Journal of fish biology最新文献

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Species-specific behaviour and environmental drivers of trap interactions in wild ornamental fishes. 野生观赏鱼捕集器相互作用的物种特异性行为和环境驱动因素。
IF 2 3区 农林科学
Journal of fish biology Pub Date : 2025-09-07 DOI: 10.1111/jfb.70217
Mar Pineda, Daiani Kochhann, Jose Lindoso Garrido Melo, Jan Lindström, Kathryn R Elmer, Adalberto Luis Val, Shaun S Killen
{"title":"Species-specific behaviour and environmental drivers of trap interactions in wild ornamental fishes.","authors":"Mar Pineda, Daiani Kochhann, Jose Lindoso Garrido Melo, Jan Lindström, Kathryn R Elmer, Adalberto Luis Val, Shaun S Killen","doi":"10.1111/jfb.70217","DOIUrl":"https://doi.org/10.1111/jfb.70217","url":null,"abstract":"<p><p>The harvest of animals from the wild is a pervasive selective force, especially in fisheries, where harvesting often targets individuals with specific traits. While most research has focused on large-scale commercial or recreational fisheries, little attention has been paid to artisanal fisheries, particularly those targeting ornamental species. Furthermore, environmental factors such as temperature and oxygen levels influence the behaviour of fishes, such as boldness and sociability, but their role in the harvesting process remains poorly understood. Here, we used underwater video to examine how two ornamental Amazonian fishes, Hemigrammus sp. and Copella nattereri, interact with artisanal trap gear. We quantified the number of passes, inspections, entries and exits using latency to inspect and enter traps as proxies for boldness, and coefficients of dispersion (CDs) to assess sociability and group coordination. We found that the majority of fish that inspected traps did not enter them, and a given trap typically caught one species over the other. Overall, Copella were captured more frequently, but within individual trials there was no statistical difference in catch numbers between species. While both species inspected traps, Hemigrammus exhibited significantly more passes and a higher rate of inspection. Latency to inspect and enter traps did not differ between species but decreased with increasing temperature for both. Hemigrammus also displayed greater group coordination, with higher CD values across behaviours. Notably, temperature had opposing effects on coordination: for Hemigrammus, CD of inspections increased with temperature and CD of exits decreased, whereas for Copella, inspection CD decreased and exit CD increased. These findings reveal that different species interact with fishing gear in behaviourally distinct ways, influenced by environmental conditions. This highlights the potential for selective pressures to vary not only by species, but also with ecological context. Understanding such dynamics is critical for predicting how artisanal fisheries may shape behavioural traits in wild populations.</p>","PeriodicalId":15794,"journal":{"name":"Journal of fish biology","volume":" ","pages":""},"PeriodicalIF":2.0,"publicationDate":"2025-09-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145015525","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Arctic lake trout (Salvelinus namaycush) show evidence of seasonal acclimation of cardiac adrenergic sensitivity but not heat tolerance. 北极湖鳟鱼(Salvelinus namaycush)显示出心脏肾上腺素能敏感性的季节性适应证据,但不耐热性。
IF 2 3区 农林科学
Journal of fish biology Pub Date : 2025-09-06 DOI: 10.1111/jfb.70206
Emily P Williams, Les N Harris, Jean-Sébastien Moore, Ella K Middleton, Shira A Berkelhammer, Ben Speers-Roesch, Matthew J H Gilbert
