Plant Genetic Resources最新文献

{"title":"Insights into historic and genetic relationships of diverse common lilac (Syringa vulgaris) genotypes based on whole-genome profiling","authors":"Helena Korpelainen, Leena Lindén","doi":"10.1017/s1479262123001053","DOIUrl":"https://doi.org/10.1017/s1479262123001053","url":null,"abstract":"<p>Common lilac (<span>Syringa vulgaris</span> L.) is a popular landscaping plant. Our aim was to obtain a large set of single nucleotide polymorphism (SNP) markers, to reveal the precise identities of the investigated <span>S. vulgaris</span> accessions, and to discover genetic relationships among them. The studied plant material included local Finnish, previously unidentified accessions, known reference cultivars, and so-called historical accessions i.e., old shrubs growing in historic cultural landscapes. We intended to verify cultivar names for some valuable local common lilac accessions and to provide insights into the history of common lilac cultivation in Finland. In the analyses, we used a set of 15,007 SNP markers. First, polymorphic information contents were calculated (mean 0.190, range 0.012–0.500 per marker). Then, to investigate genetic relationships among genotypes, a phylogenetic tree was constructed, and a principal coordinate analysis was conducted. A Bayesian analysis of population structure was performed to determine the number and distribution of genetic clusters among samples. Genetic marker data combined with existing historical and phenotypic knowledge revealed novel information on the unidentified cultivars and on the genetic relationships among studied accessions and solved the arrival and early history of common lilac in Finland. Overall, such comprehensive genomic characterization and deep understanding of genetic relationships of <span>S. vulgaris</span> can be used when utilizing present cultivars and developing new ones in future breeding programs.</p>","PeriodicalId":20188,"journal":{"name":"Plant Genetic Resources","volume":"21 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-12-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138821353","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Diversity analyses of chickpea (Cicer arietinum L.) through agro-morphological traits","authors":"Nasser Eddine Dehbaoui, Laurent Gentzbittel, Jean Jacques Drevon, Mohamed Lazali","doi":"10.1017/s1479262123001065","DOIUrl":"https://doi.org/10.1017/s1479262123001065","url":null,"abstract":"<p>The limited genetic resource of chickpea (<span>Cicer arietinum</span> L.) is one of the most critical issue impeding its improvement and production. Collection and characterization of chickpea for agronomic traits is prerequisite to build a successful breeding programme through expanding chickpea's genepool to fulfil the needs of farmers and breeders, such as grain size and yield which supply food to a world rising population. To reach such an objective, numerous collection missions were carried out in Algeria, covering the northern agro-ecological environments, this allows us to gather 56 national and international genotypes that report a phenotypic variability and may provide a valuable diversity of useful features. Characterization experiments of 19 agro-morphological traits were set up at the Technical Institute of Field Crops over two successive seasons 2020 and 2021. All traits were statistically significant and the cluster analysis classified the genotypes into three major group, where local and improved accessions revealed an interesting outcome in terms of seed yield and resistance to Ascochyta blight. In general, the current study's findings clearly demonstrated that plant and seed morphological characteristics could be used to distinguish and identify chickpea genotypes. More often, it might participate as a source of variation in breeding programmes to meet the desirable improvement targets.</p>","PeriodicalId":20188,"journal":{"name":"Plant Genetic Resources","volume":"4 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-12-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138817234","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Evaluation of indigenous and exotic soybean accessions for yield, resistance to frog-eye leaf spot and yellow mosaic virus diseases","authors":"Anuradha Bhartiya, Vangala Rajesh, J. P. Aditya, Jeevan B., Sanjay Gupta, Lakshmi Kant, Hemlata Joshi, S. P. Mehtre, H. N. Devi, S. Jaybhay, M. K. Karnwal, Vennampally Nataraj, Nita Khandekar","doi":"10.1017/s1479262123000941","DOIUrl":"https://doi.org/10.1017/s1479262123000941","url":null,"abstract":"Soybean is a major source of vegetable oil and protein worldwide. Globally, India is among the top five producers where soybean is a major oilseed grown under diverse agro-climatic conditions by small and marginal farmers. The present study aims to identify soybean varieties with higher yield levels, resistance to pestdiseases and adaptability to climatic fluctuations. One hundred and twenty-five (125) indigenous and exotic soybean germplasm accessions and five checks were evaluated and characterized for eight agro-morphological traits