Fishes最新文献

{"title":"Environmental DNA Analysis in a River Detected a Possible Distribution of Fish Species Difficult to Capture","authors":"Tomoki Nakamichi, Masahiro Ono, Masatoshi Hayashi, Takahiko Okamura, Toshihiro Wada, Kenji Saitoh","doi":"10.3390/fishes8100496","DOIUrl":"https://doi.org/10.3390/fishes8100496","url":null,"abstract":"Environmental DNA (eDNA) analysis is a biological survey method that has drawn much attention in recent years. However, the results of eDNA analysis and capture surveys often do not completely match, and the validity of the eDNA analysis needs to be verified. Verification of eDNA metabarcoding was conducted in a river in Fukushima Prefecture, Japan, in comparison with capture survey data. Most of the captured species were detected, and 13 uncaptured lineages (two genera and 11 species) were detected in the eDNAs. Some rare species detected in the eDNAs were also identified, including exotic eels and an endangered yet out-of-range bitterling fish. To confirm the validity of the exotic Anguilla spp. detected in eDNAs, mitochondrial Cytb sequencing was performed on captured eel specimens. All eel specimens were sequenced as the native Anguilla japonica, indicating a small biomass of the exotic species difficult to capture. Our results clearly indicated the eDNA analysis as a powerful tool for detecting possible habitats of rare fish species without disturbance to the natural environment.","PeriodicalId":12405,"journal":{"name":"Fishes","volume":"49 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135591079","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"History and Prospects for the Sustainability and Circularity of the Windowpane Oyster Placuna placenta Fishery in the Philippines","authors":"Jessica M. Rustia, Judith P. Antonino, Ravelina R. Velasco, Marcelo A. Lima, Edwin A. Yates, David G. Fernig","doi":"10.3390/fishes8100493","DOIUrl":"https://doi.org/10.3390/fishes8100493","url":null,"abstract":"The windowpane oyster Placuna placenta lives in brackish coastal waters and has long been economically important to the Philippines because of its durable and translucent shell, which is used as a glass substitute and material for making windowpanes and handicrafts. There has been considerable degradation of the P. placenta fishery over the past decades. Moreover, there are waste and under-exploited by-products, such as the meat, which though nutritious and edible, currently has a very low value; its use is confined to dishes consumed by families in the fishing community. Historically, there have been instances of excellent practice in terms of regulating the P. placenta fishery, while in recent times, there have been local initiatives to restore this and to develop high-value food products from the meat. These initiatives have, however, never been followed through at a provincial or national level. Research on other molluscs and marine organisms highlights that these contain high-value pharmaceutical products, an unexplored facet of P. placenta. This review compiles evidence to establish the groundwork for an essential and comprehensive multidisciplinary research programme centred around the P. placenta, which would ensure a high value for all parts of the oyster, including those currently discarded. By fostering a sustainable and circular economy within this fishery sector and its associated industry, its economic value would be amplified. This is particularly important for oyster harvesters in the Philippines, who often find themselves on the economic ladder’s lower rungs. By integrating the principles of a circular economy, this initiative would not only aim to uplift the economic prospects of these harvesters, but in doing so would drive the restoration of P. placenta to its former range.","PeriodicalId":12405,"journal":{"name":"Fishes","volume":"12 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135738823","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Optimization of Live Prey Enrichment Media for Rearing Juvenile Short-Snouted Seahorse, Hippocampus hippocampus","authors":"Jorge Palma, Ricardo Lima, José Pedro Andrade, Maria João Lança","doi":"10.3390/fishes8100494","DOIUrl":"https://doi.org/10.3390/fishes8100494","url":null,"abstract":"This study aimed to determine a nutritionally adequate feeding protocol for Hippocampus hippocampus juveniles. In the experimental trial, seahorses were fed copepods from 0–7 days post-parturition (DPP) and, from 8–28 DPP, four different dietary treatments: (copepods (control diet) (Cop); microalgae-enriched Artemia with a docosahexaenoic acid (DHA)/eicosapentaenoic acid (EPA) ratio of 2:1 (ArtDHA/EPA); microalgae-enriched Artemia with a DHA/EPA ratio of 2:1 along with 5% copepods (ArtDHA/EPA5%); and with 10% copepods (ArtDHA/EPA10%)). At the end of the trial, juvenile seahorses fed Cop grew significantly more (p < 0.05) (5.1 mg d−1) than those on fish-fed diets ArtDHA/EPA5% or ArtDHA/EPA10% (3.09 and 3.07 mg d−1, respectively), or those on the fish-fed ArtDHA/EPA (1.83 mg d−1) diet, all of which performed poorly. Data suggest that feeding copepods