{"title":"Arctic lake trout (Salvelinus namaycush) show evidence of seasonal acclimation of cardiac adrenergic sensitivity but not heat tolerance.","authors":"Emily P Williams, Les N Harris, Jean-Sébastien Moore, Ella K Middleton, Shira A Berkelhammer, Ben Speers-Roesch, Matthew J H Gilbert","doi":"10.1111/jfb.70206","DOIUrl":"https://doi.org/10.1111/jfb.70206","url":null,"abstract":"<p><p>Many Arctic fishes experience prolonged periods of extreme cold and large thermal variation over both rapid and seasonal time scales which challenge critical physiological functions. In the central Canadian Arctic, we caught wild adult lake trout (Salvelinus namaycush) acclimatized to winter and summer temperatures to determine the extent to which they seasonally adjust cardiac thermal performance and adrenergic control. We assessed the intrinsic and maximum heart rate (f<sub>Hint</sub> and f<sub>Hmax</sub>) of anaesthetised fish through cholinergic blockade and either adrenergic blockade (f<sub>Hint</sub>) or stimulation (f<sub>Hmax</sub>) during acute warming. Contrary to expectations, S. namaycush showed largely consistent heart rate responses to acute warming between seasons and adrenergic treatments. The f<sub>Hmax</sub> increased with acute warming and reached a peak (peak f<sub>H</sub>) of 83 and 93 beats min<sup>-1</sup> at temperatures (T<sub>peak</sub>) of 19.6 and 20°C and arrhythmia occurred at temperatures (T<sub>arr</sub>) of 22.7 and 22.3°C in winter and summer, respectively. However, in the winter, adrenergic stimulation was important to achieve peak f<sub>H</sub> at high temperatures; adrenergic blockade in winter did not affect T<sub>peak</sub> (18.3°C) or T<sub>arr</sub> (21°C) but lowered peak f<sub>H</sub> to only 68 beats min<sup>-1</sup> (p < 0.05). Despite limited seasonal differences in f<sub>H</sub>, when compared at common, cool to moderate temperatures, winter acclimated fish did exhibit slower atrioventricular conduction (longer PR interval), slower ventricular depolarization (longer QRS duration) and a shorter overall systolic duration (lower QT interval). Overall, S. namaycush exhibited no seasonal plasticity in cardiac thermal tolerance and modest seasonal changes in adrenergic control at high temperatures and in cardiac electrical activity. This limited thermal plasticity may constrain their ability to cope with seasonally distinct thermal challenges including extreme heat events and increase their reliance on other coping or avoidance mechanisms when thermal refugia are available (e.g. behavioural thermoregulation). An increased need for avoidance behaviour could limit the accessibility of key habit for foraging and spawning which occurs in late summer in this region (Dubos et al., 2024).</p>","PeriodicalId":15794,"journal":{"name":"Journal of fish biology","volume":" ","pages":""},"PeriodicalIF":2.0,"publicationDate":"2025-09-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145006251","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comment on "Multiple tools to investigate the origin of the exotic species Chinook salmon Oncorhynchus tshawytscha (Walbaum, 1792) (Salmonidae) in the world's largest chocked coastal lagoon (Gonçalves et al., 2025)". 评论“在世界上最大的沿海阻塞泻湖中调查外来物种奇努克鲑鱼Oncorhynchus tshawytscha (Walbaum, 1792)(鲑科)起源的多种工具(gonalves et al., 2025)”。
IF 2 3区 农林科学
Journal of fish biology Pub Date : 2025-09-05 DOI: 10.1111/jfb.70222
Guillermo Figueroa-Muñoz, Christina A Murphy, Ivan Arismendi, Martín Laporta, Graciela Fabiano, Tomás Chalde, Javier E Ciancio, Cecilia Y Di Prinzio, J Andres Olivos, Daniel Gomez-Uchida
{"title":"Comment on \"Multiple tools to investigate the origin of the exotic species Chinook salmon Oncorhynchus tshawytscha (Walbaum, 1792) (Salmonidae) in the world's largest chocked coastal lagoon (Gonçalves et al., 2025)\".","authors":"Guillermo Figueroa-Muñoz, Christina A Murphy, Ivan Arismendi, Martín Laporta, Graciela Fabiano, Tomás Chalde, Javier E Ciancio, Cecilia Y Di Prinzio, J Andres Olivos, Daniel Gomez-Uchida","doi":"10.1111/jfb.70222","DOIUrl":"https://doi.org/10.1111/jfb.70222","url":null,"abstract":"","PeriodicalId":15794,"journal":{"name":"Journal of fish biology","volume":" ","pages":""},"PeriodicalIF":2.0,"publicationDate":"2025-09-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145000711","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Associations between fishes (Actinopterygii: Teleostei) and anthozoans (Anthozoa: Hexacorallia) in epipelagic waters based on in situ records. 基于原位记录的上层海洋鱼类(放线鱼科:Teleostei)和珊瑚虫(珊瑚虫科:Hexacorallia)之间的关系。
IF 2 3区 农林科学
Journal of fish biology Pub Date : 2025-09-05 DOI: 10.1111/jfb.70214
Gabriel V F Afonso, G David Johnson, R Collins, Murilo N L Pastana
