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Molecular & Cellular Proteomics最新文献

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Molecular & Cellular Proteomics Pub Date : 2023-08-01 DOI: 10.1016/s1535-9476(23)00144-5
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引用次数: 0
From AI-driven synthetic biology to prediction of molecular phenotypes 从人工智能驱动的合成生物学到分子表型预测
Molecular & Cellular Proteomics Pub Date : 2022-08-01 DOI: 10.1016/j.mcpro.2022.100296
Karim Aljakouch, Toman Borteçen, Azmal Ali, Nicolàs Palacio-Escat, J. Krijgsveld, Aleksej Zelezniak
{"title":"From AI-driven synthetic biology to prediction of molecular phenotypes","authors":"Karim Aljakouch, Toman Borteçen, Azmal Ali, Nicolàs Palacio-Escat, J. Krijgsveld, Aleksej Zelezniak","doi":"10.1016/j.mcpro.2022.100296","DOIUrl":"https://doi.org/10.1016/j.mcpro.2022.100296","url":null,"abstract":"","PeriodicalId":325853,"journal":{"name":"Molecular & Cellular Proteomics","volume":"9 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116912369","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Discovery of GSTZ1 as a novel target by using fully functionalized fragment-like probes and chemical proteomics 利用全功能化片段样探针和化学蛋白质组学发现GSTZ1作为新的靶点
Molecular & Cellular Proteomics Pub Date : 2022-08-01 DOI: 10.1016/j.mcpro.2022.100345
Emily Oi YingWong, Man Hin Leung, Nan Yang, Jiangli Ren, Shouling Xu, Supna Nair, Kathy L Li, Zhi-yongWang, Al, Burlingame, Ning Li, Yi Liao, Sean Chin Chan, E. Welsh, B. Fang, J. Koomen, Derek R Duckett, E. Haura, Andrii Monastyrskyi, U. Rix
{"title":"Discovery of GSTZ1 as a novel target by using fully functionalized fragment-like probes and chemical proteomics","authors":"Emily Oi YingWong, Man Hin Leung, Nan Yang, Jiangli Ren, Shouling Xu, Supna Nair, Kathy L Li, Zhi-yongWang, Al, Burlingame, Ning Li, Yi Liao, Sean Chin Chan, E. Welsh, B. Fang, J. Koomen, Derek R Duckett, E. Haura, Andrii Monastyrskyi, U. Rix","doi":"10.1016/j.mcpro.2022.100345","DOIUrl":"https://doi.org/10.1016/j.mcpro.2022.100345","url":null,"abstract":"","PeriodicalId":325853,"journal":{"name":"Molecular & Cellular Proteomics","volume":"233 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121865198","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Direct DIA database search with PEAKS Online XPro increases HLA-I peptide identification and bypasses the requirement for large spectral libraries 直接使用PEAKS Online XPro进行DIA数据库搜索，增加了hla - 1肽的鉴定，并绕过了对大型谱库的要求
Molecular & Cellular Proteomics Pub Date : 2022-08-01 DOI: 10.1016/j.mcpro.2022.100338
{"title":"Direct DIA database search with PEAKS Online XPro increases HLA-I peptide identification and bypasses the requirement for large spectral libraries","authors":"","doi":"10.1016/j.mcpro.2022.100338","DOIUrl":"https://doi.org/10.1016/j.mcpro.2022.100338","url":null,"abstract":"","PeriodicalId":325853,"journal":{"name":"Molecular & Cellular Proteomics","volume":"19 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134275471","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
In Situ Cell-Surface Proteomics: Method Development and Applications in Neurobiology 原位细胞表面蛋白质组学:方法发展及其在神经生物学中的应用
Molecular & Cellular Proteomics Pub Date : 2022-08-01 DOI: 10.1016/j.mcpro.2022.100382
Ajay Kumar, M. Midha, Jiefu Li, Shuo Han, Qijing Xie, S. A. Shuster, Hongjie Li, N. Udeshi, Tanya Svinkina, Dominique, K. Carey, D. Mani, Chuanyun Xu, Ricardo Guajardo, U. Chon, David Luginbuhl, C. McLaughlin, Yukari H. Takeo, Tongchao Li, Daniel Orlin, Miley C. Hu, Sayeh Kohani, BingWu, Anthony Xie, Pornchai, Kaewsapsak, Swetha E. Murthy, S. Quake, S. Carr, A. Ting, Liqun Luo
{"title":"In Situ Cell-Surface Proteomics: Method Development and Applications in Neurobiology","authors":"Ajay Kumar, M. Midha, Jiefu Li, Shuo Han, Qijing Xie, S. A. Shuster, Hongjie Li, N. Udeshi, Tanya Svinkina, Dominique, K. Carey, D. Mani, Chuanyun Xu, Ricardo Guajardo, U. Chon, David Luginbuhl, C. McLaughlin, Yukari H. Takeo, Tongchao Li, Daniel Orlin, Miley C. Hu, Sayeh Kohani, BingWu, Anthony Xie, Pornchai, Kaewsapsak, Swetha E. Murthy, S. Quake, S. Carr, A. Ting, Liqun Luo","doi":"10.1016/j.mcpro.2022.100382","DOIUrl":"https://doi.org/10.1016/j.mcpro.2022.100382","url":null,"abstract":"","PeriodicalId":325853,"journal":{"name":"Molecular & Cellular Proteomics","volume":"73 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126164294","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Profiling the cellular signalling state by targeted phoshoproteomics 通过靶向光蛋白组学分析细胞信号状态
