Leyla Jael Castro, S. Soiland-Reyes, Dietrich Rebholz-Schuhmann
{"title":"RO-Crates Meets FAIR Digital Objects","authors":"Leyla Jael Castro, S. Soiland-Reyes, Dietrich Rebholz-Schuhmann","doi":"10.52825/cordi.v1i.396","DOIUrl":"https://doi.org/10.52825/cordi.v1i.396","url":null,"abstract":"RO-Crates makes it easier to package research digital objects together with their metadata so both dependencies and context can be captured. Combined with FAIR good practices such as the use of persistent identifiers, inclusion of license, clear object provenance, and adherence to community standards, RO-crates provides a way to increase FAIRness in science. In this abstract we present the use of RO-Crates, combined with Linked Data best practices, as an implementation for lightweight FAIR Digital Objects, and its possible use in NFDI consortia.","PeriodicalId":359879,"journal":{"name":"Proceedings of the Conference on Research Data Infrastructure","volume":"2 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"114978291","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Heiko B. Weber, S. Brockhauser, C. Koch, Laurenz Rettig, Martin Aeschlimann, Walid Hetaba, Marius Grundmann, M. Kühbach, Michael Krieger
{"title":"Research Data Management for Experiments in Solid-State Physics: Concepts","authors":"Heiko B. Weber, S. Brockhauser, C. Koch, Laurenz Rettig, Martin Aeschlimann, Walid Hetaba, Marius Grundmann, M. Kühbach, Michael Krieger","doi":"10.52825/cordi.v1i.283","DOIUrl":"https://doi.org/10.52825/cordi.v1i.283","url":null,"abstract":"FAIRmat develops concepts for paving the way to enable FAIR research data in solid-state physics. For selected theoretical data in this field, the NOMAD portal has developed mature concepts and technological solutions for storing data according to the FAIR principles. Extending this approach to experimental data is challenging due to their diversity and missing standards. In this paper we present our comprehensive approach to establish FAIR data in the field of experimental solid-state physics despite its heterogeneity. The concept includes elaboration of standards, community building and methods that facilitate the community’s transition to FAIR standards.","PeriodicalId":359879,"journal":{"name":"Proceedings of the Conference on Research Data Infrastructure","volume":"39 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"132790195","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Dirk von Suchodoletz, Jonathan Bauer, Marcel Tschöpe
{"title":"DataPLANT Cloud Oriented Service Infrastructure Open for Integration and Adaptation","authors":"Dirk von Suchodoletz, Jonathan Bauer, Marcel Tschöpe","doi":"10.52825/cordi.v1i.414","DOIUrl":"https://doi.org/10.52825/cordi.v1i.414","url":null,"abstract":"A core objective of the DataPLANT consortium is to provide a science gateway as a comprised of flexible cloud based (micro) services. The setup keeps both on-premise installation and future integration into a joint NFDI common infrastructure. We are presenting the DataPLANT DataHUB which provides various RDM workflows to support research data scientists in different phases of the data life cycle – from the development to the publication of the results obtained.","PeriodicalId":359879,"journal":{"name":"Proceedings of the Conference on Research Data Infrastructure","volume":"21 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"132889888","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Zarr A Cloud-Optimized Storage for Interactive Access of Large Arrays","authors":"Josh Moore, S. Kunis","doi":"10.52825/cordi.v1i.285","DOIUrl":"https://doi.org/10.52825/cordi.v1i.285","url":null,"abstract":"For decades, the sharing of large N-dimensional datasets has posed issues across multiple domains. Interactively accessing terabyte-scale data has previously required significant server resources to properly prepare cropped or down-sampled representations on the fly. Now, a cloud-native chunked format easing this burden has been adopted in the bioimaging domain for standardization. The format — Zarr — is potentially of interest for other consortia and sections of NFDI.","PeriodicalId":359879,"journal":{"name":"Proceedings of the Conference on Research Data Infrastructure","volume":"4 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"133471388","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Barbara Ebert, Sami Domisch, Christin Henzen, Jimena Linares, Kati Mozygemba, Bernhard Miller, Bernhard Seeger, Jörg Seegert
