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Computational Methods in Systems Biology最新文献

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Derivation of a Biomass Proxy for Dynamic Analysis of Whole Genome Metabolic Models 全基因组代谢模型动态分析的生物量代理的推导
Computational Methods in Systems Biology Pub Date : 2018-09-12 DOI: 10.1007/978-3-319-99429-1_3
Timothy Self, D. Gilbert, M. Heiner
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引用次数: 1
Inferring Mechanism of Action of an Unknown Compound from Time Series Omics Data 从时间序列组学数据推断未知化合物的作用机制
Computational Methods in Systems Biology Pub Date : 2018-09-12 DOI: 10.1007/978-3-319-99429-1_14
A. Vertes, Albert-Baskar Arul, P. Avar, Andrew R. Korte, Hang Li, P. Nemes, Lida Parvin, Sylwia Stopka, S. Hwang, Ziad J. Sahab, Linwen Zhang, Deborah I. Bunin, M. Knapp, Andy Poggio, Mark-Oliver Stehr, C. Talcott, Brian M. Davis, Sean R. Dinn, Christine A. Morton, Christopher J. Sevinsky, M. Zavodszky
{"title":"Inferring Mechanism of Action of an Unknown Compound from Time Series Omics Data","authors":"A. Vertes, Albert-Baskar Arul, P. Avar, Andrew R. Korte, Hang Li, P. Nemes, Lida Parvin, Sylwia Stopka, S. Hwang, Ziad J. Sahab, Linwen Zhang, Deborah I. Bunin, M. Knapp, Andy Poggio, Mark-Oliver Stehr, C. Talcott, Brian M. Davis, Sean R. Dinn, Christine A. Morton, Christopher J. Sevinsky, M. Zavodszky","doi":"10.1007/978-3-319-99429-1_14","DOIUrl":"https://doi.org/10.1007/978-3-319-99429-1_14","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"73 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124680151","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 8
KaSa: A Static Analyzer for Kappa KaSa: Kappa的静态分析器
Computational Methods in Systems Biology Pub Date : 2018-09-12 DOI: 10.1007/978-3-319-99429-1_17
Pierre Boutillier, Ferdinanda Camporesi, Jean Coquet, Jérôme Feret, Kim Quyên Lý, N. Théret, Pierre Vignet
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引用次数: 8
Synthesis for Vesicle Traffic Systems 囊泡交通系统的合成
Computational Methods in Systems Biology Pub Date : 2018-09-12 DOI: 10.1007/978-3-319-99429-1_6
Ashutosh Gupta, Somya Mani, Ankit Shukla
{"title":"Synthesis for Vesicle Traffic Systems","authors":"Ashutosh Gupta, Somya Mani, Ankit Shukla","doi":"10.1007/978-3-319-99429-1_6","DOIUrl":"https://doi.org/10.1007/978-3-319-99429-1_6","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"53 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131388637","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
LNA++: Linear Noise Approximation with First and Second Order Sensitivities lna++:具有一阶和二阶灵敏度的线性噪声近似
Computational Methods in Systems Biology Pub Date : 2018-09-12 DOI: 10.1007/978-3-319-99429-1_19
Justin Feigelman, Daniel Weindl, Fabian J Theis, C. Marr, J. Hasenauer
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引用次数: 0
ASSA-PBN 3.0: Analysing Context-Sensitive Probabilistic Boolean Networks ASSA-PBN 3.0:分析上下文敏感的概率布尔网络
Computational Methods in Systems Biology Pub Date : 2018-09-12 DOI: 10.1007/978-3-319-99429-1_16
Andrzej Mizera, Jun Pang, Hongyang Qu, Qixia Yuan
{"title":"ASSA-PBN 3.0: Analysing Context-Sensitive Probabilistic Boolean Networks","authors":"Andrzej Mizera, Jun Pang, Hongyang Qu, Qixia Yuan","doi":"10.1007/978-3-319-99429-1_16","DOIUrl":"https://doi.org/10.1007/978-3-319-99429-1_16","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"12 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"125649935","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Modeling and Engineering Promoters with Pre-defined RNA Production Dynamics in Escherichia Coli 大肠杆菌中预定义RNA生产动力学启动子的建模和工程
Computational Methods in Systems Biology Pub Date : 2018-09-12 DOI: 10.1007/978-3-319-99429-1_1
Samuel M. D. Oliveira, Mohamed N. M. Bahrudeen, S. Startceva, Vinodh Kandavalli, A. Ribeiro
{"title":"Modeling and Engineering Promoters with Pre-defined RNA Production Dynamics in Escherichia Coli","authors":"Samuel M. D. Oliveira, Mohamed N. M. Bahrudeen, S. Startceva, Vinodh Kandavalli, A. Ribeiro","doi":"10.1007/978-3-319-99429-1_1","DOIUrl":"https://doi.org/10.1007/978-3-319-99429-1_1","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"17 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"132601445","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Deep Abstractions of Chemical Reaction Networks 化学反应网络的深度抽象
Computational Methods in Systems Biology Pub Date : 2018-09-12 DOI: 10.1007/978-3-319-99429-1_2
L. Bortolussi, L. Palmieri
{"title":"Deep Abstractions of Chemical Reaction Networks","authors":"L. Bortolussi, L. Palmieri","doi":"10.1007/978-3-319-99429-1_2","DOIUrl":"https://doi.org/10.1007/978-3-319-99429-1_2","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"136 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"133870212","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 9
Pint: A Static Analyzer for Transient Dynamics of Qualitative Networks with IPython Interface 一种基于ippython接口的定性网络瞬态动态静态分析器
Computational Methods in Systems Biology Pub Date : 2017-09-27 DOI: 10.1007/978-3-319-67471-1_20
Loïc Paulevé
{"title":"Pint: A Static Analyzer for Transient Dynamics of Qualitative Networks with IPython Interface","authors":"Loïc Paulevé","doi":"10.1007/978-3-319-67471-1_20","DOIUrl":"https://doi.org/10.1007/978-3-319-67471-1_20","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"84 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2017-09-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"117102186","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 30
Explaining Response to Drugs Using Pathway Logic 利用通路逻辑解释药物反应
Computational Methods in Systems Biology Pub Date : 2017-09-27 DOI: 10.1007/978-3-319-67471-1_15
C. Talcott, M. Knapp
{"title":"Explaining Response to Drugs Using Pathway Logic","authors":"C. Talcott, M. Knapp","doi":"10.1007/978-3-319-67471-1_15","DOIUrl":"https://doi.org/10.1007/978-3-319-67471-1_15","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"646 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2017-09-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121989555","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 6
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