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A Fast Genome Sequence Aligner Based on Minimal Perfect Hash Algorithm Realized with FPGA Based Heterogeneous Computing Platform 基于FPGA的异构计算平台实现的基于最小完美哈希算法的快速基因组序列比对器
International Symposium on Bioinformatics Research and Applications Pub Date : 2018-06-08 DOI: 10.1007/978-3-319-94968-0_21
Ke Huang, Shubo Yang, Zhaojian Luo, Ke Yang, Menghan Chen, Guopeng Wei, Jian Huang
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引用次数: 0
XPredRBR: Accurate and Fast Prediction of RNA-Binding Residues in Proteins Using eXtreme Gradient Boosting XPredRBR:利用极端梯度增强技术准确快速地预测蛋白质中rna结合残基
International Symposium on Bioinformatics Research and Applications Pub Date : 2018-06-08 DOI: 10.1007/978-3-319-94968-0_14
L. Deng, Z. Dong, Hui Liu
{"title":"XPredRBR: Accurate and Fast Prediction of RNA-Binding Residues in Proteins Using eXtreme Gradient Boosting","authors":"L. Deng, Z. Dong, Hui Liu","doi":"10.1007/978-3-319-94968-0_14","DOIUrl":"https://doi.org/10.1007/978-3-319-94968-0_14","url":null,"abstract":"","PeriodicalId":354035,"journal":{"name":"International Symposium on Bioinformatics Research and Applications","volume":"192 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134523708","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Combining Sequence and Epigenomic Data to Predict Transcription Factor Binding Sites Using Deep Learning 结合序列和表观基因组数据预测转录因子结合位点使用深度学习
International Symposium on Bioinformatics Research and Applications Pub Date : 2018-06-08 DOI: 10.1007/978-3-319-94968-0_23
Fang Jing, Shaowu Zhang, Zhen Cao, Shi-Hua Zhang
{"title":"Combining Sequence and Epigenomic Data to Predict Transcription Factor Binding Sites Using Deep Learning","authors":"Fang Jing, Shaowu Zhang, Zhen Cao, Shi-Hua Zhang","doi":"10.1007/978-3-319-94968-0_23","DOIUrl":"https://doi.org/10.1007/978-3-319-94968-0_23","url":null,"abstract":"","PeriodicalId":354035,"journal":{"name":"International Symposium on Bioinformatics Research and Applications","volume":"35 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123943225","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
A Biologically Meaningful Extension of the Efficient Method for Deleterious Mutations Prediction in RNAs: Insertions and Deletions in Addition to Substitution Mutations 对rna有害突变预测有效方法的有生物学意义的扩展:除了替代突变之外的插入和缺失
International Symposium on Bioinformatics Research and Applications Pub Date : 2018-06-08 DOI: 10.1007/978-3-319-94968-0_15
A. Churkin, D. Barash
{"title":"A Biologically Meaningful Extension of the Efficient Method for Deleterious Mutations Prediction in RNAs: Insertions and Deletions in Addition to Substitution Mutations","authors":"A. Churkin, D. Barash","doi":"10.1007/978-3-319-94968-0_15","DOIUrl":"https://doi.org/10.1007/978-3-319-94968-0_15","url":null,"abstract":"","PeriodicalId":354035,"journal":{"name":"International Symposium on Bioinformatics Research and Applications","volume":"23 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129004033","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
On k-Mismatch Shortest Unique Substring Queries Using GPU 基于GPU的k-失配最短唯一子串查询
International Symposium on Bioinformatics Research and Applications Pub Date : 2018-06-08 DOI: 10.1007/978-3-319-94968-0_18
Daniel W. Schultz, Bojian Xu
{"title":"On k-Mismatch Shortest Unique Substring Queries Using GPU","authors":"Daniel W. Schultz, Bojian Xu","doi":"10.1007/978-3-319-94968-0_18","DOIUrl":"https://doi.org/10.1007/978-3-319-94968-0_18","url":null,"abstract":"","PeriodicalId":354035,"journal":{"name":"International Symposium on Bioinformatics Research and Applications","volume":"34 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123064893","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Prediction of Drug Response with a Topology Based Dual-Layer Network Model 基于拓扑的双层网络模型的药物反应预测