at five testing locations and also screened for frog-eye leaf spot (FLS) and yellow mosaic virus (YMV) diseases under hot-spot locations during the rainy season. A wide range of variability was observed among accessions for days to 50% flowering (39–59), plant height (41–111 cm), number of nodes/plant (10–30), pod clusters/plant (14–39), number of pods/plant (40–102), days to maturity (96–115), grain yield/plant (4.89–16.54 g) and 100-seed weight (6.02–13.72 g). Among various traits, 100-seed weight (0.45), number of pods/plant (0.60) and number of pod clusters/plant (0.38) were found to be major yield-contributing traits as they exhibited highly significant correlation with grain yield/plant. Principal components PCI and PCII with eigen value &gt;1 accounted for 42.66 and 27.08% of the total variation, respectively. Accessions G24 (EC 393222) from Taiwan and G40 (IMP-1) from the USA belonging to cluster IV were found promising for multiple yield traits and JS 20–38 from cluster III for earliness as per cluster analysis. GGE biplot average environment coordination (AEC) view revealed that the accessions <jats:italic>viz</jats:italic>., G11 (EC 333872), G2 (EC 251506) and G47 (TNAU-S-55) were the best performing stable genotypes in terms of grain yield/plant across locations. Twelve accessions had a high level of resistance against both FLS and YMV diseases under natural hot-spot conditions which can be utilized as promising donors in the soybean breeding programme.","PeriodicalId":20188,"journal":{"name":"Plant Genetic Resources","volume":"17 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-12-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138689445","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Morphometric diversity of some Nigerian accessions of Bambara groundnut (Vigna subterranea)","authors":"Opeyemi Tunde Osundare, Oluwole Benjamin Akinyele, Alexander C. Odiyi, Michael Abberton, Olaniyi Ajewole Oyatomi, Rajneesh Paliwal","doi":"10.1017/s1479262123001028","DOIUrl":"https://doi.org/10.1017/s1479262123001028","url":null,"abstract":"<p>This study evaluated the morphological diversity of some Nigerian accessions of Bambara groundnut. Field experiments were conducted in Nigeria in two locations and the phenotypic variation of Bambara groundnut accessions evaluated in 3 years (2017–2020) using a randomized complete block design. Twenty-eight quantitative and 10 qualitative traits were observed. Twenty-three out of the 28 quantitative morphological traits showed significant differences. TVSu-589 (28.85) and TVSu-670 (28.57) had the highest plant height; TVSu-572 (121.52), TVSu-271 (113.10) and TVSu-336 (104.15) had the highest 100-seed weight. Genetic variations were also observed in seed colour, terminal leaflet shape, petiole colour and eye pattern. Principal component analysis showed PC1 constituting 23.36% and PC2 constituting 15.76% of the total variation, while the first eight principal components with eigenvalues ≥1 revealed 77.28% of the total variation. Cluster analysis grouped the accessions into four groups. Based on yield data in this study, accessions TVSu-594, TVSu-350, TVSu-336, TVSu-1242, TVSu-129, TVSu-14, TVSu-179, TVSu-2100, TVSu-261 and TVSu-589 were the best for yield and are recommended for further evaluation to improve yield. This study showed that a wide range of diversity exists in Bambara groundnut of Nigerian origin that could be useful for further utilization of genetic resources and improvement.</p>","PeriodicalId":20188,"journal":{"name":"Plant Genetic Resources","volume":"69 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-12-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138581843","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Discovery of male sterility from an interspecific cross between Jatropha curcas and J. integerrima","authors":"Premroedee Phithakhongsa, Patcharin Tanya, Anuruck Arunyanark, Chamnanr Phetcharat, Narathid Muakrong, Peerasak Srinives","doi":"10.1017/s1479262123001016","DOIUrl":"https://doi.org/10.1017/s1479262123001016","url":null,"abstract":"<p>Jatropha (<span>Jatropha curcas</span> L.) is a shrub that produces non-food oil and can potentially be used for biodiesel production. An interspecific cross was made between <span>J. curcas</span> and peregrina (<span>J. integerrima</span>) to increase genetic diversity. Interestingly, male sterility was observed in the F<span>2</span> population. Out of the 445 F<span>2</span> plants, five, namely, ms-1 to ms-5, exhibited male sterility, characterized by unopened and distorted stamens without pollen. The parental jatropha, peregrina, F<span>1</span> and F<span>2</span> had fertile pollen grain rates of 90.61%, 96.39%, 81.46% and 75.39%, respectively. To verify the fertility of the pistils in the male sterile plants, they were pollinated through selfing, opening and hand crossing with fertile pollen. All of the ms lines experienced seed abortion with or without fruit, except for ‘ms-5’, which produced seed.