{"title":"Associations between fishes (Actinopterygii: Teleostei) and anthozoans (Anthozoa: Hexacorallia) in epipelagic waters based on in situ records.","authors":"Gabriel V F Afonso, G David Johnson, R Collins, Murilo N L Pastana","doi":"10.1111/jfb.70214","DOIUrl":"https://doi.org/10.1111/jfb.70214","url":null,"abstract":"<p><p>We formally describe the association of fishes and anthozoans in epipelagic waters, extending this relationship to beyond the benthos. In situ observations and photographs of Aluterus schoepfii, Ariomma regulus, Caranx cf. latus and Brama spp. swimming alongside or holding larval tube anemones (Cerianthidae and Arachnactidae) and larval zoanthids (Sphenopidae) were made during blackwater SCUBA dives off Palm Beach, Florida, USA, and off Punaauia, Tahiti, French Polynesia. We report and illustrate the behaviour of these interactions, and suggest an advantage for the anthozoans.</p>","PeriodicalId":15794,"journal":{"name":"Journal of fish biology","volume":" ","pages":""},"PeriodicalIF":2.0,"publicationDate":"2025-09-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145000691","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Biofluorescence as a tool to resolve crypsis in two bonefish species, Albula goreensis and Albula vulpes, with comments on other external morphology. 生物荧光技术在两种骨鱼,Albula goreensis和Albula vulpes中的应用,并对其他外部形态进行了评论。
IF 2 3区 农林科学
Journal of fish biology Pub Date : 2025-09-03 DOI: 10.1111/jfb.70209
Mason A Thurman, Steven M Lombardo, Ellis R Loew, Paul S Wills, Christopher Robinson, Aaron J Adams
{"title":"Biofluorescence as a tool to resolve crypsis in two bonefish species, Albula goreensis and Albula vulpes, with comments on other external morphology.","authors":"Mason A Thurman, Steven M Lombardo, Ellis R Loew, Paul S Wills, Christopher Robinson, Aaron J Adams","doi":"10.1111/jfb.70209","DOIUrl":"10.1111/jfb.70209","url":null,"abstract":"<p><p>Bonefish Albula spp. in the Western Atlantic have historically been morphometrically and phenotypically indiscernible. We used biofluorescence in two sympatric, cryptic bonefish species, Albula goreensis and Albula vulpes, to develop a rapid and inexpensive in situ survey for species identification that can be used by managers and recreational anglers. Under ultraviolet (379-387 nm) and royal blue (440-457 nm) lights, the two species expressed differing biofluorescence on the iris, axil of the pectoral fins, the vent and the axil of the pelvic fins. Green biofluorescent patterns were most easily discernible under royal blue light while viewing through a Tiffen Yellow #12 longpass filter, although the use of an ultraviolet light with no visual filter was the most cost-effective. We recommend the adoption of biofluorescent field surveys for bonefish using ultraviolet light on the axil of the pectoral fins and the vent for managers and anglers to differentiate A. goreensis and A. vulpes in real time. The application of this survey will allow for both fisheries' independent and dependent data to be appropriately attributed at the species level, allowing for more effective management of the economically important western Atlantic bonefish fishery.</p>","PeriodicalId":15794,"journal":{"name":"Journal of fish biology","volume":" ","pages":""},"PeriodicalIF":2.0,"publicationDate":"2025-09-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144955920","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Assessing metabolic rate and post-tagging recovery in juvenile fish. 评估幼鱼的代谢率和标记后恢复。
IF 2 3区 农林科学
Journal of fish biology Pub Date : 2025-09-02 DOI: 10.1111/jfb.70208
Oscar D P Notman-Grobler, Paris M B Mastrodimitropoulos, Alessandro Bevilacqua, Robert J Lennox, Hugo Flávio
