{"title":"RDM4mic working group– Research Data Management for microscopy data as a community task","authors":"S. Kunis","doi":"10.22443/rms.elmi2021.187","DOIUrl":"https://doi.org/10.22443/rms.elmi2021.187","url":null,"abstract":"","PeriodicalId":334941,"journal":{"name":"Proceedings of the European Light Microscopy Initiative 2021","volume":"155 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-06-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123271956","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Multispectral confocal analysis of a real-time stem cell monitoring system","authors":"L. Acevedo","doi":"10.22443/rms.elmi2021.12","DOIUrl":"https://doi.org/10.22443/rms.elmi2021.12","url":null,"abstract":"","PeriodicalId":334941,"journal":{"name":"Proceedings of the European Light Microscopy Initiative 2021","volume":"3 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-06-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116069165","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Bacterial bioimage analysis using open-source deep learning approaches","authors":"Christoph Spahn","doi":"10.22443/rms.elmi2021.39","DOIUrl":"https://doi.org/10.22443/rms.elmi2021.39","url":null,"abstract":"","PeriodicalId":334941,"journal":{"name":"Proceedings of the European Light Microscopy Initiative 2021","volume":"27 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-06-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121157101","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Near infra-red branding (NIRB) in tissue: an efficient guide between different imaging modalities in 3D","authors":"E. V. Hamme","doi":"10.22443/rms.elmi2021.52","DOIUrl":"https://doi.org/10.22443/rms.elmi2021.52","url":null,"abstract":"","PeriodicalId":334941,"journal":{"name":"Proceedings of the European Light Microscopy Initiative 2021","volume":"34 3","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-06-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"114018306","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"An open source Fiji/ImageJ plugin for 2D mouse brain sections to 3D Allen Brain Atlas registration","authors":"N. Chiaruttini","doi":"10.22443/rms.elmi2021.44","DOIUrl":"https://doi.org/10.22443/rms.elmi2021.44","url":null,"abstract":"","PeriodicalId":334941,"journal":{"name":"Proceedings of the European Light Microscopy Initiative 2021","volume":"5 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-06-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"132956992","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Scalable strategies for interoperable bioimaging data","authors":"Josh Moore","doi":"10.22443/rms.elmi2021.64","DOIUrl":"https://doi.org/10.22443/rms.elmi2021.64","url":null,"abstract":"","PeriodicalId":334941,"journal":{"name":"Proceedings of the European Light Microscopy Initiative 2021","volume":"19 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-06-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115243942","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Deep Learning for Cell Segmentation of Large Multi-Channels Time-Series Data in the Amira™ Software","authors":"J. Giesebrecht","doi":"10.22443/rms.elmi2021.53","DOIUrl":"https://doi.org/10.22443/rms.elmi2021.53","url":null,"abstract":"Quantitative live cell imaging has been widely used to study various dynamical processes in cell biology. Fluorescence microscopy, a popular imaging modality for live cell imaging, has been used to monitor the dynamics of specific molecules in live cells. However, the fluorescence live cell images are highly prone to noise, low contrast, and uneven illumination. These often lead to erroneous cell segmentation, hindering quantitative analyses of dynamical cellular processes.","PeriodicalId":334941,"journal":{"name":"Proceedings of the European Light Microscopy Initiative 2021","volume":"11 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-06-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116671855","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Integrated Confocal Performance Assessment","authors":"A. Schmidt","doi":"10.22443/rms.elmi2021.15","DOIUrl":"https://doi.org/10.22443/rms.elmi2021.15","url":null,"abstract":"","PeriodicalId":334941,"journal":{"name":"Proceedings of the European Light Microscopy Initiative 2021","volume":"22 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-06-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"127685517","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"EOSC-Life is creating an open, collaborative space for digital life science","authors":"Frauke Leitner","doi":"10.22443/rms.elmi2021.48","DOIUrl":"https://doi.org/10.22443/rms.elmi2021.48","url":null,"abstract":"","PeriodicalId":334941,"journal":{"name":"Proceedings of the European Light Microscopy Initiative 2021","volume":"231 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-06-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131963655","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"HSF1 promotes inflammation induced tumor development through ECM remodeling","authors":"Oshrat Levi","doi":"10.22443/rms.elmi2021.68","DOIUrl":"https://doi.org/10.22443/rms.elmi2021.68","url":null,"abstract":"","PeriodicalId":334941,"journal":{"name":"Proceedings of the European Light Microscopy Initiative 2021","volume":"31 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-06-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"133400782","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}