Ichthyological Research最新文献

{"title":"Genomic reconsideration of fish non-monophyly: why cannot we simply call them all ‘fish’?","authors":"Shigehiro Kuraku, Mana Sato, Kohta Yoshida, Yoshinobu Uno","doi":"10.1007/s10228-023-00939-9","DOIUrl":"https://doi.org/10.1007/s10228-023-00939-9","url":null,"abstract":"<p>Extant ‘fishes’ belong to jawless, cartilaginous, actinopterygian, or sarcopterygian fish lineages. They comprise a non-monophyletic group of vertebrates from which tetrapods are excluded, and they are therefore paraphyletic. Recent advances in whole-genome sequencing have shed light on phylogenetic relationships, divergence times among major fish lineages, and the molecular basis of phenotypic diversity. This review encompasses the diversity of extant fishes and explores the variation in genomic organization and its evolutionary origins. This review begins with evaluating available genomic sequence resources with a focus on literally complete (‘telomere-to-telomere’) sequencing. Next, it discusses among-lineage variations in genomic contents, considering karyotype reports, genome sizes, and whole-genome duplication events. Additionally, we investigate three families of protein-coding genes, visual opsins, aquaporins (Aqps), and Hox genes, as they offer insights into morphological and physiological differences among major fish lineages. Overall, our technical basis of analyzing fish genomes and the knowledge of genomic organization provide valuable insights into our vertebrate-wide understanding of how molecular mechanisms specifying variable phenotypes are encoded in genomic sequence information.</p>","PeriodicalId":13237,"journal":{"name":"Ichthyological Research","volume":"62 1","pages":""},"PeriodicalIF":1.2,"publicationDate":"2023-12-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138547716","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Taxonomic revision of the genus Equulites Fowler 1904 (Acanthuriformes: Leiognathidae)","authors":"Hiromu Suzuki, Seishi Kimura","doi":"10.1007/s10228-023-00935-z","DOIUrl":"https://doi.org/10.1007/s10228-023-00935-z","url":null,"abstract":"<p>This study is a taxonomic review of the ponyfish genus <i>Equulites</i> Fowler 1904 (Leiognathidae), which is diagnosed by the following combination of characters: downward projecting mouth; small teeth forming a narrow band on jaws; a dark blotch on neither nape nor spinous dorsal fin; clearing of the guanine-lined gas bladder extending to the full length of the bladder, not restricted posteriorly, a triangular or trapezoid translucent patch ventrolaterally on body in males; dark vermiculation, broad oblong ring markings and/or short oblique lines on the dorsolateral body. Ten species are herein recognized: three species of the <i>Equulites elongatus</i> species group [<i>Equulites aethopos</i> Suzuki and Kimura 2017—restricted to the southern Red Sea; <i>Equulites elongatus</i> (Günther 1874)—Myanmar, Indonesia and northern Australia; <i>Equulites popei</i> (Whitley 1932)—the Red Sea, Mozambique, Oman, Gulf of Thailand, Malaysia, Philippines and Japan, Mediterranean by Lessepian migration]; <i>Equulites berbis</i> (Valenciennes <i>in</i> Cuvier and Valenciennes 1835) (neotype designated herein)—widely distributed in the Indo-West Pacific, from the Red Sea and eastern coast of Africa to Indonesia, north to Japan, Mediterranean by Lessepian migration; <i>Equulites laterofenestra</i> (Sparks and Chakrabarty 2007)—Malaysia, Philippines, Indonesia and northern Australia; <i>Equulites leuciscus</i> (Günther 1860)—Seychelles, Myanmar, Thailand, Malaysia, Philippines, Indonesia, Papua New Guinea, northern Australia, Taiwan, and Japan; <i>Equulites macrolepis</i> sp. nov. Suzuki, Osmany and Kimura—Pakistan and western coast of Thailand; <i>Equulites oblongus</i> (Valenciennes <i>in</i> Cuvier and Valenciennes 1835) (lectotype designated herein)—India, Sri Lanka, Thailand, Malaysia, Philippines, Indonesia and Timor Island, north to Japan; <i>Equulites rivulatus</i> (Temminck and Schlegel 1845)—China, Taiwan, Korea and Japan; <i>Equulites ryukyuensis</i> sp. nov. Kimura and Suzuki—restricted to Okinawa, Japan. Diagnoses and descriptions (except for the <i>Equulites elongatus</i> species group) are provided for each species. The taxonomical status of <i>Equula lineolata</i> Valenciennes <i>in</i> Cuvier and Valenciennes 1835 is discussed.