{"title":"Assessing metabolic rate and post-tagging recovery in juvenile fish.","authors":"Oscar D P Notman-Grobler, Paris M B Mastrodimitropoulos, Alessandro Bevilacqua, Robert J Lennox, Hugo Flávio","doi":"10.1111/jfb.70208","DOIUrl":"10.1111/jfb.70208","url":null,"abstract":"<p><p>Juvenile fish play a crucial role in the health of aquatic ecosystems, serving both as the foundation for future adult populations and as a valuable food source. Studying the juvenile life stage of fish using acoustic telemetry is inherently challenging due to their small size and associated difficulties in tracking and data collection. Recent advances in telemetry, including the miniaturization of tags, have enabled researchers to investigate previously understudied size classes of fish. Tagging fish can introduce sublethal effects that alter their physiology and behaviour, ultimately biasing the collected data; this effect is exacerbated in smaller-bodied fish, which are generally more sensitive to tagging procedures. Our study tested whether tagging juvenile brook trout (Salvelinus fontinalis) of two size classes (10-12 and 13-16 cm fork length, n = 80) with a LOTEK JSATS PinTag (0.22 g, mean tag burden 1.11% of body mass, range 0.54-2.00%) impacted their oxygen consumption rates ( <math> <semantics> <mrow> <msub><mover><mi>M</mi> <mo>̇</mo></mover> <msub><mi>O</mi> <mn>2</mn></msub> </msub> </mrow> <annotation>$$ {dot{M}}_{{mathrm{O}}_2} $$</annotation></semantics> </math> ) over the 2 days following tagging. Handling and tagging caused no mortalities, although we observed a nearly significant effect (p = 0.06) of the experimental group (control, anaesthesia, surgery, tagged) on standard metabolic rate (SMR). This was driven by a 7% decrease in the SMR of the tagged animals, which were significantly different from the control group when compared directly (p = 0.02). This marginal effect in standard metabolic rate, combined with the absence of significant effects on maximum metabolic rate, aerobic scope and post-exercise recovery, suggests that the JSATS PinTag does not impair the aerobic metabolic capacity of fish of this size. Our findings indicate that neither the surgery procedure nor the presence of the tag limit the brook trout's capacity for burst movement, which is highly relevant for predator-evasion responses after release in the wild. In addition, we evaluated wound recovery and suture retention over a 3-week period using either braided or monofilament suture material. While braided sutures caused more immediate irritation and were more prone to fungal growth, their quicker expulsion may reduce long-term discomfort compared to monofilament sutures. Determining the optimal suture type may ultimately depend on study duration and objectives, and longer-term monitoring could clarify which material best supports overall healing.</p>","PeriodicalId":15794,"journal":{"name":"Journal of fish biology","volume":" ","pages":""},"PeriodicalIF":2.0,"publicationDate":"2025-09-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144956802","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Longest documented coastal migrations of shortnose sturgeon. 记录最长的短鼻鲟沿海迁徙。
IF 2 3区 农林科学
Journal of fish biology Pub Date : 2025-09-02 DOI: 10.1111/jfb.70205
Joseph D Nolan, William C Post, Ellen Waldrop, Joseph J Facendola, Michael S Loeffler, William Collier, Evan C Ingram, Martin J Hamel, Adam G Fox
{"title":"Longest documented coastal migrations of shortnose sturgeon.","authors":"Joseph D Nolan, William C Post, Ellen Waldrop, Joseph J Facendola, Michael S Loeffler, William Collier, Evan C Ingram, Martin J Hamel, Adam G Fox","doi":"10.1111/jfb.70205","DOIUrl":"10.1111/jfb.70205","url":null,"abstract":"<p><p>The shortnose sturgeon (SNS; Acipenser brevirostrum) is a United States federally endangered diadromous species. Although SNS spend much of their time in riverine habitat, inter-river migrations have been documented in northern populations. However, the inter-river migratory behaviour and distance capabilities of southern SNS are poorly understood. In this communication, we describe two SNS that migrated approximately 425 km across the coast, far exceeding the previously reported maximum coastal migration distance for the species. These observations offer critical updates for species descriptions and management regarding the coastal migration ability of SNS.</p>","PeriodicalId":15794,"journal":{"name":"Journal of fish biology","volume":" ","pages":""},"PeriodicalIF":2.0,"publicationDate":"2025-09-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144956623","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Salinity-induced variations in growth performance, stress biomarkers and biochemical profiles of striped catfish (Pangasianodon hypophthalmus, Sauvage, 1878). 盐度诱导条纹鲶鱼生长性能、应激生物标志物和生化特征的变化(Pangasianodon hypophthalmus, Sauvage, 1878)。