</p>","PeriodicalId":20188,"journal":{"name":"Plant Genetic Resources","volume":"92 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138567507","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Evaluation of garlic genotypes for yield performance and stability using GGE biplot analysis and genotype by environment interaction","authors":"Fekadu Gebretensay Mengistu, Gizachew Atinafu Mossie, Getachew Tabor Fita","doi":"10.1017/s1479262123000904","DOIUrl":"https://doi.org/10.1017/s1479262123000904","url":null,"abstract":"<p>In Ethiopia, the low productivity of garlic is largely due to a shortage of high yielding and stable varieties. To address this issue, thirteen garlic genotypes were evaluated for yield stability and performance across six different environments in central and southeast Ethiopia. The genotypes were analysed using Additive Main effects and Multiplicative Interaction (AMMI) and genotype-by-environment interaction (G × E) methods. Results showed that the genotypes differed significantly for bulb yield performance and morphological traits, with G-020/03 and G-054/03 producing the highest bulb yield with 25.39% and 18.39% yield advantages over the check variety, Kuriftu, respectively. Furthermore, G-020/03 demonstrated better yield stability across most environments, while G-054/03 exhibited specific adaptability. GGE biplot analysis confirmed that these two genotypes were among the three winning genotypes in terms of yield performance and relative stability. Therefore, G-020/03 and G-054/03 have been selected as candidate varieties for release, potentially improving garlic productivity in Ethiopia.</p>","PeriodicalId":20188,"journal":{"name":"Plant Genetic Resources","volume":"79 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-12-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138546147","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Fine mapping and discovery of candidate genes for rind trait in watermelon","authors":"Zhi Qiang Wang, Huiying Du, Cheng Li","doi":"10.1017/s1479262123000813","DOIUrl":"https://doi.org/10.1017/s1479262123000813","url":null,"abstract":"Fine mapping and discovery of watermelon rind trait candidate genes are of great significance for modern watermelon breeding and development. In this study, we used the high-resolution genetic mapping and genome-wide genetic variation detection technology, combined with genome survey and sequencing technology, to locate and discover the candidate genes for rind traits of star watermelon varieties ‘Su XuanBai’ and ‘SHLX<jats:sub>21</jats:sub>’. Firstly, we identified a total of eight quantitative trait loci (QTLs) related to watermelon rind traits on chromosome 6. Secondly, a total of 208,240 single nucleotide polymorphisms and 75,345 small Indels (insertions/deletions) were detected in the two parents by high-coverage re-sequencing, respectively. Based on the genetic variation of the two parents and combined with Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis using the planta database, the QTL region was reduced to 0.02 Mb. Finally, we identified the six potential regulatory factors for watermelon rind traits using real-time quantitative PCR. In conclusion, our results revealed the fine localization of candidate genes for watermelon rind traits and the successful discovery of candidate genes for regulating watermelon rind traits, which is of importance for watermelon rind traits and breeding-improved watermelon varieties.","PeriodicalId":20188,"journal":{"name":"Plant Genetic Resources","volume":"5 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138530722","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Participatory tree selection and fruit morphological characterization of Phoebe cooperiana (U.N Kanjilal ex A. Das) in the Eastern Himalayas of India","authors":"Jasmine Pabin, Nicolee Lyngdoh, Shivani Dobhal, Kalidas Upadhyaya, Mongjam Bishwapati Devi","doi":"10.1017/s1479262123000989","DOIUrl":"https://doi.org/10.1017/s1479262123000989","url":null,"abstract":"Selection of desirable phenotypes and characterization of variability in economically important traits are essential for domestication of indigenous fruit trees (IFTs). Currently, participatory tree selection is a widely accepted approach in IFT domestication wherein farmers' knowledge and preferences are included in tree selection processes. In Arunachal Pradesh, India, fruits of <jats:italic>Phoebe cooperiana</jats:italic> are extensively consumed by people and traded across the state. In this study, we employed a selection index to screen trees for superior fruit traits from a base population of 45 farmer-identified trees of <jats:italic>P. cooperiana</jats:italic> in Arunachal Pradesh. Based on fruit diameter length ratio, pulp fruit ratio and yield, 19 trees were selected for superior fruit traits. The per cent improvement for 10 fruit and seed traits ranged from 0.16 to 14.56% compared to the base population. Significant variation for all fruit and seed parameters was observed among the 19 trees with coefficient of variation values ranging between 1.92% for fruit diameter and 8.26% for seed weight. There was significant positive association between economic traits including fruit weight with pulp weight, fruit