{"title":"Preface Special Issue: 15th International Symposium on Bioinformatics Research and Applications (ISBRA 2019)","authors":"Zhipeng Cai, P. Skums, A. Zelikovsky","doi":"10.1089/cmb.2019.29024.zc","DOIUrl":"https://doi.org/10.1089/cmb.2019.29024.zc","url":null,"abstract":"","PeriodicalId":13612,"journal":{"name":"Int. J. Comput. Biol. Drug Des.","volume":"32 1","pages":"131-132"},"PeriodicalIF":0.0,"publicationDate":"2020-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"77097048","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"LCLE: a web portal for lncRNA network analysis in liver cancer","authors":"Xiuquan Wang, Keli Xu, Junqing Wang, Yunyun Zhou","doi":"10.1504/IJCBDD.2020.113855","DOIUrl":"https://doi.org/10.1504/IJCBDD.2020.113855","url":null,"abstract":"","PeriodicalId":13612,"journal":{"name":"Int. J. Comput. Biol. Drug Des.","volume":"15 1","pages":"520-528"},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"78980665","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"In silico drug target identification and pharmacophore mapping for Leishmania donovani based on metabolic pathways","authors":"Nikita Chordia, Deepak Bhayal, Priyesh Hardia","doi":"10.1504/ijcbdd.2020.10033060","DOIUrl":"https://doi.org/10.1504/ijcbdd.2020.10033060","url":null,"abstract":"","PeriodicalId":13612,"journal":{"name":"Int. J. Comput. Biol. Drug Des.","volume":"129 1","pages":"378-389"},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"86594798","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"In-silico analysis of PON1, PON2 and PON3 genes role in coronary artery disease","authors":"Sana Ashiq, K. Ashiq","doi":"10.1504/ijcbdd.2020.10033059","DOIUrl":"https://doi.org/10.1504/ijcbdd.2020.10033059","url":null,"abstract":"","PeriodicalId":13612,"journal":{"name":"Int. J. Comput. Biol. Drug Des.","volume":"16 1","pages":"415-423"},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"85939861","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
C. D. Vandana, K. Shanti, P. Karunakar, V. Chandramohan
{"title":"In silico studies of bioactive phytocompounds with anticancer activity from in vivo and in vitro extracts of Justicia wynaadensis (Nees) T. Anderson","authors":"C. D. Vandana, K. Shanti, P. Karunakar, V. Chandramohan","doi":"10.1504/IJCBDD.2020.113836","DOIUrl":"https://doi.org/10.1504/IJCBDD.2020.113836","url":null,"abstract":"The current study is aimed at substantiating the anticancer activity of phytocompounds identified from extracts of in vivo and in vitro propagated Justicia wynaadensis (Nees) T. Anderson using in silico molecular docking and dynamics study. Few phytocompounds with anticancer activity based on literature were selected from GC-MS results of aqueous extract, methanolic extract of callus and in vitro propagated leaf of Justicia wynaadensis respectively. Totally twelve ligands were docked with Thymidylate synthase, where the binding affinity and efficiencies were analysed and compared with the reference drug Capecitabine. The docking result suggested the presence of compounds with anticancer activity. All the twelve ligands showed binding affinity ranging from -5.0 kcal/mol to -8.4 kcal/mol. To investigate the mechanism of action of Campesterol, Stigmasterol and Capecitabine with the target protein, these compounds were subjected to dynamic simulation which revealed that Campesterol was more stable than Stigmasterol and could be a potential lead-like molecule.","PeriodicalId":13612,"journal":{"name":"Int. J. Comput. Biol. Drug Des.","volume":"60 1","pages":"582-601"},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"89388973","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Interactions of Leptospiral PI-PLC with the membrane phosphoinositides: an insight of the protein-phospholipid association in the pathogenesis","authors":"T. Samaha","doi":"10.1504/ijcbdd.2020.107315","DOIUrl":"https://doi.org/10.1504/ijcbdd.2020.107315","url":null,"abstract":"","PeriodicalId":13612,"journal":{"name":"Int. J. Comput. Biol. Drug Des.","volume":"49 1","pages":"200-208"},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"90588258","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
S. Srinivasan, Y. Paat, Philmore Halls, Ruth Kalule, Thomas E. Harvey
{"title":"Predicting re-admission to hospital for diabetes treatment: a machine learning solution","authors":"S. Srinivasan, Y. Paat, Philmore Halls, Ruth Kalule, Thomas E. Harvey","doi":"10.1504/IJCBDD.2020.113823","DOIUrl":"https://doi.org/10.1504/IJCBDD.2020.113823","url":null,"abstract":"","PeriodicalId":13612,"journal":{"name":"Int. J. Comput. Biol. Drug Des.","volume":"13 1","pages":"539-554"},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"81603066","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Achal Awasthi, Shenglong Tan, Travis S. Johnson, X. Mo, Kunjie Fan, Yan Zhang
{"title":"PgenePapers: a novel database and search tools of reported regulatory pseudogenes","authors":"Achal Awasthi, Shenglong Tan, Travis S. Johnson, X. Mo, Kunjie Fan, Yan Zhang","doi":"10.1504/IJCBDD.2020.113820","DOIUrl":"https://doi.org/10.1504/IJCBDD.2020.113820","url":null,"abstract":"","PeriodicalId":13612,"journal":{"name":"Int. J. Comput. Biol. Drug Des.","volume":"37 1","pages":"504-519"},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"76457231","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Generating simulated SNP array and sequencing data to assess genomic segmentation algorithms","authors":"M. Zucker, K. Coombes","doi":"10.1504/IJCBDD.2020.113822","DOIUrl":"https://doi.org/10.1504/IJCBDD.2020.113822","url":null,"abstract":"","PeriodicalId":13612,"journal":{"name":"Int. J. Comput. Biol. Drug Des.","volume":"22 1","pages":"438-453"},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"76199602","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Bjarne R. Bartlett, Yong Zhu, Mark Menor, V. Khadka, Jicai Zhang, Jie Zheng, B. Jiang, Youping Deng
{"title":"Development of a RNA-Seq based prognostic signature for colon cancer","authors":"Bjarne R. Bartlett, Yong Zhu, Mark Menor, V. Khadka, Jicai Zhang, Jie Zheng, B. Jiang, Youping Deng","doi":"10.1504/IJCBDD.2020.113872","DOIUrl":"https://doi.org/10.1504/IJCBDD.2020.113872","url":null,"abstract":"","PeriodicalId":13612,"journal":{"name":"Int. J. Comput. Biol. Drug Des.","volume":"95 1","pages":"488-503"},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"80654683","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}