International Symposium on Bioinformatics Research and Applications Pub Date : 2018-06-08 DOI: 10.1007/978-3-319-94968-0_1
Suyun Huang, Xingming Zhao
{"title":"Prediction of Drug Response with a Topology Based Dual-Layer Network Model","authors":"Suyun Huang, Xingming Zhao","doi":"10.1007/978-3-319-94968-0_1","DOIUrl":"https://doi.org/10.1007/978-3-319-94968-0_1","url":null,"abstract":"","PeriodicalId":354035,"journal":{"name":"International Symposium on Bioinformatics Research and Applications","volume":"212 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"117291657","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
LSTM Recurrent Neural Networks for Influenza Trends Prediction 用于流感趋势预测的LSTM递归神经网络
International Symposium on Bioinformatics Research and Applications Pub Date : 2018-06-08 DOI: 10.1007/978-3-319-94968-0_25
Liyuan Liu, Meng Han, Yiyun Zhou, Yan Wang
{"title":"LSTM Recurrent Neural Networks for Influenza Trends Prediction","authors":"Liyuan Liu, Meng Han, Yiyun Zhou, Yan Wang","doi":"10.1007/978-3-319-94968-0_25","DOIUrl":"https://doi.org/10.1007/978-3-319-94968-0_25","url":null,"abstract":"","PeriodicalId":354035,"journal":{"name":"International Symposium on Bioinformatics Research and Applications","volume":"28 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126099446","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 53
Novel Inhibitors of T315I Mutant BCR-ABL1 Tyrosine Kinase for Chronic Myeloid Leukemia Disease Through Fragment-Based Drug Design 基于片段药物设计的新型T315I突变体BCR-ABL1酪氨酸激酶抑制剂治疗慢性髓性白血病
International Symposium on Bioinformatics Research and Applications Pub Date : 2018-06-08 DOI: 10.1007/978-3-319-94968-0_17
Satya Anindita, A. Marnolia, Hersal Hermana Putra, M. Haikal, U. S. Tambunan
{"title":"Novel Inhibitors of T315I Mutant BCR-ABL1 Tyrosine Kinase for Chronic Myeloid Leukemia Disease Through Fragment-Based Drug Design","authors":"Satya Anindita, A. Marnolia, Hersal Hermana Putra, M. Haikal, U. S. Tambunan","doi":"10.1007/978-3-319-94968-0_17","DOIUrl":"https://doi.org/10.1007/978-3-319-94968-0_17","url":null,"abstract":"","PeriodicalId":354035,"journal":{"name":"International Symposium on Bioinformatics Research and Applications","volume":"51 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"117347402","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Hierarchical Similarity Network Fusion for Discovering Cancer Subtypes 层次相似网络融合发现癌症亚型
International Symposium on Bioinformatics Research and Applications Pub Date : 2018-06-08 DOI: 10.1007/978-3-319-94968-0_11
Shuhui Liu, Xuequn Shang
{"title":"Hierarchical Similarity Network Fusion for Discovering Cancer Subtypes","authors":"Shuhui Liu, Xuequn Shang","doi":"10.1007/978-3-319-94968-0_11","DOIUrl":"https://doi.org/10.1007/978-3-319-94968-0_11","url":null,"abstract":"","PeriodicalId":354035,"journal":{"name":"International Symposium on Bioinformatics Research and Applications","volume":"8 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"127430519","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 8
Inferring Dysregulated Pathways of Driving Cancer Subtypes Through Multi-omics Integration 通过多组学整合推断驱动癌症亚型的失调途径
International Symposium on Bioinformatics Research and Applications Pub Date : 2018-06-08 DOI: 10.1007/978-3-319-94968-0_9
Kai Shi, Lin Gao, Bingbo Wang
{"title":"Inferring Dysregulated Pathways of Driving Cancer Subtypes Through Multi-omics Integration","authors":"Kai Shi, Lin Gao, Bingbo Wang","doi":"10.1007/978-3-319-94968-0_9","DOIUrl":"https://doi.org/10.1007/978-3-319-94968-0_9","url":null,"abstract":"","PeriodicalId":354035,"journal":{"name":"International Symposium on Bioinformatics Research and Applications","volume":"111 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124058470","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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