Physical Review aPub Date : 2023-12-02Epub Date: 2021-11-25DOI: 10.1080/03610918.2021.2004420
H Jackson, S Bowen, T Jaki
{"title":"Using biomarkers to allocate patients in a response-adaptive clinical trial.","authors":"H Jackson, S Bowen, T Jaki","doi":"10.1080/03610918.2021.2004420","DOIUrl":"10.1080/03610918.2021.2004420","url":null,"abstract":"<p><p>In this paper, we discuss a response adaptive randomization method, and why it should be used in clinical trials for rare diseases compared to a randomized controlled trial with equal fixed randomization. The developed method uses a patient's biomarkers to alter the allocation probability to each treatment, in order to emphasize the benefit to the trial population. The method starts with an initial burn-in period of a small number of patients, who with equal probability, are allocated to each treatment. We then use a regression method to predict the best outcome of the next patient, using their biomarkers and the information from the previous patients. This estimated best treatment is assigned to the next patient with high probability. A completed clinical trial for the effect of catumaxomab on the survival of cancer patients is used as an example to demonstrate the use of the method and the differences to a controlled trial with equal allocation. Different regression procedures are investigated and compared to a randomized controlled trial, using efficacy and ethical measures.</p>","PeriodicalId":48702,"journal":{"name":"Physical Review a","volume":"6 1","pages":"5946-5965"},"PeriodicalIF":2.6,"publicationDate":"2023-12-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7615340/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"83714117","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Physical Review aPub Date : 2023-12-01Epub Date: 2023-08-08DOI: 10.1007/s40674-023-00211-1
Alexander Ghincea, Samuel Woo, Sheeline Yu, Taylor Pivarnik, Vitoria Fiorini, Erica L Herzog, Changwan Ryu
{"title":"Mitochondrial DNA Sensing Pathogen Recognition Receptors in Systemic Sclerosis Associated Interstitial Lung Disease: A Review.","authors":"Alexander Ghincea, Samuel Woo, Sheeline Yu, Taylor Pivarnik, Vitoria Fiorini, Erica L Herzog, Changwan Ryu","doi":"10.1007/s40674-023-00211-1","DOIUrl":"10.1007/s40674-023-00211-1","url":null,"abstract":"<p><strong>Purpose of the review: </strong>Systemic sclerosis (SSc) is a condition of dermal and visceral scar formation characterized by immune dysregulation and inflammatory fibrosis. Approximately 90% of SSc patients develop interstitial lung disease (ILD), and it is the leading cause of morbidity and mortality. Further understanding of immune-mediated fibroproliferative mechanisms has the potential to catalyze novel treatment approaches in this difficult to treat disease.</p><p><strong>Recent findings: </strong>Recent advances have demonstrated the critical role of aberrant innate immune activation mediated by mitochondrial DNA (mtDNA) through interactions with toll-like receptor 9 (TLR9) and cytosolic cyclic guanosine monophosphate-adenosine monophosphate synthase (cGAS).</p><p><strong>Summary: </strong>In this review, we will discuss how the nature of the mtDNA, whether oxidized or mutated, and its mechanism of release, either intracellularly or extracellularly, can amplify fibrogenesis by activating TLR9 and cGAS, and the novel insights gained by interrogating these signaling pathways. Because the scope of this review is intended to generate hypotheses for future research, we conclude our discussion with several important unanswered questions.</p>","PeriodicalId":48702,"journal":{"name":"Physical Review a","volume":"70 1","pages":"204-220"},"PeriodicalIF":0.0,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10791121/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"84228806","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Physical Review aPub Date : 2023-12-01Epub Date: 2023-08-02DOI: 10.1159/000533308
Matthew Gillam, Glenn Ace Fenech, Oliver Chadwick, Jonathan Nairn, Vikas Chadha, Julie Connolly, Oliver Cram, Wilma Kincaid, Paul Cauchi