IF 2 3区 农林科学
Journal of fish biology Pub Date : 2025-09-02 DOI: 10.1111/jfb.70211
Muhammad Nouman Riaz, Muhammad Hafeez-Ur-Rehman, Hamda Azmat, Shahid Mehmood
{"title":"Salinity-induced variations in growth performance, stress biomarkers and biochemical profiles of striped catfish (Pangasianodon hypophthalmus, Sauvage, 1878).","authors":"Muhammad Nouman Riaz, Muhammad Hafeez-Ur-Rehman, Hamda Azmat, Shahid Mehmood","doi":"10.1111/jfb.70211","DOIUrl":"https://doi.org/10.1111/jfb.70211","url":null,"abstract":"<p><p>Environmental salinity affects the growth, survival rate and physiological functions of fish. In this study, the effects of salinity stress on Pangasianodon hypophthalmus (Sauvage, 1878) fingerlings were examined over a 90-day period. After acclimatization, a total of 300 P. hypophthalmus fingerlings were randomly assigned into three replicates and divided into five treatment groups with salinity levels of 0‰, 6‰, 12‰, 18‰, and 24‰ and with a stocking density of 20 fish per aquarium. After 90 days, the final weight, weight gain, weight gain percentage and specific growth rate significantly (p < 0.0001) decreased with increasing salinity, while feed conversion ratio values increased. The viscerosomatic index and hepatosomatic index significantly (p < 0.0001) increased up to 12‰ salinity, then decreased. Survival rate differed significantly (p < 0.0001), with a maximum at 12‰ and a minimum at 24‰ salinity level. Moisture and ash content were significantly higher (p < 0.0001) at 18‰ and 24‰. Crude lipid and protein contents were significantly higher (p < 0.0001) at lower salinity levels. Haematological content was significantly higher (p < 0.0001) at 0‰, 6‰ and 12‰ salinity levels, then decreased. The values of globulin, albumin and total protein also declined significantly (p < 0.0001) with increasing salinity. Conversely, values of alanine aminotransferase and aspartate aminotransferase increased significantly (p < 0.0001) from 0‰ to 24‰. Total cholesterol, total glyceride and high-density lipoprotein cholesterol were significantly higher (p < 0.0001) at 12‰ and lower at 24‰. Stress parameters, such as glucose and cortisol, and lipid peroxidation parameters, such as catalase, glutathione peroxidase, superoxide dismutase and malondialdehyde, increased significantly (p < 0.0001) as the salinity level increased. This study demonstrates that the optimal salinity level for the cultivation of P. hypophthalmus in inland saline groundwater is 12‰, which ensures the maximum survival rate.</p>","PeriodicalId":15794,"journal":{"name":"Journal of fish biology","volume":" ","pages":""},"PeriodicalIF":2.0,"publicationDate":"2025-09-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144956669","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A single nucleotide polymorphism genotyping panel for efficient genetic stock identification of the Teno river Atlantic salmon (Salmo salar) population complex. 用单核苷酸多态性基因分型小组对特诺河大西洋鲑鱼(Salmo salar)种群复群进行有效的遗传种群鉴定。
IF 2 3区 农林科学
Journal of fish biology Pub Date : 2025-09-01 DOI: 10.1111/jfb.70179
Helena Johansson, Jaakko Erkinaro, Morten Falkegård, Anders Foldvik, Panu Orell, Craig R Primmer, Victoria L Pritchard
{"title":"A single nucleotide polymorphism genotyping panel for efficient genetic stock identification of the Teno river Atlantic salmon (Salmo salar) population complex.","authors":"Helena Johansson, Jaakko Erkinaro, Morten Falkegård, Anders Foldvik, Panu Orell, Craig R Primmer, Victoria L Pritchard","doi":"10.1111/jfb.70179","DOIUrl":"https://doi.org/10.1111/jfb.70179","url":null,"abstract":"<p><p>A new single nucleotide polymorphism (SNP) panel for genetic stock identification in the Teno river Atlantic salmon, Salmo salar L., fishery was developed, with a view to improving on an existing microsatellite panel. Twenty-two genetically differentiated reporting units were proposed based on population genetic analyses of 1212 individuals collected at 37 locations in the river and genotyped for >33,000 genome-wide SNPs. A small subset