Seibutsu ButsuriPub Date : 2014-08-20DOI: 10.2142/BIOPHYS.54.S210_2
Tetsunari Kimura, Shoko Ishii, T. Tosha, Y. Shiro, M. Kubo
{"title":"2P092 Characterization of transient NO-bound form of Nitric Oxide Reductase by Transient Absorption Spectroscopy(02. Heme proteins,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))","authors":"Tetsunari Kimura, Shoko Ishii, T. Tosha, Y. Shiro, M. Kubo","doi":"10.2142/BIOPHYS.54.S210_2","DOIUrl":"https://doi.org/10.2142/BIOPHYS.54.S210_2","url":null,"abstract":"","PeriodicalId":409321,"journal":{"name":"Seibutsu Butsuri","volume":"49 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"114331293","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Seibutsu ButsuriPub Date : 2014-08-20DOI: 10.2142/biophys.54.S171_6
Chien-Jung Lo, Meiting Chen
{"title":"1P186 Direct measurement of Vibrio alginolyticus polar flagellum growth rate(12. Cell biology,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))","authors":"Chien-Jung Lo, Meiting Chen","doi":"10.2142/biophys.54.S171_6","DOIUrl":"https://doi.org/10.2142/biophys.54.S171_6","url":null,"abstract":"","PeriodicalId":409321,"journal":{"name":"Seibutsu Butsuri","volume":"43 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123684350","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Seibutsu ButsuriPub Date : 2014-08-20DOI: 10.2142/biophys.54.S330_1
G. Kurisu
{"title":"Modifications to the Protein Data Bank : A new PDB format, Data Deposition, and Validation Report(PDBj: Protein Data Bank Japan,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))","authors":"G. Kurisu","doi":"10.2142/biophys.54.S330_1","DOIUrl":"https://doi.org/10.2142/biophys.54.S330_1","url":null,"abstract":"","PeriodicalId":409321,"journal":{"name":"Seibutsu Butsuri","volume":"51 4 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116831781","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Seibutsu ButsuriPub Date : 2014-08-20DOI: 10.2142/BIOPHYS.54.S240_2
Koya Kato, G. Chikenji
{"title":"2P272 A Ligand Based Virtual Screening method that takes into account of protein-ligand interactions(22A. Bioinformatics:Structural genomics,Poster)","authors":"Koya Kato, G. Chikenji","doi":"10.2142/BIOPHYS.54.S240_2","DOIUrl":"https://doi.org/10.2142/BIOPHYS.54.S240_2","url":null,"abstract":"","PeriodicalId":409321,"journal":{"name":"Seibutsu Butsuri","volume":"200 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124477007","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Seibutsu ButsuriPub Date : 2014-08-20DOI: 10.2142/biophys.54.S294_2
Z. Kalay, Y. Yoshinari, Y. Harada
{"title":"3P272 Observing the rotational diffusion of nanodiamonds with arbitrary nitrogen vacancy center configurations(24. Mathematical biology,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))","authors":"Z. Kalay, Y. Yoshinari, Y. Harada","doi":"10.2142/biophys.54.S294_2","DOIUrl":"https://doi.org/10.2142/biophys.54.S294_2","url":null,"abstract":"","PeriodicalId":409321,"journal":{"name":"Seibutsu Butsuri","volume":"45 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128184197","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Seibutsu ButsuriPub Date : 2014-08-20DOI: 10.2142/BIOPHYS.54.S204_2
Tomoko Kunihara, Yuuki Hayashi, M. Arai
{"title":"2P056 Interaction of the intrinsically disordered HIV-1 Tat protein with the KIX domain of the transcriptional coactivator CBP(01C. Protein: Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))","authors":"Tomoko Kunihara, Yuuki Hayashi, M. Arai","doi":"10.2142/BIOPHYS.54.S204_2","DOIUrl":"https://doi.org/10.2142/BIOPHYS.54.S204_2","url":null,"abstract":"","PeriodicalId":409321,"journal":{"name":"Seibutsu Butsuri","volume":"183 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"127025658","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Seibutsu ButsuriPub Date : 2014-08-20DOI: 10.2142/BIOPHYS.54.S122_3
N. Suematsu
