Mengyuan Yang , Jie Xu , Mengmeng Zhao , Jiaxin Zhou , Yifan Hou , Long Zhao , Fang Liu , Yinjiu Huang
{"title":"Synthesis of quinazoline derivatives and their in vitro inhibition activity against MDA-MB-231 cells and A549 cells","authors":"Mengyuan Yang , Jie Xu , Mengmeng Zhao , Jiaxin Zhou , Yifan Hou , Long Zhao , Fang Liu , Yinjiu Huang","doi":"10.1016/j.bmcl.2025.130308","DOIUrl":"10.1016/j.bmcl.2025.130308","url":null,"abstract":"<div><div>A series of novel 4-aniline quinazoline derivatives (<strong>Y1-Y26</strong>) were synthesised from 2-amino-6-nitrobenzoic acid based on the quinazoline parent nucleus via trifluoroacetylation, ring-closing and chlorination; The CCK-8 method was used to assess the in vitro inhibitory activities of the resulting compounds against two distinct cell lines: breast cancer cells (MDA-MB-231) and non-small cell lung cancer (A549). The results demonstrated that most of the compounds exhibited in vitro proliferation inhibitory activity against both MDA-MB-231 and A549 cells. Among these, compound <strong>Y22</strong> exhibited the strongest inhibitory effect on MDA-MB-231 cells (IC<sub>50</sub> = 4.53 μM); As the concentration of <strong>Y22</strong> increased, the inhibition of cell proliferation was enhanced, and the cells gradually shrank and underwent morphological changes consistent with apoptosis; Transwell assay demonstrated that the compound <strong>Y22</strong> exhibited a substantial inhibitory effect on cell migration; Flow cytometry revealed a substantial augmentation in apoptosis with elevated compound concentrations; Western blot analysis indicated that <strong>Y22</strong> may exert in vitro antitumour activity by decreasing the expression of the anti-apoptotic protein Bcl-2 while increasing the expression of the pro-apoptotic protein Bax. The findings of these studies suggest that <strong>Y22</strong> can potentially plays a significant role in the design and synthesis of antitumour drugs.</div></div>","PeriodicalId":256,"journal":{"name":"Bioorganic & Medicinal Chemistry Letters","volume":"127 ","pages":"Article 130308"},"PeriodicalIF":2.5,"publicationDate":"2025-06-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144293043","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jia-Ning Gu , Feng Liu , Yun-Song Song , Hai-Feng Ding , Xiang-Yang Feng , Xian-Li Ma , Yang-Qing Huang , Ye Zhang
{"title":"Design, synthesis and antitumor evaluation of a novel nectin-4 targeting bicyclic toxin conjugate","authors":"Jia-Ning Gu , Feng Liu , Yun-Song Song , Hai-Feng Ding , Xiang-Yang Feng , Xian-Li Ma , Yang-Qing Huang , Ye Zhang","doi":"10.1016/j.bmcl.2025.130306","DOIUrl":"10.1016/j.bmcl.2025.130306","url":null,"abstract":"<div><div>A Nectin-4 targeting bicyclic toxin conjugate (BTC) <strong>BGC1614</strong> was designed, synthesized and evaluated as an antitumor agent. Fluorescence-activated cell sorting (FACS) assay results indicated that <strong>BGC1614</strong> exhibited selective and strong binding to Nectin-4-expressing cells in comparison with the clinical drug <strong>BT8009</strong>. Surface plasmon resonance (SPR) test showed that the equilibrium dissociation constants (K<sub>D</sub>) for <strong>BT8009</strong> and <strong>BGC1614</strong> were 3.219 ± 0.412 × 10<sup>−7</sup> M and 3.859 ± 0.287 × 10<sup>−7</sup> M, respectively, indicating that <strong>BGC1614</strong> exhibited similar target engagement capability with Nectin-4 compared to <strong>BT8009</strong>. In vivo antiproliferative activity assay results showed that <strong>BGC1614</strong> (0.12 μM/kg) exhibited better antiproliferative activity than <strong>BT8009</strong> (0.12 μM/kg, inhibition rate (IR) 87.6 %) in PC-3 (human prostate cancer cell) model with IR of 96.3 %, while <strong>BGC1614</strong> (0.36 μM/kg) displayed similar inhibition with <strong>BT8009</strong> (0.36 μM/kg, IR 72.7 %) in N87 (human gastric cancer cell) model with IR of 70.1 %, demonstrating that <strong>BGC1614</strong> exhibited better antitumor effect in the same molar concentration in PC-3 model. In addition, <strong>BGC1614</strong> was well-tolerated in efficacious doses in the nude model assays, while the pharmacokinetic (PK) parameters of <strong>BGC1614</strong> were comparable to that of <strong>BT8009</strong>.