{"title":"When Data Crosses Borders - Join Forces! Multidisciplinary Use Cases Within NFDI","authors":"Barbara Ebert, Sami Domisch, Christin Henzen, Jimena Linares, Kati Mozygemba, Bernhard Miller, Bernhard Seeger, Jörg Seegert","doi":"10.52825/cordi.v1i.341","DOIUrl":"https://doi.org/10.52825/cordi.v1i.341","url":null,"abstract":"A multidisciplinary use-case for integrating research data involves data, software and methods across research disciplines to address research questions that cannot be effectively addressed by a single discipline or method alone. They thus contribute to NFDI’s goal to make a significant contribution to answering novel interdisciplinary research questions. This paper presents some examples for multidisciplinary use-cases that illustrate that, in order to reap the added benefits of these use-cases, some effort is required. The paper concludes by proposing some cornerstones for handling multidisciplinary use-cases.","PeriodicalId":359879,"journal":{"name":"Proceedings of the Conference on Research Data Infrastructure","volume":"69 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"133485169","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Marco Beccuti, A. d’Acierno, Simone Donetti, S. G. Contaldo, Paolo Romano, G. Varese
{"title":"ICT Infrastructure Supporting the Italian Research Infrastructure on Microbial Resources MIRRI-IT","authors":"Marco Beccuti, A. d’Acierno, Simone Donetti, S. G. Contaldo, Paolo Romano, G. Varese","doi":"10.52825/cordi.v1i.400","DOIUrl":"https://doi.org/10.52825/cordi.v1i.400","url":null,"abstract":"In this extended abstract we present the main objectives of SUS-MIRRI.it and the ICT infrastructure that was designed and implemented to support such a project. This ICT infrastructure is adequate for the needs of similar research infrastructures","PeriodicalId":359879,"journal":{"name":"Proceedings of the Conference on Research Data Infrastructure","volume":"32 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"133232916","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Paolo Dolcet, Mariam L. Schulte, Florian Maurer, Nicole Jung, Rinu Chacko, Olaf Deutschmann, J. Grunwaldt
{"title":"LabIMotion Electronic Lab Notebook as Research Data Management Tool in Catalysis","authors":"Paolo Dolcet, Mariam L. Schulte, Florian Maurer, Nicole Jung, Rinu Chacko, Olaf Deutschmann, J. Grunwaldt","doi":"10.52825/cordi.v1i.334","DOIUrl":"https://doi.org/10.52825/cordi.v1i.334","url":null,"abstract":"In the field of heterogenous catalysis, Electronic Lab Notebooks (ELNs) are only rarely employed, due to complex data structure and different needs of the community with respect to the typical features provided by wide-spread ELNs. On the contrary, LabIMotion, an extension of the open-source ELN Chemotion, adapts to the characteristic complex workflows in heterogenous catalysis; these encompass catalyst synthesis, adaptation of devices and testing rigs, activity measurements, material characterization (possibly also in situ/operando, at large scale facilities) and are complemented by mathematical modelling and simulation. Direct links to metadata catalogues like SciCat (for synchrotron/neutron characterizations) and advanced research data management tools like Adacta (for improved traceability of catalytic data, experimental setups and related resources) are envisioned. The adaptability of LabIMotion in the catalysis field is presented via the topical examples of Cu-based catalysts for methanol synthesis and noble metal-based emission control catalysts.","PeriodicalId":359879,"journal":{"name":"Proceedings of the Conference on Research Data Infrastructure","volume":"81 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124894877","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Steffen Neumann, Felix Bach, Leyla Jael Castro, Tillmann Fischer, Stefan Hofmann, Pei‐Chi Huang, Nicole Jung, Bhavin Katabathuni, Fabian Mauz, René Meier, V. C. Nainala, Noura Rayya, Christoph Steinbeck, O. Koepler
{"title":"Harmonising, Harvesting, and Searching Metadata Across a Repository Federation","authors":"Steffen Neumann, Felix Bach, Leyla Jael Castro, Tillmann Fischer, Stefan Hofmann, Pei‐Chi Huang, Nicole Jung, Bhavin Katabathuni, Fabian Mauz, René Meier, V. C. Nainala, Noura Rayya, Christoph Steinbeck, O. Koepler","doi":"10.52825/cordi.v1i.202","DOIUrl":"https://doi.org/10.52825/cordi.v1i.202","url":null,"abstract":"The collection of metadata for research data is an important aspect in the FAIR principles. The schema.org and Bioschemas initiatives created a vocabulary to embed markup for many different types, including BioChemEntity, ChemicalSubstance, Gene, MolecularEntity, Protein, and others relevant in the Natural and Life Sciences with immediate benefits for findability of data packages. To bridge the gap between the worlds of semantic-web-driven JSON+LD metadata on the one hand, and established but separately developed interface services in libraries, we have designed an architecture for harmonising, federating and harvesting metadata from several resources. Our approach is to serve JSON+LD embedded in an XML container through a central OAI-Provider. Several resources in NFDI4Chem provide such domain-specific metadata. The CKAN-based NFDI4Chem search service can harvest this metadata using an OAI-PMH harvester extension that can extract the XML-encapsulated JSON+LD metadata, and has search capabilities relevant in the chemistry domain. We invite the community to collaborate and reach a critical mass of providers and consumers in the NFDI.","PeriodicalId":359879,"journal":{"name":"Proceedings of the Conference on Research Data Infrastructure","volume":"8 8 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130180509","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ramona Voshage, S. K. Sikder, Stefano Della Chiesa, Tobias Krüger, M. Schorcht, G. Meinel