during the first 7 DPP promotes maturation of the digestive tract of juvenile seahorses, and the addition of a limited amount of copepods to the diet improves H. hippocampus juvenile growth performance when compared with the use of Artemia as a single diet due to the improvement of the essential fatty acid profile in the diets.","PeriodicalId":12405,"journal":{"name":"Fishes","volume":"23 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135739146","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Comparative Analysis of Hepatopancreas RNA-Seq of Juvenile Grass Carp (Ctenopharyngodon idella) Fed Different Starch Diets","authors":"Jingjing Zhang, Xue Guo, Zhen Han, Letian Qu, Teng Xia, Xiangning Chen, Jianhe Xu, Zhujin Ding, Chaoqing Wei, Hanliang Cheng","doi":"10.3390/fishes8100495","DOIUrl":"https://doi.org/10.3390/fishes8100495","url":null,"abstract":"This study aimed to explore the effects of different starch source diets on the growth performance and hepatopancreas RNA-seq of grass carp. Juvenile grass carp (initial body weight of 39.4 ± 1.6 g) were fed diets containing 25% corn (CO), potato (PO), and wheat (WH) starch for 8 weeks, respectively. The weight gain ratio (WGR) was significantly lower, whereas the visceral somatic index (VSI) and feed conversion ratio (FCR) were significantly higher in the CO group than those in the PO and WH groups. These indicators did not significantly differ between the PO and WH groups. Hepatopancreas RNA-seq analysis showed that 536, 514, and 647 differentially expressed genes (DEGs) were screened out in the comparisons of PO vs. WH, PO vs. CO, and CO vs. WH. The DEGs were mainly enriched in the several known pathways involved in steroid biosynthesis, cell cycle, fatty acid metabolism, and fat digestion and absorption according to Kyoto encyclopedia of genes and genomes (KEGG) pathway enrichment analysis. The major DEGs related to lipid and carbohydrate metabolism were analyzed, in which lipogenesis-related DEGs (fasn, acc1, scd1, elovl6, and me1), fat digestion and absorption-related DEGs (fabp7, apoa1, apoa4, and pla2), and glycometabolism-related DEGs (gk, g6pd, and pepck) were down-regulated in the PO group compared with those in the CO and WH groups. Conversely, steroid synthesis-related DEGs (hmgcs, fdft1, sqle, lss, cyp51, msmo1, nsdhl, ugt, cyp1b1, and cyp7a1) were up-regulated in the PO group. These results indicate that the long-term PO ingestion could modulate hepatic lipid metabolism by reducing fatty acid biosynthesis and increasing bile acid biosynthesis. PO may be healthier in contrast to CO alone, which may not be suitable as a starch source in grass carp diet.","PeriodicalId":12405,"journal":{"name":"Fishes","volume":"64 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135743662","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Molecular Identification and Expression Analysis of an Intelectin Gene in the Yellow Catfish Pelteobagrus fulvidraco (Siluriformes: Bagridae)","authors":"Senhao Jiang, Yuting Lei, Yanxuan Li, Wanyan Sun, Ti Wang, Ruiting Ma, Qiuning Liu, Boping Tang","doi":"10.3390/fishes8100492","DOIUrl":"https://doi.org/10.3390/fishes8100492","url":null,"abstract":"Intelectins (ITLNs) are a family of calcium-dependent lectins with carbohydrate-binding capacity, are distributed across various vertebrates, and play an important role in the innate immune response against pathogen infection. The yellow catfish Pelteobagrus fulvidraco (Siluriformes: Bagridae) is an economically important fish in China. The aim of this study was to quantify the gene expression of ITLN in response to pathogen-associated molecular patterns (PAMPs) stimulation. Here, the ITLN gene of P. fulvidraco was characterized and named PfITLN. The full-length cDNA of PfITLN was 1132 bp, including a 5’-untranslated region (UTR) of 140 bp, a 3’-UTR of 110 bp, and an open reading frame (ORF) of 882 bp encoding a polypeptide of 293 amino acids, which contains a signal peptide and two fibrinogen-related domains (FReDs). PfITLN had a molecular weight of 32.39 kDa with a theoretical pI of 5.03. The deduced PfITLN amino acid sequence had 81%, 64%, and 55% homology with Ictalurus furcatus, Danio rerio, and Homo sapiens, respectively. Moreover, the predicted tertiary protein structure of PfITLN was highly similar to that of other animals, and phylogenetic analysis showed that the PfITLN protein was close to those of other Teleostei. Real-time quantitative reverse transcription-PCR (qRT-PCR) analysis showed PfITLN expression in all examined tissues, with the highest abundance seen in the liver, followed by the head kidney, spleen, trunk kidney, and muscle. After PAMP infection with lipopolysaccharide (LPS) and polyriboinosinic polyribocytidylic acid (poly I:C), the expression levels of PfITLN were significantly upregulated at different time points. These results suggested that PfITLN might be involved in innate immunity.","PeriodicalId":12405,"journal":{"name":"Fishes","volume":"19 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135893284","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Reproductive