</div></div>","PeriodicalId":256,"journal":{"name":"Bioorganic & Medicinal Chemistry Letters","volume":"127 ","pages":"Article 130306"},"PeriodicalIF":2.5,"publicationDate":"2025-06-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144281855","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Fighting Alzheimer's naturally: Peptides as multitarget drug leads","authors":"Roque Spinelli , Ivan Sanchís , Alvaro Siano","doi":"10.1016/j.bmcl.2025.130305","DOIUrl":"10.1016/j.bmcl.2025.130305","url":null,"abstract":"<div><div>In this review, we provide a comprehensive analysis of the role of natural peptides—particularly those derived from amphibian skin secretions—as multitarget-directed ligands (MTDLs) in the context of Alzheimer's disease (AD). Given the multifactorial nature of AD, where cholinergic dysfunction intersects with amyloid-β aggregation, tau hyperphosphorylation, oxidative stress, metal ion imbalance, and monoamine oxidase dysregulation, therapeutic strategies capable of modulating several pathological pathways simultaneously are urgently needed. We begin by revisiting the cholinergic hypothesis and its molecular and structural underpinnings, emphasizing the relevance of key binding sites such as the catalytic active site (CAS) and the peripheral anionic site (PAS) of cholinesterases. The central axis of this review lies in the exploration of naturally occurring peptides that have demonstrated dual or multiple activities against AD-related targets. We highlight our group's pioneering work on amphibian-derived peptides such as Hp-1971, Hp-1935, and BcI-1003, which exhibit non-competitive inhibition of AChE and BChE, MAO-B modulation, and antioxidant properties. Furthermore, we describe additional peptide-rich extracts and bioactive sequences from various amphibians and other animal or plant sources, expanding the landscape of natural molecules with neuroprotective potential. We also delve into peptide modification strategies—such as amino acid substitution, cyclization, D-amino acid incorporation, and terminal/side-chain functionalization—that have been employed to enhance peptide stability, blood-brain barrier permeability, and target affinity. These strategies not only improve the pharmacokinetic profiles of native peptides but also open the door for the rational design of next-generation peptide therapeutics. Overall, this review underscores the vast potential of natural peptides as scaffolds for the development of multifunctional agents capable of intervening in the complex cascade of Alzheimer's pathology.</div></div>","PeriodicalId":256,"journal":{"name":"Bioorganic & Medicinal Chemistry Letters","volume":"127 ","pages":"Article 130305"},"PeriodicalIF":2.5,"publicationDate":"2025-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144264981","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Yoshihisa Hirota , Mika Okamoto , Masanori Baba , Yoshitomo Suhara