diameter length ratio with fruit weight and pulp thickness with pulp weight. Principal component analysis revealed that variability was largely contributed by fruit weight (0.49), pulp weight (0.46), seed weight (0.45) and fruit diameter (0.42). Cluster analysis grouped phenotypes into seven groups with no clear clustering of individuals from the same area. The study highlights the significance of participatory tree selection approach and the benefits of individual tree selection in capturing wider variation and locating extreme phenotypes in IFT domestication.","PeriodicalId":20188,"journal":{"name":"Plant Genetic Resources","volume":"105 9 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138530758","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Analysis of agro-morphological variability and inter-trait relationships in Ghanaian groundnut (Arachis hypogaea L.) accessions","authors":"Richard Adu Amoah, Charles Nelimor, Bright Adu Gymafi, Richard Boampong, Collins Yeboah Osei, Abraham Yeboah, Victoria Sackey, Eric Osafo Ansah, Samuel Awuah, Abednego Opoku Mensah, Yaw Kwateng, Lawrence Misa Aboagye","doi":"10.1017/s1479262123000916","DOIUrl":"https://doi.org/10.1017/s1479262123000916","url":null,"abstract":"Germplasm characterization and evaluation are essential for the genetic improvement of crops. In this study, a collection of 204 groundnut accessions including 13 checks held by Plant Genetic Resources Research Institute, Ghana were evaluated under optimal conditions for 2 years. The objectives were to characterize the groundnut collection using 18 qualitative and 14 quantitative traits and to determine the relationships between the traits. Combined analysis of variance based on augmented design revealed significant differences (<jats:italic>P</jats:italic> &lt; 0.05) among the accessions for majority of the traits. Results of principal component analysis showed that all the quantitative traits were relevant in discriminating the accessions. Primary seed colour was the most diverse qualitative trait based on Shannon diversity index (<jats:italic>n</jats:italic> = 0.77). Frequency distribution analysis showed predominance of decumbent growth habit and pale tan seeds. Cluster analysis using qualitative traits identified five major groups of accessions and three each based on quantitative traits and joint analysis of quantitative and qualitative traits. Number of main branches (NMB) and pod width (PW) appeared the most important traits with positive contribution to yield based on correlation and path coefficient analysis. Ten promising trait-specific accessions were identified for earliness along with desirable pod and seed traits. GH 9672 and GH 9665 were identified as promising for higher grain and fodder yield. Five accessions (GH 9833, GH 9829, GH 9830, GH 9835 and GH 9750) produced ~5–30% more grain yield than the best check. This study underscored ample phenotypic variation that would ultimately be exploited for genetic improvement of groundnut.","PeriodicalId":20188,"journal":{"name":"Plant Genetic Resources","volume":"45 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138530707","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Cladistics groupings of the active breeding cocoa genetic resources of Nigeria for physicochemical and nutraceutical traits","authors":"Daniel B. Adewale, Oluwayemisi O. Adeigbe","doi":"10.1017/s1479262123000977","DOIUrl":"https://doi.org/10.1017/s1479262123000977","url":null,"abstract":"Preference for functional and nutritious food capable of meeting consumers' demand and health is on the increase. The present preliminary study seeks to assess physico-chemical and nutraceutical diversity in the cocoa bean powder of 77 genotypes present in four Nigerian cocoa field banks. Twenty ripe pods/genotypes in each of the four active breeding field banks at the Cocoa Research Institute of Nigeria (CRIN), Ibadan, Nigeria were utilized. Composite beans from the 20 pods of each genotype were singly fermented, sun-dried and milled. Duplicate samples of the powder of each genotype were analysed for physico-chemical and nutraceutical components. Twenty-one polymorphic variables distinguished the 77 cocoa genotypes. Grouping by dendogram identified four clusters, three differently and uniquely captured 100% of the genotype membership in the local clone, international clone and the regional varieties field bank but 86% of the genotypes in the hybrid trial field bank were grouped in cluster I. Prominent traits with highest values in each clusters were: protein, <jats:italic>p</jats:italic>H, Ca, K and Fe (Cluster I), Zn and Mg (Cluster II), crude fat and P (Cluster III) and crude fibre, ash, theobromine, flavonoids and caffeine (Cluster IV). Exploitable diversity for nutritional quality improvement is present in the active breeding and working collections of Nigerian cocoa field banks.","PeriodicalId":20188,"journal":{"name":"Plant Genetic Resources","volume":"39 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-11-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138530756","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}