Pedro Bonilla-Villalba, S. Claus, A. Kundu, P. Kerfriden
{"title":"GOAL-ORIENTED MODEL ADAPTIVITY IN STOCHASTIC ELASTODYNAMICS: SIMULTANEOUS CONTROL OF DISCRETIZATION, SURROGATE MODEL AND SAMPLING ERRORS","authors":"Pedro Bonilla-Villalba, S. Claus, A. Kundu, P. Kerfriden","doi":"10.1615/int.j.uncertaintyquantification.2020031735","DOIUrl":"https://doi.org/10.1615/int.j.uncertaintyquantification.2020031735","url":null,"abstract":"The presented adaptive modelling approach aims to jointly control the level of renement for each of the building-blocks employed in a typical chain of nite element approximations for stochastically parametrized systems, namely: (i) nite error approximation of the spatial elds (ii) surrogate modelling to interpolate quantities of interest(s) in the parameter domain and (iii) Monte-Carlo sampling of associated probability distribution(s). The control strategy seeks accurate calculation of any statistical measure of the distributions at minimum cost, given an acceptable margin of error as only tunable parameter. At each stage of the greedy-based algorithm for spatial discretisation, the mesh is selectively rened in the subdomains with highest contribution to the error in the desired measure. The strictly incremental complexity of the surrogate model is controlled by enforcing preponderant discretisation error integrated across the parameter domain. Finally, the number of Monte-Carlo samples is chosen such that either (a) the overall precision of the chain of approximations can be ascertained with sucient condence, or (b) the fact that the computational model requires further mesh renement is statistically established. The eciency of the proposed approach is discussed for a frequency-domain vibration structural dynamics problem with forward uncertainty propagation. Results show that locally adapted nite element solutions converge faster than those obtained using uniformly rened grids.","PeriodicalId":48814,"journal":{"name":"International Journal for Uncertainty Quantification","volume":null,"pages":null},"PeriodicalIF":1.7,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"67530638","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"UNCERTAINTY QUANTIFICATION OF DETONATION THROUGH ADAPTED POLYNOMIAL CHAOS","authors":"Xiao Liang, Ruili Wang, R. Ghanem","doi":"10.1615/int.j.uncertaintyquantification.2020030630","DOIUrl":"https://doi.org/10.1615/int.j.uncertaintyquantification.2020030630","url":null,"abstract":"","PeriodicalId":48814,"journal":{"name":"International Journal for Uncertainty Quantification","volume":null,"pages":null},"PeriodicalIF":1.7,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"67530334","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"SENSITIVITY ANALYSIS FOR STOCHASTIC SIMULATORS USING DIFFERENTIAL ENTROPY","authors":"S. Azzi, B. Sudret, J. Wiart","doi":"10.1615/int.j.uncertaintyquantification.2020031610","DOIUrl":"https://doi.org/10.1615/int.j.uncertaintyquantification.2020031610","url":null,"abstract":"","PeriodicalId":48814,"journal":{"name":"International Journal for Uncertainty Quantification","volume":null,"pages":null},"PeriodicalIF":1.7,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"67530356","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
L. Jofre, Manolis Papadakis, P. Roy, A. Aiken, G. Iaccarino
{"title":"MULTIFIDELITY MODELING OF IRRADIATED PARTICLE-LADEN TURBULENCE SUBJECT TO UNCERTAINTY","authors":"L. Jofre, Manolis Papadakis, P. Roy, A. Aiken, G. Iaccarino","doi":"10.1615/int.j.uncertaintyquantification.2020032236","DOIUrl":"https://doi.org/10.1615/int.j.uncertaintyquantification.2020032236","url":null,"abstract":"","PeriodicalId":48814,"journal":{"name":"International Journal for Uncertainty Quantification","volume":null,"pages":null},"PeriodicalIF":1.7,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"67530695","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"MULTILEVEL MONTE CARLO SAMPLING ON HETEROGENEOUS COMPUTER ARCHITECTURES","authors":"C. Adcock, Y. Ye, L. Jofre, G. Iaccarino","doi":"10.1615/int.j.uncertaintyquantification.2020033179","DOIUrl":"https://doi.org/10.1615/int.j.uncertaintyquantification.2020033179","url":null,"abstract":"","PeriodicalId":48814,"journal":{"name":"International Journal for Uncertainty Quantification","volume":null,"pages":null},"PeriodicalIF":1.7,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"67530726","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"DATA-DRIVEN CALIBRATION OF P3D HYDRAULIC FRACTURING