</p>","PeriodicalId":13237,"journal":{"name":"Ichthyological Research","volume":"1 1","pages":""},"PeriodicalIF":1.2,"publicationDate":"2023-12-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138547655","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Reinstatement and redescription of the monocle bream Scolopsis regina Whitley 1937 (Perciformes: Nemipteridae)","authors":"Shotaro Ishihara, Barry C. Russell, Hiroyuki Motomura","doi":"10.1007/s10228-023-00940-2","DOIUrl":"https://doi.org/10.1007/s10228-023-00940-2","url":null,"abstract":"<p>The validity of <i>Scolopsis regina</i> Whitley 1937, described from a single specimen from Australia and long treated as a junior synonym of <i>Scolopsis monogramma</i> (Cuvier <i>in</i> Cuvier and Valenciennes 1830), is confirmed in this study. The two species share the following features: 45–48 lateral-line scales; 9–11 total gill rakers on first gill arch; no anteriorly projecting suborbital spine; scaled dorsal area of head reaching anteriorly to between anterior margin of eye and posterior nostril; bony ridge of opercle and lower limb of preopercle scaled; scaled lateral area of head extending to just behind eye; and two longitudinal blue bands connecting anterior margins of eyes when fresh. However, <i>S. regina</i> is distinguished from <i>S. monogramma</i> by having 18–20 (modally 19) scale rows below the lateral line [vs. 17–20 (18) in <i>S. monogramma</i>], 6 or 7 (7) preopercular scale rows below eye [5 or 6 (6)], two distinct brown bands across dorsum of snout after preservation (lower band indistinct), a distinct suborbital blue band from lower margin of eye to upper-jaw lip when fresh (blue band indistinct or absent) and the blue band becoming a distinct brown band after preservation (band disappearing), caudal-fin base dark blue when fresh (yellow), a blue longitudinal band on upper caudal-fin lobe (absent), relatively long upper and lower caudal-fin lobes (relatively short), and a relatively wide marginal blue band posteriorly on caudal fin (relatively narrow). <i>Scolopsis regina</i> is distributed off northern Australia, whereas <i>S. monogramma</i> occurs in East and Southeast Asian waters.</p>","PeriodicalId":13237,"journal":{"name":"Ichthyological Research","volume":"10 1","pages":""},"PeriodicalIF":1.2,"publicationDate":"2023-12-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138547712","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Rediagnosis of Lissonanchus Smith 1966, a senior synonym of Briggsia Craig and Randall 2009 (Gobiesocidae), with notes on included species and their osteological characters","authors":"Kyoji Fujiwara, Gento Shinohara, Hiroyuki Motomura","doi":"10.1007/s10228-023-00938-w","DOIUrl":"https://doi.org/10.1007/s10228-023-00938-w","url":null,"abstract":"<p>A detailed morphological investigation, including osteological anatomy based on micro-CT scans, of two poorly known monotypic genera and species of gobiesocids, <i>Lissonanchus lusherae</i> Smith 1966 and <i>Briggsia hastingsi</i> Craig and Randall 2009, revealed that no generic-level differences existed between the two species. <i>Briggsia</i> Craig and Randall 2009, therefore, is a junior synonym of <i>Lissonanchus</i> Smith 1966. <i>Lissonanchus</i> is rediagnosed, having the following characters: 30 or 31 vertebrae; cephalic lateral-line canal pores poorly developed, including 2 nasal, 2 lacrimal and 1 postorbital canal pores; posterodorsal portion of anguloarticular strongly expanded laterally with bifurcated process; gill membranes on each side united ventrally, attached to the isthmus; 4th gill arch without filaments; double type adhesive disc; flattened papillae on disc region A continuous across center; flattened papillae on disc region D arranged along disc edge and continuous with papillae on disc region A; center of anterior disc (= middle area between disc regions A and D) lacking papillae; small fleshy pad on lower part of pectoral-fin base; anterior part of dorsal-fin base lacking a swollen fleshy appearance; general fresh coloration, including brownish-green body, dark brown strip extending from snout tip to posteroventral part of head through eye, and whitish part on lateroventral surface of head (bordered by dark brown strip). In particular, the anguloarticular feature of <i>Lissonanchus</i> is likely unique within the Gobiesocidae and is regarded as a putative autapomorphy for the genus. In contrast, the two species could be distinguished from each other by species-level differences, including counts of pectoral-fin rays, number of teeth on pharyngobranchial 3, jaw lengths, and streak patterns on the body. Accordingly, <i>Lissonanchus</i> is now considered to include two valid species: <i>L. lusherae</i> (type species) and <i>Lissonanchus hastingsi</i>, new combination. Although <i>Lissonanchus</i> was previously included in the subfamily Diademichthyinae, the genus does not share any diagnostic features of that subfamily, and the subfamilial assignment of the genus remains equivocal, like other Indo-Pacific genera considered as <i>incertae sedis</i> within the Gobiesocidae (e.g., <i>Aspasmogaster</i> Waite 1907, <i>Conidens</i> Briggs 1955, and <i>Creocele</i> Briggs 1955).