of these SNPs was selected for genetic stock identification (GSI) using an iterative process that considered their diversity and differentiation across reporting units. A genotyping-by-sequencing assay was developed to simultaneously genotype 180 of these GSI SNPs plus a sexing marker. This new SNP panel showed comparative GSI power to the microsatellite panel, with anticipated improvements in terms of cost, speed and robustness, and transferability across laboratories and genotyping platforms. Mixed-stock analysis of the 2018 Teno river salmon catch using the new panel inferred that all 22 reporting units contributed to the fishery. Estimated catch proportions positively scaled with an independent estimate of reporting unit productivity: target spawning female biomass. This demonstrates the usefulness and efficiency of the 180 SNP panel for Atlantic salmon GSI in the Teno river system. If conducted on a regular basis, GSI can enable fine-tuning of management strategies to promote sustainable fishing.</p>","PeriodicalId":15794,"journal":{"name":"Journal of fish biology","volume":" ","pages":""},"PeriodicalIF":2.0,"publicationDate":"2025-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144956717","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Combined transcriptome and metabolome analysis of tilapia response to hypoxia and Streptococcus agalactiae co-exposure. 罗非鱼对缺氧和无乳链球菌共暴露反应的转录组和代谢组分析。
IF 2 3区 农林科学
Journal of fish biology Pub Date : 2025-08-28 DOI: 10.1111/jfb.70199
Zaoya Zhao, Ling Wang, Yanjin Chen, Jinyu Liu, Qianxing Zou, Shuyu Han, Yi Yi, Jingu Shi
{"title":"Combined transcriptome and metabolome analysis of tilapia response to hypoxia and Streptococcus agalactiae co-exposure.","authors":"Zaoya Zhao, Ling Wang, Yanjin Chen, Jinyu Liu, Qianxing Zou, Shuyu Han, Yi Yi, Jingu Shi","doi":"10.1111/jfb.70199","DOIUrl":"https://doi.org/10.1111/jfb.70199","url":null,"abstract":"<p><p>Deterioration of water quality, especially low dissolved oxygen, has contributed to outbreaks of streptococcal disease in tilapia. It has been reported that hypoxia increases the mortality of tilapia during Streptococcus agalactiae infection. However, the underlying mechanism of the increased susceptibility of tilapia to S. agalactiae caused by hypoxia remains unknown. In this study, the pathological effects of hypoxia and S. agalactiae co-exposure in the liver of tilapia were investigated using transcriptome and metabolome analyses. When subjected to individual hypoxia or S. agalactiae exposure, the liver of tilapia exhibited significant pathological effects, including vacuolation, severe necrosis, nuclear and cellular polymorphism, hemocyte infiltration/leakage and abundant granular deposits. Moreover, these pathological effects became more severe under hypoxia and S. agalactiae co-exposure. In addition, S. agalactiae exposure increased inflammation-related gene expression, including CC1, CC2, IL-1β, TNFα, but this effect was suppressed by hypoxia. Transcriptomic analysis revealed that carbohydrate, lipid and amino acid metabolic pathways were significantly altered in the hypoxia and S. agalactiae co-exposure group compared to those in the control group. Among these metabolic pathways, only lipid metabolism was obviously altered at the metabolite level, as revealed by metabolomics analysis. Further combined analysis of the transcriptome and metabolome suggested that, in lipid metabolic pathways, glycerophospholipid metabolism should be a key pathway in S. agalactiae-infected tilapia under hypoxic conditions. Taken together, the results of the combined analysis of the global changes in the transcriptome and metabolome of the tilapia liver under hypoxia and S. agalactiae co-exposure revealed important metabolic pathways involved in the pathological process by which hypoxia increases the susceptibility of tilapia to S. agalactiae.</p>","PeriodicalId":15794,"journal":{"name":"Journal of fish biology","volume":" ","pages":""},"PeriodicalIF":2.0,"publicationDate":"2025-08-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144956664","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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