{"title":"Potential of fat-soluble vitamins as a platform for antiviral drug development","authors":"Yoshihisa Hirota , Mika Okamoto , Masanori Baba , Yoshitomo Suhara","doi":"10.1016/j.bmcl.2025.130292","DOIUrl":"10.1016/j.bmcl.2025.130292","url":null,"abstract":"<div><div>Fat-soluble vitamins, including vitamins A, D, E, and K, exhibit antioxidative, anti-inflammatory, and immunomodulatory effects, making them promising candidates for antiviral drug development. This review highlights their structural features, biological roles, and antiviral potential. Vitamin A derivatives modulate immunity and inhibit viral replication, including SARS-CoV-2. Vitamin D analogs enhance immune responses and target viral enzymes, while vitamin E derivatives reduce oxidative stress and may directly inhibit viral replication. Emerging research on vitamin K derivatives suggests potential antiviral applications. These findings underscore the potential of fat-soluble vitamins as innovative antiviral agents, warranting further investigation to optimize efficacy and clinical use.</div></div>","PeriodicalId":256,"journal":{"name":"Bioorganic & Medicinal Chemistry Letters","volume":"127 ","pages":"Article 130292"},"PeriodicalIF":2.5,"publicationDate":"2025-06-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144239935","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Chengwei Wu , Mengdie Ou , Bo Qin , Shuo Wang , Peng Li , Sheng Cui , Haihong Huang , Gang Li
{"title":"Discovery of 3-phenyl-1H-5-pyrazolylamides as PLpro inhibitors through virtual screening and structure optimization","authors":"Chengwei Wu , Mengdie Ou , Bo Qin , Shuo Wang , Peng Li , Sheng Cui , Haihong Huang , Gang Li","doi":"10.1016/j.bmcl.2025.130293","DOIUrl":"10.1016/j.bmcl.2025.130293","url":null,"abstract":"<div><div>The papain-like protease (PLpro) of SARS-CoV-2 has been identified as a pivotal enzyme in viral replication, indicating it a promising target for drug discovery. Utilizing a virtual screening strategy, compound <strong>1</strong> with the <em>N</em>-(3-(5-amino-1<em>H</em>-pyrazol-3-yl)phenyl) benzenesulfonamide scaffold was discovered as a hit targeting PLpro. Structural modification from virtually screened hit <strong>1</strong> led to the development of a series of substituted 3-phenyl-1<em>H</em>-5-pyrazolylamide derivatives. Notably, compounds <strong>14h</strong> and <strong>14e</strong> exhibited improved PLpro inhibitory activity (IC<sub>50</sub> = 14.2 μM and 12.0 μM, respectively) and low cytotoxicity. Further biological evaluation revealed that compound <strong>14e</strong> with a thiophene aldehyde group displayed potent binding activity (<em>K</em><sub>D</sub> = 1.86 μM). This 3-phenyl-1<em>H</em>-5-pyrazolylamide scaffold offers significant potential for further development as a novel class of PLpro inhibitors.</div></div>","PeriodicalId":256,"journal":{"name":"Bioorganic & Medicinal Chemistry Letters","volume":"127 ","pages":"Article 130293"},"PeriodicalIF":2.5,"publicationDate":"2025-06-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144232817","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Simin Wang , Jiannan Zhao , Takashi Nakai , Suyi Chen , Yongtao Duan , Ruijun Li , Chuanjun Song , Yongfang Yao
{"title":"Discovery of a novel CD39 inhibitor by DNA-encoded library screening","authors":"Simin Wang , Jiannan Zhao , Takashi Nakai , Suyi Chen , Yongtao Duan , Ruijun Li , Chuanjun Song , Yongfang Yao","doi":"10.1016/j.bmcl.2025.130294","DOIUrl":"10.1016/j.bmcl.2025.130294","url":null,"abstract":"<div><div>The ATP-adenosine pathway, as a key regulator of adaptive immunity, can regulate tumor growth and proliferation, which is an important direction of anti-tumor immunity research. As a rate-limiting extracellular nucleotidase in eATP hydrolysis, CD39 is a promising target for anticancer therapy. In this study, we discovered a novel CD39 small molecule inhibitor (compound <strong>338</strong>) by DNA-encoded library (DEL) technology. Subsequently, compound <strong>338</strong> was synthesized and tested with promising inhibitory effect which IC<sub>50</sub> value was 68.7 nM against CD39. It also showed moderate anti-proliferative effects on tumor cells and low toxicity on normal cell lines. Meanwhile, molecular docking and SPR results demonstrated that <strong>338</strong> had a robust binding interaction with CD39. The druggability of <strong>338</strong> was predicted. In conclusion, the novel compound <strong>338</strong> showed strong CD39 inhibitory activity and good druggability, which can be used as a potential anti-tumor therapeutic agent and can be optimized in further studies.