Behavior and Sexual Patterns in Two Cales, Heteroscarus acroptilus and Olisthops cyanomelas (Odacidae) at Rocky Reefs in Temperate Australia","authors":"Hiroshi Kawase, Tomoki Sunobe","doi":"10.3390/fishes8100491","DOIUrl":"https://doi.org/10.3390/fishes8100491","url":null,"abstract":"We investigated reproductive behavior and sexual patterns in two odacid fish—Rainbow cale Heteroscarus acroptilus and Herring cale Olisthops cyanomelas—inhabiting temperate reefs in Australia on the basis of underwater observations and histological studies. The males of both species established a territory and continuously courted females they encountered in the territory. The males and females went up in the water column to release gametes in pairs. We found ovarian cavities in the gonadal tissue of H. acroptilus males, suggesting that protogynous sex change occurred in this species. Dichromatism is reported in O. cyanomelas, with males having a dark blue body color while females have a brown body color; however, we found small mature males also included among brown individuals. Furthermore, we diagnosed O. cyanomelas with gonochorism, which is rare in closely related labrids. We compared the similarities and differences in reproductive behavior and sexual patterns between the two species and with labrids.","PeriodicalId":12405,"journal":{"name":"Fishes","volume":"100 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135893095","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Genetic Structure across Isolated Virginia Populations of the Endangered Candy Darter (Etheostoma osburni)","authors":"Kathryn E. McBaine, Paul L. Angermeier, Eric M. Hallerman","doi":"10.3390/fishes8100490","DOIUrl":"https://doi.org/10.3390/fishes8100490","url":null,"abstract":"Candy darter Etheostoma osburni, a federally endangered non-game fish, has been extirpated from most of its historic range in Virginia and now occurs in four isolated populations in the New River drainage. Understanding of population genetic structure will provide insights into the recent natural history of the species and can inform conservation management. Our objectives were to: characterize population genetic structure, estimate and compare effective population sizes (Ne), and use this information to infer recent population history. Variation at mitochondrial cytochrome b sequences among 150 individuals showed 10 haplotypes separated by 1–14 mutational steps, some shared and some unique to particular populations. Variation at 12 microsatellite loci among 171 individuals showed lower variation in Dismal Creek than in other populations. All populations showed evidence of having experienced a genetic bottleneck and were highly differentiated from one another based on both types of DNA markers. Population genetic structure was related to stream position in regard to the New River, suggesting that populations were once connected. Ne estimates for all populations were less than the 500 recommended to maintain evolutionary potential, but most estimates were greater than the 100 needed for use as source populations. Our findings indicate that habitat management to allow expansion of populations, and translocations to exchange genetic material among populations, may be effective tactics to promote conservation of candy darter in Virginia.","PeriodicalId":12405,"journal":{"name":"Fishes","volume":"55 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135457888","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Appropriateness Evaluation of Releasing Area for Four Marine Organisms in Stock Enhancement: A Fatty Acid Approach","authors":"Zichen Wang, Zehua Lv, Junbo Zhang","doi":"10.3390/fishes8100489","DOIUrl":"https://doi.org/10.3390/fishes8100489","url":null,"abstract":"In light of the ongoing depletion of global fishery resources, there has been a growing trend towards increasing the scope of stock enhancement activities. The objective of these efforts is to replenish the diminishing fishery resources and restore the ecological balance within marine biological communities. Nevertheless, the efficacy of the stock enhancement project has been hindered by the differential growth and environmental adaptability of released species, which can be attributed to the influence of abundant food resources. As a consequence, the project has not yielded the anticipated outcomes. One useful strategy for enhancing the efficacy of stock enhancement is the deliberate allocation of appropriate habitats for diverse released organisms. Fatty acids were extracted by the Folch method and the composition and content of muscle fatty acids were determined by gas chromatography mass spectrometry. This study examines the fatty acid composition of four commercially important species, namely, little yellow croaker (Larimichthys polyactis), red sea bream (Pagrus major), swimming crab (Portunus trituberculatus), and ridgetail white prawn (Exopalaemon carinicauda). The sum of available docosahexaenoic acid (DHA) and eicosapentaenoic acid (EPA) is employed as an indicator to assess the appropriateness of the marine environment for releasing these