{"title":"1SCP-04 Self-propelled water droplet coupled with chemical oscillatory reaction(1SCP Nonlinear physico-chemical systems moving like living organisms,Symposium,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))","authors":"N. Suematsu","doi":"10.2142/BIOPHYS.54.S122_3","DOIUrl":"https://doi.org/10.2142/BIOPHYS.54.S122_3","url":null,"abstract":"","PeriodicalId":409321,"journal":{"name":"Seibutsu Butsuri","volume":"76 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128865809","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Seibutsu ButsuriPub Date : 2014-08-20DOI: 10.2142/BIOPHYS.54.S124_4
Ryang Kim, Mio Nonaka, Nan Yagishita-Kyo, T. Kawashima, Masatoshi Inoue, Yuichiro Ishii, Toshihiro Endo, Hajime Fujii, S. Takemoto-Kimura, H. Okuno, H. Bito
{"title":"1SEP-04 Activity-dependent gene expression in learning and memory(1SEP Cooperativity in shaping the nerve cell function,Symposium,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))","authors":"Ryang Kim, Mio Nonaka, Nan Yagishita-Kyo, T. Kawashima, Masatoshi Inoue, Yuichiro Ishii, Toshihiro Endo, Hajime Fujii, S. Takemoto-Kimura, H. Okuno, H. Bito","doi":"10.2142/BIOPHYS.54.S124_4","DOIUrl":"https://doi.org/10.2142/BIOPHYS.54.S124_4","url":null,"abstract":"Ca 2+ /Calmodulin-dependent kinase II (CaMKII) is one of the most important signaling molecules for synaptic plasticity underlying learning and memory. Here, we developed a photo-activatable CaMKII (paCaMKII). Light-induced spine specific CaMKII activation successfully induced the structural plasticity, which suggesting that CaMKII activation is sufficient for the plasticity. In addition, we imaged the activity of Rho GTPases, RhoA and Cdc42, by using 2pFLIM and found that these molecules are activated via CaMKII. Furthermore, since the loss of function assay suggests that RhoA and Cdc42 works for triggering and maintaining the structural plasticity, respectively, these molecules may cooperatively work for establishing the spine structural plasticity. The plasma membrane (PM) of neuronal cells is split into two regions with distinct functions, the somatodendritic domain (neuronal signal input) and axon (output). Many PM molecules reside in either one of the two domains, which is enabled by the presence of a diffusion barrier in the PM in the initial segment (IS) region, the interface between the two domains. The diffusion barrier is formed by the cooperative assembly and binding of transmembrane proteins and scaffolding actin-binding molecules. Recently, we found that the diffusion barrier is a molecule-selective filter, allowing GPI-anchored proteins to pass through, but not transmembrane proteins and phospholipids. The mechanism for the selective passage is becoming clear, which will be discussed in this talk. Long-term memory formation requires a complex coordination of signaling to enable specific storage of otherwise transient information acquired as memory events happen. How does such conversion from labile into a more stable information occur? We here our recent on multiple levels of signal cooperation, at the synaptic, dendritic and nuclear compartments of a neuron, which together contribute to achieving this formidable signal processing. Recent human genome sequencing studies indicate that maladaptation of such signaling cascades may underlie several forms of","PeriodicalId":409321,"journal":{"name":"Seibutsu Butsuri","volume":"47 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126722431","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Seibutsu ButsuriPub Date : 2014-08-20DOI: 10.2142/BIOPHYS.54.S185_4
T. Kunisawa
{"title":"1P268 Evolutionary Relationships of Clostridia Species(22D. Bioinformatics:Molecular evolution,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))","authors":"T. Kunisawa","doi":"10.2142/BIOPHYS.54.S185_4","DOIUrl":"https://doi.org/10.2142/BIOPHYS.54.S185_4","url":null,"abstract":"","PeriodicalId":409321,"journal":{"name":"Seibutsu Butsuri","volume":"33 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126837876","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}