{"title":"Graph Representations of Monotonic Boolean Model Pools","authors":"R. Schwieger, H. Siebert","doi":"10.1007/978-3-319-67471-1_14","DOIUrl":"https://doi.org/10.1007/978-3-319-67471-1_14","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"37 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2017-09-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124029096","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"A Scheme for Adaptive Selection of Population Sizes in Approximate Bayesian Computation - Sequential Monte Carlo","authors":"Emmanuel Klinger, J. Hasenauer","doi":"10.1007/978-3-319-67471-1_8","DOIUrl":"https://doi.org/10.1007/978-3-319-67471-1_8","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"31 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2017-09-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128774772","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
J. Barnat, Nikola Benes, L. Brim, M. Demko, Matej Hajnal, Samuel Pastva, David Šafránek
{"title":"Detecting Attractors in Biological Models with Uncertain Parameters","authors":"J. Barnat, Nikola Benes, L. Brim, M. Demko, Matej Hajnal, Samuel Pastva, David Šafránek","doi":"10.1007/978-3-319-67471-1_3","DOIUrl":"https://doi.org/10.1007/978-3-319-67471-1_3","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"34 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2017-09-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129466579","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Data-Driven Robust Control for Type 1 Diabetes Under Meal and Exercise Uncertainties","authors":"Nicola Paoletti, Kin Sum Liu, S. Smolka, Shan Lin","doi":"10.1007/978-3-319-67471-1_13","DOIUrl":"https://doi.org/10.1007/978-3-319-67471-1_13","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"106 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2017-07-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116857228","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"A Stochastic Model for the Formation of Spatial Methylation Patterns","authors":"Alexander Lück, Pascal Giehr, J. Walter, V. Wolf","doi":"10.1007/978-3-319-67471-1_10","DOIUrl":"https://doi.org/10.1007/978-3-319-67471-1_10","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"739 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2017-06-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"122006664","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Kai-Wen Liang, Qinsi Wang, C. Telmer, D. Ravichandran, P. Spirtes, Nataša Miškov-Živanov
{"title":"Methods to Expand Cell Signaling Models Using Automated Reading and Model Checking","authors":"Kai-Wen Liang, Qinsi Wang, C. Telmer, D. Ravichandran, P. Spirtes, Nataša Miškov-Živanov","doi":"10.1007/978-3-319-67471-1_9","DOIUrl":"https://doi.org/10.1007/978-3-319-67471-1_9","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"27 2","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2017-06-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"120983233","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Houssam Abbas, Alena Rodionova, E. Bartocci, S. Smolka, R. Grosu
{"title":"Quantitative Regular Expressions for Arrhythmia Detection Algorithms","authors":"Houssam Abbas, Alena Rodionova, E. Bartocci, S. Smolka, R. Grosu","doi":"10.1007/978-3-319-67471-1_2","DOIUrl":"https://doi.org/10.1007/978-3-319-67471-1_2","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-12-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"125999649","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"A Stochastic Hybrid Approximation for Chemical Kinetics Based on the Linear Noise Approximation","authors":"L. Cardelli, M. Kwiatkowska, L. Laurenti","doi":"10.1007/978-3-319-45177-0_10","DOIUrl":"https://doi.org/10.1007/978-3-319-45177-0_10","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"39 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-09-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130534647","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jasha Sommer-Simpson, J. Reinitz, L. Fridlyand, L. Philipson, O. Radulescu
{"title":"Hybrid Reductions of Computational Models of Ion Channels Coupled to Cellular Biochemistry","authors":"Jasha Sommer-Simpson, J. Reinitz, L. Fridlyand, L. Philipson, O. Radulescu","doi":"10.1007/978-3-319-45177-0_17","DOIUrl":"https://doi.org/10.1007/978-3-319-45177-0_17","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"2 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-09-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123207534","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"PREMER: Parallel Reverse Engineering of Biological Networks with Information Theory","authors":"A. F. Villaverde, Kolja Becker, J. Banga","doi":"10.1007/978-3-319-45177-0_21","DOIUrl":"https://doi.org/10.1007/978-3-319-45177-0_21","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"2 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-09-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134215884","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}