MODELS","authors":"S. Zio, F. Rochinha","doi":"10.1615/int.j.uncertaintyquantification.2020033602","DOIUrl":"https://doi.org/10.1615/int.j.uncertaintyquantification.2020033602","url":null,"abstract":"","PeriodicalId":48814,"journal":{"name":"International Journal for Uncertainty Quantification","volume":null,"pages":null},"PeriodicalIF":1.7,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"67530919","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"ON THE MULTILEVEL MONTE CARLO ESTIMATION OF UNBIASED EXPECTATION VIA SEQUENCE EXTRAPOLATION","authors":"T. Barth","doi":"10.1615/int.j.uncertaintyquantification.2020032985","DOIUrl":"https://doi.org/10.1615/int.j.uncertaintyquantification.2020032985","url":null,"abstract":"","PeriodicalId":48814,"journal":{"name":"International Journal for Uncertainty Quantification","volume":null,"pages":null},"PeriodicalIF":1.7,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"67530708","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"DATA-CONSISTENT SOLUTIONS TO STOCHASTIC INVERSE PROBLEMS USING A PROBABILISTIC MULTI-FIDELITY METHOD BASED ON CONDITIONAL DENSITIES","authors":"L. Bruder, M. W. Gee, T. Wildey","doi":"10.1615/INT.J.UNCERTAINTYQUANTIFICATION.2020030092","DOIUrl":"https://doi.org/10.1615/INT.J.UNCERTAINTYQUANTIFICATION.2020030092","url":null,"abstract":"","PeriodicalId":48814,"journal":{"name":"International Journal for Uncertainty Quantification","volume":null,"pages":null},"PeriodicalIF":1.7,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"67530234","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"MODEL CALIBRATION FOR DETONATION PRODUCTS: A PHYSICS-INFORMED, TIME-DEPENDENT SURROGATE METHOD BASED ON MACHINE LEARNING","authors":"Juan Zhang, J. Yin, Ruili Wang, J. Chen","doi":"10.1615/int.j.uncertaintyquantification.2020032977","DOIUrl":"https://doi.org/10.1615/int.j.uncertaintyquantification.2020032977","url":null,"abstract":"","PeriodicalId":48814,"journal":{"name":"International Journal for Uncertainty Quantification","volume":null,"pages":null},"PeriodicalIF":1.7,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"67530543","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"BAYESIAN INFERENCE OF STOCHASTIC REACTION NETWORKS USING MULTIFIDELITY SEQUENTIAL TEMPERED MARKOV CHAIN MONTE CARLO.","authors":"Thomas A Catanach, Huy D Vo, Brian Munsky","doi":"10.1615/int.j.uncertaintyquantification.2020033241","DOIUrl":"https://doi.org/10.1615/int.j.uncertaintyquantification.2020033241","url":null,"abstract":"<p><p>Stochastic reaction network models are often used to explain and predict the dynamics of gene regulation in single cells. These models usually involve several parameters, such as the kinetic rates of chemical reactions, that are not directly measurable and must be inferred from experimental data. Bayesian inference provides a rigorous probabilistic framework for identifying these parameters by finding a posterior parameter distribution that captures their uncertainty. Traditional computational methods for solving inference problems such as Markov Chain Monte Carlo methods based on classical Metropolis-Hastings algorithm involve numerous serial evaluations of the likelihood function, which in turn requires expensive forward solutions of the chemical master equation (CME). We propose an alternate approach based on a multifidelity extension of the Sequential Tempered Markov Chain Monte Carlo (ST-MCMC) sampler. This algorithm is built upon Sequential Monte Carlo and solves the Bayesian inference problem by decomposing it into a sequence of efficiently solved subproblems that gradually increase both model fidelity and the influence of the observed data. We reformulate the finite state projection (FSP) algorithm, a well-known method for solving the CME, to produce a hierarchy of surrogate master equations to be used in this multifidelity scheme. To determine the appropriate fidelity, we introduce a novel information-theoretic criteria that seeks to extract the most information about the ultimate Bayesian posterior from each model in the hierarchy without inducing significant bias. This novel sampling scheme is tested with high performance computing resources using biologically relevant problems.</p>","PeriodicalId":48814,"journal":{"name":"International Journal for Uncertainty Quantification","volume":null,"pages":null},"PeriodicalIF":1.7,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8127724/pdf/nihms-1610699.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38926186","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}