</div></div>","PeriodicalId":256,"journal":{"name":"Bioorganic & Medicinal Chemistry Letters","volume":"127 ","pages":"Article 130294"},"PeriodicalIF":2.5,"publicationDate":"2025-06-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144221760","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Xinrong Tian, Ken Newlander, Louis LaFrance, James Mack, James Brackley, Charles McHugh, Yanan He, Neil Johnson, Maggie Truong, Melissa B. Pappalardi, Michael T. McCabe, Steven D. Knight
{"title":"Asymmetric synthesis of potent and orally bioavailable thiophene-based EZH2 inhibitors","authors":"Xinrong Tian, Ken Newlander, Louis LaFrance, James Mack, James Brackley, Charles McHugh, Yanan He, Neil Johnson, Maggie Truong, Melissa B. Pappalardi, Michael T. McCabe, Steven D. Knight","doi":"10.1016/j.bmcl.2025.130291","DOIUrl":"10.1016/j.bmcl.2025.130291","url":null,"abstract":"<div><div>An efficient synthesis of 6,7-dihydrothieno[3,2-<em>c</em>]pyridin-4(5H)-one bearing 3-methyl-2-(<em>R</em>)-(1-(piperidin-4-yl)ethyl) substituents (<strong>3</strong>), a pivotal intermediate for the development of EZH2 inhibitors, is described. The key steps include a highly enantioselective iridium-catalyzed hydrogenation of a 1,1-disubstituted alkene, cyanomethylation of a bromo thiophene using the Suzuki coupling-isoxazole fragmentation protocol, and subsequent tandem nitrile reduction/lactamization. Potent and orally bioavailable EZH2 inhibitors, such as <strong>25</strong> and <strong>26</strong>, were discovered from <strong>3</strong> by optimizing substitutions at the piperidine ring.</div></div>","PeriodicalId":256,"journal":{"name":"Bioorganic & Medicinal Chemistry Letters","volume":"127 ","pages":"Article 130291"},"PeriodicalIF":2.5,"publicationDate":"2025-05-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144197908","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Emil Salim , Hilkatul Ilmi , Aty Widyawaruyanti , Natsuhisa Oka
{"title":"Design and synthesis of hydroxychloroquine-sugar conjugates as promising antimalarial agents","authors":"Emil Salim , Hilkatul Ilmi , Aty Widyawaruyanti , Natsuhisa Oka","doi":"10.1016/j.bmcl.2025.130289","DOIUrl":"10.1016/j.bmcl.2025.130289","url":null,"abstract":"<div><div>Novel hydroxychloroquine (HCQ)-sugar conjugates were evaluated for their antimalarial activity against chloroquine-sensitive (<em>Pf</em>3D7) and multi-resistant (<em>Pf</em>Dd2) strains of <em>Plasmodium falciparum</em>, cytotoxicity, and hydrolytic stability. HCQ-galactose conjugate with a 1,2-orthioester linkage exhibited the highest activity against <em>Pf</em>3D7 (IC<sub>50</sub> value of 0.018 ± 0.001 μg/mL). Per-<em>O</em>-acetyl-β-<span>d</span>-glucopyranosyl-HCQ exhibited the highest activity against <em>Pf</em>Dd2 (IC<sub>50</sub> = 0.20 ± 0.02 μg/mL), while also maintaining comparable activity against <em>Pf</em>3D7. Orthoester-linked conjugates were gradually hydrolyzed in human serum, resulting in HCQ release, which may contribute to their high activity. Glycosidic bond-linked conjugates showed high hydrolytic stability, retaining a certain level of activity, possibly without releasing HCQ. Toxicity assessments using the BHK21 cell line indicated significantly lower cytotoxicity for all HCQ-sugar conjugates compared to HCQ.