2009 First International Confernce on Advances in Databases, Knowledge, and Data Applications最新文献_第3页

An Extension of XQuery for Graph Analysis of Biological Pathways 生物通路图分析中XQuery的扩展

2009 First International Confernce on Advances in Databases, Knowledge, and Data Applications Pub Date : 2009-03-01 DOI: 10.1109/DBKDA.2009.16

L. Strömbäck, S. Schmidt

{"title":"An Extension of XQuery for Graph Analysis of Biological Pathways","authors":"L. Strömbäck, S. Schmidt","doi":"10.1109/DBKDA.2009.16","DOIUrl":"https://doi.org/10.1109/DBKDA.2009.16","url":null,"abstract":"The vast quantity of scientific data produced in life sciences demands the use of sophisticated storage and analysis techniques. In particular, for biological pathways graph analysis plays an important role and data is commonly available in XML-based formats. Thus, there is a growing need to make analysis capabilities available through query languages for XML. This paper presents an approach to extend XQuery for graph analysis with focus on data for biological pathways. A graph model is introduced within the XQuery environment. New built-in functions define the available operations on the graph model. XQuery expressions can be utilized to populate graphs with data and execute graph algorithms. Graph data and results of algorithms can be accessed in an XML representation for further processing. In addition, a reference mechanism can be used to preserve associations from graph data to the original XML data. The approach has been implemented as an extension to exist. First evaluations of the implementation show that the introduced approach is practical and efficient for reaction networks with several thousand vertices and edges.","PeriodicalId":231150,"journal":{"name":"2009 First International Confernce on Advances in Databases, Knowledge, and Data Applications","volume":"11 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2009-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116798797","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 7

Multi-level Topological Relations of the Spatial Reasoning System RCC-8 空间推理系统RCC-8的多级拓扑关系

2009 First International Confernce on Advances in Databases, Knowledge, and Data Applications Pub Date : 2009-03-01 DOI: 10.1109/DBKDA.2009.13

A. Alboody, F. Sèdes, J. Inglada

{"title":"Multi-level Topological Relations of the Spatial Reasoning System RCC-8","authors":"A. Alboody, F. Sèdes, J. Inglada","doi":"10.1109/DBKDA.2009.13","DOIUrl":"https://doi.org/10.1109/DBKDA.2009.13","url":null,"abstract":"Queries in geospatial databases, such as Geographic Information Systems (GIS), image databases, are often based upon the relations among spatial objects. Spatial relations are the basis of many queries that GIS perform such as the topological relations. The general description of region-region topological relations in details is still an unsolved issue although much effort has been done.The eight basic topological relations between two spatial regions are written without any details in the classical form of the spatial reasoning system RCC-8: DC, EC, EQ, PO, TPP, TPPi, NTPP and NTPPi. In some applications, there are needs to describe in details these relations. In order to extract all the necessary details at all levels and to differentiate between relations of the same kind, multi-level topological relations of RCC-8 are introduced by using two concepts: the Separation Number and the Types of Spatial Elements (Points and Lines) of the Boundary-Boundary Intersection Spatial Set (BBISS). These two concepts are very important to detail these relations.In our study, the major contribution is multi-level topological relations of RCC-8. We focus our work on the four relations EC, PO, TPP and TPPi which can be detailed at two additional levels. First, these four relations are written and described in general detailed forms by the concept of Separation Number. Secondly, the same relations are expressed in other general forms by the concept of Types of Spatial Elements. Finally, examples are provided to illustrate the determination of these relations presented in this paper.","PeriodicalId":231150,"journal":{"name":"2009 First International Confernce on Advances in Databases, Knowledge, and Data Applications","volume":"26 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2009-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115480399","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 7

Visualization and Integration of Databases Using Self-Organizing Map 基于自组织地图的数据库可视化与集成

2009 First International Confernce on Advances in Databases, Knowledge, and Data Applications Pub Date : 2009-03-01 DOI: 10.1109/DBKDA.2009.30

F. Bourennani, K. Pu, Ying Zhu

引用次数: 10

Web Based Medical Expert System with a Self Training Heuristic Rule Induction Algorithm 基于Web的自训练启发式规则归纳算法医学专家系统

2009 First International Confernce on Advances in Databases, Knowledge, and Data Applications Pub Date : 2009-03-01 DOI: 10.1109/DBKDA.2009.21

I. Chorbev, D. Mihajlov, I. Jolevski

引用次数: 22

Research on Cost-Sensitive Communication Models over Distributed Data Streams Processing 分布式数据流处理中成本敏感通信模型的研究

2009 First International Confernce on Advances in Databases, Knowledge, and Data Applications Pub Date : 2009-03-01 DOI: 10.1109/DBKDA.2009.19

Aiping Li, Li Tian, Yan Jia, Shuqiang Yang

引用次数: 0