{"title":"Apprehending the potential of BABY BOOM transcription factors to mitigate cotton regeneration and transformation","authors":"Caner Yavuz, Shakhnozakhan Tillaboeva, A. Bakhsh","doi":"10.1186/s42397-020-00071-3","DOIUrl":"https://doi.org/10.1186/s42397-020-00071-3","url":null,"abstract":"","PeriodicalId":15400,"journal":{"name":"Journal of Cotton Research","volume":"10 1","pages":""},"PeriodicalIF":2.6,"publicationDate":"2020-11-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"76902356","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Cotton N rate could be reduced further under the planting model of late sowing and high-density in the Yangtze River valley","authors":"Xinghu Song, Ying Huang, Yuan Yuan, Atta Tung Shahbaz, Souliyanonh Biangkham, Guozheng Yang","doi":"10.1186/s42397-020-00065-1","DOIUrl":"https://doi.org/10.1186/s42397-020-00065-1","url":null,"abstract":"","PeriodicalId":15400,"journal":{"name":"Journal of Cotton Research","volume":"58 1","pages":""},"PeriodicalIF":2.6,"publicationDate":"2020-10-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"80266093","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Cuixia Liu, Zhifang Li, Lingling Dou, Yi Yuan, Changsong Zou, Haihong Shang, Langjun Cui, G. Xiao
{"title":"A genome-wide identification of the BLH gene family reveals BLH1 involved in cotton fiber development","authors":"Cuixia Liu, Zhifang Li, Lingling Dou, Yi Yuan, Changsong Zou, Haihong Shang, Langjun Cui, G. Xiao","doi":"10.1186/s42397-020-00068-y","DOIUrl":"https://doi.org/10.1186/s42397-020-00068-y","url":null,"abstract":"","PeriodicalId":15400,"journal":{"name":"Journal of Cotton Research","volume":"517 1","pages":""},"PeriodicalIF":2.6,"publicationDate":"2020-09-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"77145022","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
F. Chen, Yanjun Guo, Li Chen, Xin Gan, Min Liu, Juan Li, Wenliang Xu
{"title":"Global identification of genes associated with xylan biosynthesis in cotton fiber","authors":"F. Chen, Yanjun Guo, Li Chen, Xin Gan, Min Liu, Juan Li, Wenliang Xu","doi":"10.1186/s42397-020-00063-3","DOIUrl":"https://doi.org/10.1186/s42397-020-00063-3","url":null,"abstract":"","PeriodicalId":15400,"journal":{"name":"Journal of Cotton Research","volume":"3 1","pages":""},"PeriodicalIF":2.6,"publicationDate":"2020-09-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"85425699","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Da Fabrice, Dannon A. Elie, D. O. Kobi, ZinsouAmégnikin Valerien, Houndété A. Thomas, TOFFA-MEHINTO Joëlle, Elegbede I. A. T. Maurille, Olou B. Dénis, T. Manuele
{"title":"Toward the efficient use of Beauveria bassiana in integrated cotton insect pest management","authors":"Da Fabrice, Dannon A. Elie, D. O. Kobi, ZinsouAmégnikin Valerien, Houndété A. Thomas, TOFFA-MEHINTO Joëlle, Elegbede I. A. T. Maurille, Olou B. Dénis, T. Manuele","doi":"10.1186/s42397-020-00061-5","DOIUrl":"https://doi.org/10.1186/s42397-020-00061-5","url":null,"abstract":"","PeriodicalId":15400,"journal":{"name":"Journal of Cotton Research","volume":"53 1","pages":""},"PeriodicalIF":2.6,"publicationDate":"2020-08-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"90615746","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Heritability and correlation analysis of morphological and yield traits in genetically modified cotton","authors":"Abdul Rehman, Nida Mustafa, X. Du, M. Azhar","doi":"10.1186/s42397-020-00067-z","DOIUrl":"https://doi.org/10.1186/s42397-020-00067-z","url":null,"abstract":"","PeriodicalId":15400,"journal":{"name":"Journal of Cotton Research","volume":"193 1","pages":""},"PeriodicalIF":2.6,"publicationDate":"2020-08-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"79689055","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Lingling Ma, Ying Su, Hushuai Nie, Yupeng Cui, Cheng Cheng, Babar Ijaz, J. Hua
{"title":"QTL and genetic analysis controlling fiber quality traits using paternal backcross population in upland cotton","authors":"Lingling Ma, Ying Su, Hushuai Nie, Yupeng Cui, Cheng Cheng, Babar Ijaz, J. Hua","doi":"10.1186/s42397-020-00060-6","DOIUrl":"https://doi.org/10.1186/s42397-020-00060-6","url":null,"abstract":"","PeriodicalId":15400,"journal":{"name":"Journal of Cotton Research","volume":"281 1","pages":""},"PeriodicalIF":2.6,"publicationDate":"2020-08-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"79612326","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
G. Song, Qiuhong Yang, Dongyun Zuo, Hailiang Cheng, Youping Zhang, Qiaolian Wang, J. Ashraf, Xiaoxu Feng, Simin Li, Xiaoqing Chen, Shang Liu
{"title":"Improved Gossypium raimondii genome using a Hi-C-based proximity-guided assembly","authors":"G. Song, Qiuhong Yang, Dongyun Zuo, Hailiang Cheng, Youping Zhang, Qiaolian Wang, J. Ashraf, Xiaoxu Feng, Simin Li, Xiaoqing Chen, Shang Liu","doi":"10.21203/rs.3.rs-63005/v1","DOIUrl":"https://doi.org/10.21203/rs.3.rs-63005/v1","url":null,"abstract":"Introduction Genome sequence plays an important role in both basic and applied studies. Gossypium raimondii , the putative contributor of the D subgenome of upland cotton ( G. hirsutum ), highlights the need to improve the genome quality rapidly and efficiently. Methods We performed Hi-C sequencing of G. raimondii and reassembled its genome based on a set of new Hi-C data and previously published scaffolds. We also compared the reassembled genome sequence with the previously published G. raimondii genomes for gene and genome sequence collinearity. Result A total of 98.42% of scaffold sequences were clustered successfully, among which 99.72% of the clustered sequences were ordered and 99.92% of the ordered sequences were oriented with high-quality. Further evaluation of results by heat-map and collinearity analysis revealed that the current reassembled genome is significantly improved than the previous one (Nat Genet 44:98–1103, 2012). Conclusion This improvement in G. raimondii genome not only provides a better reference to increase study efficiency but also offers a new way to assemble cotton genomes. Furthermore, Hi-C data of G. raimondii may be used for 3D structure research or regulating analysis.","PeriodicalId":15400,"journal":{"name":"Journal of Cotton Research","volume":"1 1","pages":"1-7"},"PeriodicalIF":2.6,"publicationDate":"2020-08-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"89585537","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Feasibility study on the use of near-infrared spectroscopy for rapid and nondestructive determination of gossypol content in intact cottonseeds","authors":"Cheng Li, Bangsong Su, Tianlun Zhao, Cong Li, Jinhong Chen, Shuijin Zhu","doi":"10.1186/s42397-021-00088-2","DOIUrl":"https://doi.org/10.1186/s42397-021-00088-2","url":null,"abstract":"","PeriodicalId":15400,"journal":{"name":"Journal of Cotton Research","volume":"7 1","pages":""},"PeriodicalIF":2.6,"publicationDate":"2020-08-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"91167297","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}