{"title":"An Interaction-Dependent Model for Transcription Factor Binding","authors":"Li-San Wang, S. Jensen, S. Hannenhalli","doi":"10.1007/978-3-540-48540-7_19","DOIUrl":"https://doi.org/10.1007/978-3-540-48540-7_19","url":null,"abstract":"","PeriodicalId":341864,"journal":{"name":"Systems Biology and Regulatory Genomics","volume":"45 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2005-12-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115268229","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Annotation of Promoter Regions in Microbial Genomes Based on DNA Structural and Sequence Properties","authors":"Huiquan Wang, C. Benham","doi":"10.1007/978-3-540-48540-7_18","DOIUrl":"https://doi.org/10.1007/978-3-540-48540-7_18","url":null,"abstract":"","PeriodicalId":341864,"journal":{"name":"Systems Biology and Regulatory Genomics","volume":"54 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2005-12-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"114820137","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences","authors":"S. Sze, Xiaoyan Zhao","doi":"10.1007/978-3-540-48540-7_17","DOIUrl":"https://doi.org/10.1007/978-3-540-48540-7_17","url":null,"abstract":"","PeriodicalId":341864,"journal":{"name":"Systems Biology and Regulatory Genomics","volume":"32 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2005-12-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"125405510","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Examination of the tRNA Adaptation Index as a Predictor of Protein Expression Levels","authors":"Orna Man, J. Sussman, Y. Pilpel","doi":"10.1007/978-3-540-48540-7_10","DOIUrl":"https://doi.org/10.1007/978-3-540-48540-7_10","url":null,"abstract":"","PeriodicalId":341864,"journal":{"name":"Systems Biology and Regulatory Genomics","volume":"24 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2005-12-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129485861","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Topological Robustness of the Protein-Protein Interaction Networks","authors":"Chien-Hung Huang, Jywe-Fei Fang, J. Tsai, K. Ng","doi":"10.1007/978-3-540-48540-7_14","DOIUrl":"https://doi.org/10.1007/978-3-540-48540-7_14","url":null,"abstract":"","PeriodicalId":341864,"journal":{"name":"Systems Biology and Regulatory Genomics","volume":"19 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2005-12-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"133603791","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Wolfgang P. Lehrach, D. Husmeier, Christopher K. I. Williams
{"title":"Probabilistic in Silico Prediction of Protein-Peptide Interactions","authors":"Wolfgang P. Lehrach, D. Husmeier, Christopher K. I. Williams","doi":"10.1007/978-3-540-48540-7_16","DOIUrl":"https://doi.org/10.1007/978-3-540-48540-7_16","url":null,"abstract":"","PeriodicalId":341864,"journal":{"name":"Systems Biology and Regulatory Genomics","volume":"35 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2005-12-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124956160","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
S. Suthram, T. Shlomi, E. Ruppin, R. Sharan, T. Ideker
{"title":"Comparison of Protein-Protein Interaction Confidence Assignment Schemes","authors":"S. Suthram, T. Shlomi, E. Ruppin, R. Sharan, T. Ideker","doi":"10.1007/978-3-540-48540-7_4","DOIUrl":"https://doi.org/10.1007/978-3-540-48540-7_4","url":null,"abstract":"","PeriodicalId":341864,"journal":{"name":"Systems Biology and Regulatory Genomics","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2005-12-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129325228","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Systems Biology and Regulatory Genomics, Joint Annual RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics, San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers","authors":"on Regulatory Genomics, E. Eskin","doi":"10.1007/978-3-540-48540-7","DOIUrl":"https://doi.org/10.1007/978-3-540-48540-7","url":null,"abstract":"","PeriodicalId":341864,"journal":{"name":"Systems Biology and Regulatory Genomics","volume":"72 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"1900-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121576985","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}