, Philip J. Brownridge, Richard A. Scheltema and Claire E. Eyers*,
{"title":"","authors":"Leonard A. Daly*, Christopher J. Clarke, Sally O. Oswald, Andris Jankevics, Philip J. Brownridge, Richard A. Scheltema and Claire E. Eyers*, ","doi":"","DOIUrl":"","url":null,"abstract":"","PeriodicalId":48,"journal":{"name":"Journal of Proteome Research","volume":"24 8","pages":"XXX-XXX XXX-XXX"},"PeriodicalIF":3.6,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.5c00220","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144748377","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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