Molecular & Cellular Proteomics Pub Date : 2022-08-01 DOI: 10.1016/j.mcpro.2022.100464
Xu Zhang, Ratna R. Thangudu, P. Rudnick, M. Holck, M. MacCoss, N. Edwards, Peter McHarvey, K. Ketchum, Sudha Venkatachan, J. Otridge, Emi Casas-Silva, Erika Kim, Henry Rodriguez, M. V. Bentum, Henrik Zauber, B. Klinger, Mohamed Haji, Philipp Mertins, N. Blüthgen, M. Selbach
{"title":"Profiling the cellular signalling state by targeted phoshoproteomics","authors":"Xu Zhang, Ratna R. Thangudu, P. Rudnick, M. Holck, M. MacCoss, N. Edwards, Peter McHarvey, K. Ketchum, Sudha Venkatachan, J. Otridge, Emi Casas-Silva, Erika Kim, Henry Rodriguez, M. V. Bentum, Henrik Zauber, B. Klinger, Mohamed Haji, Philipp Mertins, N. Blüthgen, M. Selbach","doi":"10.1016/j.mcpro.2022.100464","DOIUrl":"https://doi.org/10.1016/j.mcpro.2022.100464","url":null,"abstract":"","PeriodicalId":325853,"journal":{"name":"Molecular & Cellular Proteomics","volume":"92 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126195951","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Post-Deconvolution MS/MS Spectra Extraction with Data-Independent Acquisition for Comprehensive Profiling of Urinary Conjugated Metabolome 基于数据独立采集的后反褶积MS/MS谱提取用于尿偶联代谢组的综合分析
Molecular & Cellular Proteomics Pub Date : 2022-08-01 DOI: 10.1016/j.mcpro.2022.100383
{"title":"Post-Deconvolution MS/MS Spectra Extraction with Data-Independent Acquisition for Comprehensive Profiling of Urinary Conjugated Metabolome","authors":"","doi":"10.1016/j.mcpro.2022.100383","DOIUrl":"https://doi.org/10.1016/j.mcpro.2022.100383","url":null,"abstract":"","PeriodicalId":325853,"journal":{"name":"Molecular & Cellular Proteomics","volume":"37 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128831576","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
An AI-driven leap forward in peptide identification through deconvolution of chimeric spectra 通过嵌合光谱的反卷积，人工智能驱动的多肽鉴定的飞跃
Molecular & Cellular Proteomics Pub Date : 2022-08-01 DOI: 10.1016/j.mcpro.2022.100332
Martin Frejno, D. P. Zolg, Tobias Schmidt, Siegfried Gessulat, Michael Graber, F. Seefried, Magnus Rathke-Kuhnert, Samia Ben Fredj, Patroklos, Samaras, Kai Fritzemeier, Frank Berg, Waqas Nasir, D. Horn, B. Delanghe, Christoph Henrich, B. Kuster, Mathias Wilhelm, Hannah Boekweg
{"title":"An AI-driven leap forward in peptide identification through deconvolution of chimeric spectra","authors":"Martin Frejno, D. P. Zolg, Tobias Schmidt, Siegfried Gessulat, Michael Graber, F. Seefried, Magnus Rathke-Kuhnert, Samia Ben Fredj, Patroklos, Samaras, Kai Fritzemeier, Frank Berg, Waqas Nasir, D. Horn, B. Delanghe, Christoph Henrich, B. Kuster, Mathias Wilhelm, Hannah Boekweg","doi":"10.1016/j.mcpro.2022.100332","DOIUrl":"https://doi.org/10.1016/j.mcpro.2022.100332","url":null,"abstract":"","PeriodicalId":325853,"journal":{"name":"Molecular & Cellular Proteomics","volume":"123 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"122483308","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Computational challenges of identification and quantification algorithms in single-cell proteomic data. 单细胞蛋白质组学数据中鉴定和定量算法的计算挑战。
Molecular & Cellular Proteomics Pub Date : 2022-08-01 DOI: 10.1016/j.mcpro.2022.100333
{"title":"Computational challenges of identification and quantification algorithms in single-cell proteomic data.","authors":"","doi":"10.1016/j.mcpro.2022.100333","DOIUrl":"https://doi.org/10.1016/j.mcpro.2022.100333","url":null,"abstract":"","PeriodicalId":325853,"journal":{"name":"Molecular & Cellular Proteomics","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115159605","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Integrative Structural Biology to Understand Biological Complexity 理解生物复杂性的综合结构生物学
Molecular & Cellular Proteomics Pub Date : 2022-08-01 DOI: 10.1016/j.mcpro.2022.100308
{"title":"Integrative Structural Biology to Understand Biological Complexity","authors":"","doi":"10.1016/j.mcpro.2022.100308","DOIUrl":"https://doi.org/10.1016/j.mcpro.2022.100308","url":null,"abstract":"","PeriodicalId":325853,"journal":{"name":"Molecular & Cellular Proteomics","volume":"55 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115250449","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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