species (DE). The red sea bream exhibited the lowest DE value of 13.69% in the northern coastal water of the Bohai Sea, and the little yellow croaker displayed the lowest DE value of 10.91% in the southern coastal water of the Shandong Peninsula. Conversely, the DE values of other seas were comparable, averaging 20.16%. The range of the DE value of the swimming crab across various coastal waters was observed to be between 33.59% and 45.21%. The ridgetail white prawn had a DE value of 21.10% in the coastal water of Yancheng City, Jiangsu Province, as well as the southern coastal water of the Shandong Peninsula, and a DE value of 31.75% in the southern and central coastal waters of Zhejiang Province. The findings of the study indicate that the Bohai Sea and the northern region of the Yellow Sea are the appropriate stock enhancement areas for red sea bream. Similarly, the Yellow Sea and the northern part of the East China Sea are identified as suitable habitats for the little yellow croaker. The swimming crab, on the other hand, is adapted to be released in the Yellow Sea, the Bohai Sea, and the East China Sea. The north of the central part of the East China Sea is an appropriate release area for the ridgetail white prawn.","PeriodicalId":12405,"journal":{"name":"Fishes","volume":"121 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135459598","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Evaluation of the Viral Diversity of Artemia Cysts from Saline Lakes in Kazakhstan Using Viral Metagenomics Analysis","authors":"Marat Kumar, Kobey Karamendin, Zhanara Mazhibayeva, Yermukhammet Kassymbekov, Temirlan Sabyrzhan, Kuanysh Isbekov, Saule Assylbekova, Aidyn Kydyrmanov","doi":"10.3390/fishes8100487","DOIUrl":"https://doi.org/10.3390/fishes8100487","url":null,"abstract":"Artemia (brine shrimp) holds significant value as a live feed for larval fish and crustaceans, owing to their distinctive dietary requirements. However, it is vital to acknowledge that Artemia also carries potential risk as a vector of infection. We conducted a metagenomic analysis to explore the virome present in Artemia cysts collected from inland salt lakes across four distinct regions in Kazakhstan. This study identified the presence of dsDNA phages and RNA virus sequences, with a predominant representation from the Reoviridae, Nodaviridae, Dicistroviridae, Picornaviridae, Astroviridae, Tombusviridae, and Solemoviridae families. In general, this study has significantly enhanced our understanding of the virome of Artemia cysts in the saline lakes of Kazakhstan; however, the interactions between these putative viruses and brine shrimp and other aquatic animals need further research.","PeriodicalId":12405,"journal":{"name":"Fishes","volume":"60 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135387198","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Effects of Snail Bellamya purificata Farming at Different Stocking Densities on the Algal and Fungal Communities in Sediment","authors":"Yiran Hou, Mengmeng Zhou, Rui Jia, Wei Sun, Yanhong Yang, Xiongjian Huang, Bing Li, Jian Zhu","doi":"10.3390/fishes8100488","DOIUrl":"https://doi.org/10.3390/fishes8100488","url":null,"abstract":"The snail Bellamya purificata is recognized as a potential bio-remediation species, and is commonly employed in polyculture to enhance resource utilization efficiency and realize culture environment regulation. In order to enrich the microbiome studies on elucidating the ecological effects of snail B. purificata farming, we assessed the effect of B. purificata farming activities, at varying stocking densities, on the algal and fungal communities in sediment. Four experimental groups were established in our study, each corresponding to a different stocking density: 0, 234.38, 468.75, and 937.5 g/m2, represented as CON, LD, MD, and HD, respectively. High-throughput sequencing based on ITS and 23S ribosomal RNA (rRNA) genes was employed to analyze the variations in algal and fungal communities under B. purificata farming activities at different stocking densities. B. purificata farming activities had no significant effect on the alpha diversities of fungal and algal communities, but significantly altered the compositions of fungal and algal communities in sediments, especially B. purificata farming activity at low stocking density. B. purificata farming activities at low stocking density could significantly increase the relative abundances of fungal genera Paraconiothyrium and Penicillium compared with the CON group. The promoting effect diminished with increasing density. B. purificata farming activities at low or medium stocking density also could enhance the relative abundances of algal genera Microchloropsis, Scenedesmus, and Auxenochlorella. Hence, B. purificata farming activity at low stocking density might be the optimum density to enhance resource utilization efficiency and minimize environmental pollution.","PeriodicalId":12405,"journal":{"name":"Fishes","volume":"84 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135421133","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}