{"title":"Data, Tools and Services for Spatial Sustainability Science The Story of the New IOER Research Data Centre","authors":"Ramona Voshage, S. K. Sikder, Stefano Della Chiesa, Tobias Krüger, M. Schorcht, G. Meinel","doi":"10.52825/cordi.v1i.322","DOIUrl":"https://doi.org/10.52825/cordi.v1i.322","url":null,"abstract":"The emerging research data centre (RDC) at the Leibniz Institute of Ecological Urban and Regional Development (IOER) constitutes an essential milestone towards promoting sustainable land transition and transformative urban and regional development. The IOER RDC leverages spatial data science and artificial intelligence to process and analyse diverse and complex data sources. It provides high-resolution indicator maps of land use, ecosystems, and settlement structures, as well as cross-scale and cross-disciplinary spatial analyses, modelling, and simulations. Moreover, the IOER RDC offers digital tools to support decision-making, policy planning, and sustainable transformations. Hence, the IOER RDC has the potential to foster a sustainable future by facilitating the transition towards sustainable land use and development in urban and regional areas. The IOER RDC's endeavours offer a path towards addressing pressing societal challenges, such as rapid urbanisation, environmental degradation, climate change, and social inequality.","PeriodicalId":359879,"journal":{"name":"Proceedings of the Conference on Research Data Infrastructure","volume":"73 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130263229","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Sven Lieber, Ann Van Camp, Dieter De Witte, Eva Coudyzer, Erik Buelinckx, Els Angenon, Hannes Lowagie, Julie M. Birkholz, Karine Lasaracina
{"title":"MetaBelgica Project A Linked Data Infrastructure Between Federal Scientific Institutes in Belgium","authors":"Sven Lieber, Ann Van Camp, Dieter De Witte, Eva Coudyzer, Erik Buelinckx, Els Angenon, Hannes Lowagie, Julie M. Birkholz, Karine Lasaracina","doi":"10.52825/cordi.v1i.381","DOIUrl":"https://doi.org/10.52825/cordi.v1i.381","url":null,"abstract":"Trustworthy metadata about entities related to cultural heritage is important to correctly identify bibliographic meta-data, attribute works, identify works of public domain (based on contributors’ date of death), or to support Named Entity Linking (NEL) for digitised documents. However, in Belgium such data is currently dispersed between numerous institutions, modelled with different ontologies, represented in different formats and curated in different languages. GLAM institutions would profit from data about Belgian entities to correctly annotate their collections.Furthermore, this would facilitate research in Belgium and abroad. The current situation does not only complicate data exchange in a national and international setting, but also leads to duplicate data curation efforts and data quality issues, negatively impacting the users’ experience.\u0000This paper introduces the MetaBelgica project, coordinated by KBR - The Royal Library of Belgium with the Royal Museums of Fine Arts, the Royal institute for Cultural Heritage, and the Royal Museum of Art and History, to improve the status quo. The aforementioned Federal Scientific Institutes (FSIs), belonging to the Belgian Science Policy Office (BELSPO), joined forces to develop a shared Linked Data platform for managing shared entities. This platform, based on Wikibase (the technology behind Wikidata), aims to ensure FAIR data about persons, organisations, time/events and locations related to Belgian cultural heritage. We will integrate data about millions of Belgian entities from the four participating FSIs into a Wikibase instance and make it accessible by using Persistent Identifiers. This will not only professionalize our own data management and improve data quality, but according to received project support letters, also impact other regional, national and European institutions.","PeriodicalId":359879,"journal":{"name":"Proceedings of the Conference on Research Data Infrastructure","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121423540","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}