{"title":"When Is the Optimum Radiological Response to Proton Beam Therapy in Uveal Melanoma?","authors":"Matthew Gillam, Glenn Ace Fenech, Oliver Chadwick, Jonathan Nairn, Vikas Chadha, Julie Connolly, Oliver Cram, Wilma Kincaid, Paul Cauchi","doi":"10.1159/000533308","DOIUrl":"10.1159/000533308","url":null,"abstract":"<p><strong>Introduction: </strong>Proton beam therapy (PBT) is an effective treatment option for uveal melanomas. Following treatment, it may take many months for the tumour to respond and it may initially enlarge. We reviewed our PBT patients to determine when they showed a radiological response to treatment.</p><p><strong>Methods: </strong>Patients undergoing PBT for ciliary body or choroidal melanomas between 2008 and 2018 were included. Data were collected on patient demographics, treatments before and after PBT and survival. All ultrasound investigations prior and since PBT were reviewed and tumour volume calculated using a validated formula for a half-ellipsoid shape.</p><p><strong>Results: </strong>193 patients were analysed, 169 with choroidal and 24 with ciliary body melanomas. 31.6% patients had other treatment prior to PBT. At a mean of 8 months post-PBT, 64.7% of patients had a reduced tumour volume with 20.2% having larger tumours. At a mean of 15 months post-treatment, these figures were 67.8% and 10.3%. 18.1% of patients had an enucleation during the study period. The earliest responses were seen at 2 months, the latest at 32 months post-treatment. 5-year melanoma-specific survival was 82.3%.</p><p><strong>Conclusions: </strong>In our study, by 6 months post-PBT, a majority of patients show a reduction in tumour volume. Of those that do not, many respond in the next 6 months and a response may be seen up to 32 months after treatment. Patients may need to be monitored for up to 32 months to see a final response to PBT treatment.</p>","PeriodicalId":48702,"journal":{"name":"Physical Review a","volume":"67 1","pages":"130-137"},"PeriodicalIF":2.6,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10712970/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"84057557","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Physical Review aPub Date : 2023-09-08DOI: 10.1103/physreva.108.032807
A. Bondy, G. W. F. Drake
{"title":"Algebraic relations from finite-nuclear-mass effects to test atomic transition rates","authors":"A. Bondy, G. W. F. Drake","doi":"10.1103/physreva.108.032807","DOIUrl":"https://doi.org/10.1103/physreva.108.032807","url":null,"abstract":"","PeriodicalId":48702,"journal":{"name":"Physical Review a","volume":" ","pages":""},"PeriodicalIF":2.9,"publicationDate":"2023-09-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49080137","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Physical Review aPub Date : 2023-09-08DOI: 10.1103/physreva.108.032808
H. Ambalampitiya, J. Stallbaumer, I. Fabrikant, I. Kalinkin, D. Fursa, A. S. Kadyrov, I. Bray
{"title":"Near-threshold collisional dynamics in the e−e+p system","authors":"H. Ambalampitiya, J. Stallbaumer, I. Fabrikant, I. Kalinkin, D. Fursa, A. S. Kadyrov, I. Bray","doi":"10.1103/physreva.108.032808","DOIUrl":"https://doi.org/10.1103/physreva.108.032808","url":null,"abstract":"","PeriodicalId":48702,"journal":{"name":"Physical Review a","volume":" ","pages":""},"PeriodicalIF":2.9,"publicationDate":"2023-09-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48577892","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Physical Review aPub Date : 2023-09-07DOI: 10.1103/physreva.108.033104
R. Bello, R. Lucchese, C. W. McCurdy
{"title":"Pump and ionizing-probe dynamics in a simultaneous treatment of electronic and nuclear motion in LiH","authors":"R. Bello, R. Lucchese, C. W. McCurdy","doi":"10.1103/physreva.108.033104","DOIUrl":"https://doi.org/10.1103/physreva.108.033104","url":null,"abstract":"","PeriodicalId":48702,"journal":{"name":"Physical Review a","volume":" ","pages":""},"PeriodicalIF":2.9,"publicationDate":"2023-09-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49617334","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Physical Review aPub Date : 2023-09-06DOI: 10.1103/physreva.108.033305
E. Guan, Gang Wang, Xi-Wen Guan, Xiaoming Cai
{"title":"Reentrant localization and mobility edges in a spinful Aubry-André-Harper model with a non-Abelian potential","authors":"E. Guan, Gang Wang, Xi-Wen Guan, Xiaoming Cai","doi":"10.1103/physreva.108.033305","DOIUrl":"https://doi.org/10.1103/physreva.108.033305","url":null,"abstract":"","PeriodicalId":48702,"journal":{"name":"Physical Review a","volume":" ","pages":""},"PeriodicalIF":2.9,"publicationDate":"2023-09-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49386701","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}