</p>","PeriodicalId":13237,"journal":{"name":"Ichthyological Research","volume":"55 1","pages":""},"PeriodicalIF":1.2,"publicationDate":"2023-11-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138530346","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Reconstruction of the native distribution range of a Japanese cryptic dojo loach species (Misgurnus sp. Type I sensu Okada et al. 2017): has the Type I loach dispersed beyond the Blakiston’s Line?","authors":"Ryuya Okada, Keigo Morita, Taichiro Toyama, Yuki Yashima, Hiroshi Onozato, Keisuke Takata, Tadao Kitagawa","doi":"10.1007/s10228-023-00934-0","DOIUrl":"https://doi.org/10.1007/s10228-023-00934-0","url":null,"abstract":"","PeriodicalId":13237,"journal":{"name":"Ichthyological Research","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135635418","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Neomerinthe ignea, a new species of scorpionfish (Teleostei: Scorpaenidae) from the western Pacific Ocean, with a review of records of N. erostris (Alcock 1896)","authors":"Tatsuya Matsumoto, Nozomu Muto, Hiroyuki Motomura","doi":"10.1007/s10228-023-00931-3","DOIUrl":"https://doi.org/10.1007/s10228-023-00931-3","url":null,"abstract":"","PeriodicalId":13237,"journal":{"name":"Ichthyological Research","volume":"11 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135634224","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Fluid dynamic properties of shark caudal fin morphology and its relationship to habitats","authors":"Hiroaki Sumikawa, Yoshikazu Naraoka, Yunosuke Obayashi, Takashi Fukue, Tasuku Miyoshi","doi":"10.1007/s10228-023-00933-1","DOIUrl":"https://doi.org/10.1007/s10228-023-00933-1","url":null,"abstract":"","PeriodicalId":13237,"journal":{"name":"Ichthyological Research","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135634437","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Longitudinal structuring of stream-fish assemblages: is niche partitioning observed in two-species systems applicable to three-species systems?","authors":"Kentaro Morita, Jun-ichi Tsuboi, Genki Sahashi, Ryo Futamura, Kazutoshi Ueda, Mari Kuroki","doi":"10.1007/s10228-023-00937-x","DOIUrl":"https://doi.org/10.1007/s10228-023-00937-x","url":null,"abstract":"Abstract Longitudinal distribution and niche partitioning phenomena have been extensively reported for streams containing two salmonid species but remain poorly understood for streams containing three or more salmonid species. Herein, we examined the abiotic environmental variables and population densities of fishes, including three salmonids, in 30 reaches of the Setose River, Hokkaido, Japan, across altitudes (120–450 m) and maximum water temperature (15–26 °C) gradients to determine the distribution of major fish species in this system. The densities of white-spotted charr Salvelinus leucomaenis , southern Asian Dolly Varden Salvelinus curilus , masu salmon Oncorhynchus masou , fluvial sculpin Cottus nozawae , and stone loach Barbatula oreas varied along environmental gradients despite their wide distribution sympatrically. We further investigated the interspecific interactions between three potentially competitive salmonids, white-spotted charr, Dolly Varden, and masu salmon. We observed that in the three-species system, including upstream Dolly Varden, salmon occupied upstream areas colder than those inhabited by charr, which is contrary to the pattern reported for charr and salmon two-species systems, wherein charr are found in the colder upstream areas. In underwater observations, salmon preferred faster water velocities than charr and Dolly Varden. Dolly Varden were found exclusively on the riverbed, followed by charr, whereas salmon occurred further away from the riverbed. Analysis of the stomach contents revealed that all three salmonids depended on terrestrial insects, but only Dolly Varden consumed benthic aquatic insects. In our three-species system that included Dolly Varden (preadapted to benthos foraging), no difference was observed in the degree of terrestrial insect consumption between charr and salmon. These results are in striking contrast to the reports of charr preying on relatively more aquatic insects than those consumed by salmon in charr and salmon two-species systems. Therefore, we speculate that Dolly Varden and salmon influence interspecific interactions between charr and salmon and between charr and Dolly Varden, respectively, explaining the distinct longitudinal distribution and feeding habits observed in two- vs. three-species systems. These variant interspecific interactions among the three competing species may have driven the expansion of their sympatric zones.","PeriodicalId":13237,"journal":{"name":"Ichthyological Research","volume":"21 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135635229","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Food habits of fishes in salt marsh estuaries in the western Seto Inland Sea, Japan","authors":"Kusuto Nanjo, Shun Kawaida, Haruka Doi, Takumi Yamamori","doi":"10.1007/s10228-023-00936-y","DOIUrl":"https://doi.org/10.1007/s10228-023-00936-y","url":null,"abstract":"","PeriodicalId":13237,"journal":{"name":"Ichthyological Research","volume":"57 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135868626","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"An enigmatic internal organ discovered in pink flabby whalefish, Cetostoma regani (Teleostei: Cetomimidae)","authors":"Katsuya Kimura","doi":"10.1007/s10228-023-00932-2","DOIUrl":"https://doi.org/10.1007/s10228-023-00932-2","url":null,"abstract":"","PeriodicalId":13237,"journal":{"name":"Ichthyological Research","volume":"42 4","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135868446","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}