</div></div>","PeriodicalId":256,"journal":{"name":"Bioorganic & Medicinal Chemistry Letters","volume":"125 ","pages":"Article 130289"},"PeriodicalIF":2.5,"publicationDate":"2025-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144189981","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Synthesis of substrate peptides incorporating non-natural amino acids and screening study using BACE1","authors":"Shinji Katsuoka, Ryo Watanabe, Yuma Uchida, Masaki Midorikawa, Reo Yamada, Taeko Kakizawa","doi":"10.1016/j.bmcl.2025.130290","DOIUrl":"10.1016/j.bmcl.2025.130290","url":null,"abstract":"<div><div>Peptide library screening is used to detect optimal sequences for enzymatic cleavage; moreover, the data obtained through this screening are useful for the establishment of a fast screening system and designing of substrate-based enzyme inhibitors. In this study, peptide libraries were prepared and digested with the beta-site amyloid precursor protein cleaving enzyme (BACE1). BACE1 has been used as a target enzyme for drug development against Alzheimer's disease (AD). The library sequences were derived from our previous screening study based on amyloid-beta precursor protein (APP) substrates. Then, newly selected non-natural amino acids were incorporated into several positions on these sequences. After digestion with BACE1, the reaction mixtures were analyzed with high-performance liquid chromatography followed by mass spectrometry to identify the peptides undergoing efficient cleavage. The data obtained from this study can be used for designing drugs against AD in the future.</div></div>","PeriodicalId":256,"journal":{"name":"Bioorganic & Medicinal Chemistry Letters","volume":"127 ","pages":"Article 130290"},"PeriodicalIF":2.5,"publicationDate":"2025-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144186118","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Heng Wu , Liangfeng Zhang , Xuehao Lu , Yuting Han , Zan Wang , Yanqiu Meng
{"title":"Design, synthesis, and activity evaluation of Asiatic acid derivatives as Survivin inhibitors","authors":"Heng Wu , Liangfeng Zhang , Xuehao Lu , Yuting Han , Zan Wang , Yanqiu Meng","doi":"10.1016/j.bmcl.2025.130288","DOIUrl":"10.1016/j.bmcl.2025.130288","url":null,"abstract":"<div><div>Asiatic acid, a triterpenoid isolated from <em>Centella asiatica</em>, putatively functions through inhibition of Survivin—a member of the Inhibitor of Apoptosis Protein (IAP) family that modulates tumor survival. Taking <em>GDP366</em> and <em>LQZ-7I</em>, two Survivin inhibitors of preclinical stage, as reference compounds, two classes of novel Asiatic acid derivatives (24 compounds in total) were designed and synthesized. These compounds demonstrated favorable docking capabilities and binding modes with the three-dimensional crystal structure of Survivin. The MTT assay demonstrated that these compounds exhibited anti-proliferative effects against <em>A549</em> and <em>MCF-7</em> cell lines, with compounds <strong>I</strong><sub><strong>3</strong></sub>, <strong>I</strong><sub><strong>9</strong></sub>, <strong>II</strong><sub><strong>3</strong></sub>, <strong>II</strong><sub><strong>5</strong></sub>, and <strong>II</strong><sub><strong>12</strong></sub> showing potency comparable to the positive control drug. Furthermore, Western blot analysis revealed that compound <strong>II</strong><sub><strong>3</strong></sub> dose-dependently reduced Survivin protein levels. Compound <strong>II</strong><sub><strong>3</strong></sub> provides a valuable reference for further research on Survivin inhibitors.</div></div>","PeriodicalId":256,"journal":{"name":"Bioorganic & Medicinal Chemistry Letters","volume":"125 ","pages":"Article 130288"},"PeriodicalIF":2.5,"publicationDate":"2025-05-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144141019","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}