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Japanese Journal of Lactic Acid Bacteria最新文献

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Bifidobacterial key genetic factors for development of infant gut ecosystems 双歧杆菌是婴儿肠道生态系统发育的关键遗传因子
Japanese Journal of Lactic Acid Bacteria Pub Date : 2018-03-10 DOI: 10.4109/JSLAB.29.19
H. Matsumoto, T. Matsuki
{"title":"Bifidobacterial key genetic factors for development of infant gut ecosystems","authors":"H. Matsumoto, T. Matsuki","doi":"10.4109/JSLAB.29.19","DOIUrl":"https://doi.org/10.4109/JSLAB.29.19","url":null,"abstract":"","PeriodicalId":117947,"journal":{"name":"Japanese Journal of Lactic Acid Bacteria","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2018-03-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128116935","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bifidobacterium animalis subsp. lactis GCL2505 の腸管内での増殖性と抗メタボリックシンドローム作用メカニズム Bifidobacterium animalis subsp. lactis GCL2505肠道内的增生性和抗代谢综合征作用机制
Japanese Journal of Lactic Acid Bacteria Pub Date : 2018-03-10 DOI: 10.4109/JSLAB.29.26
R. Aoki
{"title":"Bifidobacterium animalis subsp. lactis GCL2505 の腸管内での増殖性と抗メタボリックシンドローム作用メカニズム","authors":"R. Aoki","doi":"10.4109/JSLAB.29.26","DOIUrl":"https://doi.org/10.4109/JSLAB.29.26","url":null,"abstract":"","PeriodicalId":117947,"journal":{"name":"Japanese Journal of Lactic Acid Bacteria","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2018-03-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116959388","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Factors involved in the interaction between Bifidobacterium and the host mucosal surface 双歧杆菌与宿主粘膜表面相互作用的相关因素
Japanese Journal of Lactic Acid Bacteria Pub Date : 2018-03-10 DOI: 10.4109/JSLAB.29.13
Keita Nishiyama, T. Mukai
{"title":"Factors involved in the interaction between Bifidobacterium and the host mucosal surface","authors":"Keita Nishiyama, T. Mukai","doi":"10.4109/JSLAB.29.13","DOIUrl":"https://doi.org/10.4109/JSLAB.29.13","url":null,"abstract":"The human gut microbiome includes commensal bacteria from genus Bifidobacterium, which primarily colonizes the region from the small intestine to the colon. This region has a mucus layer composed mainly of mucin glycoproteins. In addition to providing a habitat for the microbiota, the mucus is also a potential glycan source. Therefore, interaction with mucus could provide a competitive advantage for Bifidobacterium within the gut ecosystem. In this review, we first outline the role of Bifidobacterium extracellular proteins in bacterium-mucus interactions, and then we focus on extracellular glycoside hydrolases and a recently discovered pilus-mediated colonization process unique","PeriodicalId":117947,"journal":{"name":"Japanese Journal of Lactic Acid Bacteria","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2018-03-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"117305876","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
次世代シーケンサーデータの解析手法 第 11 回 統合データ解析環境 Galaxy 第11次综合数据分析环境Galaxy
Japanese Journal of Lactic Acid Bacteria Pub Date : 2017-11-10 DOI: 10.4109/JSLAB.28.167
達郎 大田, 朋子 寺田, 清水 謙多郎, 幸二 門田
{"title":"次世代シーケンサーデータの解析手法 第 11 回 統合データ解析環境 Galaxy","authors":"達郎 大田, 朋子 寺田, 清水 謙多郎, 幸二 門田","doi":"10.4109/JSLAB.28.167","DOIUrl":"https://doi.org/10.4109/JSLAB.28.167","url":null,"abstract":"","PeriodicalId":117947,"journal":{"name":"Japanese Journal of Lactic Acid Bacteria","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2017-11-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"122772650","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Isolation and application of lactic acid bacteria and yeasts from coastal “ Satoumi ” environments 沿海“Satoumi”环境中乳酸菌和酵母的分离与应用
Japanese Journal of Lactic Acid Bacteria Pub Date : 2017-06-27 DOI: 10.4109/JSLAB.28.51
T. Kuda
{"title":"Isolation and application of lactic acid bacteria and yeasts from coastal “ Satoumi ” environments","authors":"T. Kuda","doi":"10.4109/JSLAB.28.51","DOIUrl":"https://doi.org/10.4109/JSLAB.28.51","url":null,"abstract":"","PeriodicalId":117947,"journal":{"name":"Japanese Journal of Lactic Acid Bacteria","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2017-06-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129328240","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Novel fatty acid metabolism in lactic acid bacteria and the physiological function of metabolites 乳酸菌的新型脂肪酸代谢及其代谢产物的生理功能
Japanese Journal of Lactic Acid Bacteria Pub Date : 2017-06-26 DOI: 10.4109/JSLAB.28.58
S. Kishino, J. Ogawa
{"title":"Novel fatty acid metabolism in lactic acid bacteria and the physiological function of metabolites","authors":"S. Kishino, J. Ogawa","doi":"10.4109/JSLAB.28.58","DOIUrl":"https://doi.org/10.4109/JSLAB.28.58","url":null,"abstract":"","PeriodicalId":117947,"journal":{"name":"Japanese Journal of Lactic Acid Bacteria","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2017-06-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121883130","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dynamism and diversity of human gut microbial community 人类肠道微生物群落的动态和多样性
Japanese Journal of Lactic Acid Bacteria Pub Date : 2017-06-26 DOI: 10.4109/JSLAB.28.74
Ayaka Uchikawa, Masaru Tanaka, J. Nakayama
{"title":"Dynamism and diversity of human gut microbial community","authors":"Ayaka Uchikawa, Masaru Tanaka, J. Nakayama","doi":"10.4109/JSLAB.28.74","DOIUrl":"https://doi.org/10.4109/JSLAB.28.74","url":null,"abstract":"","PeriodicalId":117947,"journal":{"name":"Japanese Journal of Lactic Acid Bacteria","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2017-06-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128838070","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Transition and diversity of bacterial flora found in traditional fermented foods 传统发酵食品中细菌菌群的转变和多样性
Japanese Journal of Lactic Acid Bacteria Pub Date : 2017-06-26 DOI: 10.4109/JSLAB.28.84
T. Koyanagi
{"title":"Transition and diversity of bacterial flora found in traditional fermented foods","authors":"T. Koyanagi","doi":"10.4109/JSLAB.28.84","DOIUrl":"https://doi.org/10.4109/JSLAB.28.84","url":null,"abstract":"Many fermented foods are produced in Japan, and the preparation conditions are set very carefully so that strict microbial control can be carried out. Even the manufacturing methods of them have been developed empirically, specific microorganism is established to be reproduced well in the fermentation medium of each food from ancient times. Although the history of bacterial flora research of fermented foods is old, it has become possible to obtain more detailed information by development of high-throughput 16S rRNA gene analysis using next-generation sequencing. Analysis of the bacterial flora of the fermented food of Ishikawa prefecture, Japan, showed that various bacterial species are intermingled among the fermented products, and that sometimes different kinds of bacteria became dominant even for the same type of food. Lactobacillus sakei, which is known as the predominant lactic acid bacterium in Japanese sake starter, prominently proliferated in “kaburazushi” that contains rice koji, which is a shared ingredient among the both foods. Six “narezushi” products obtained from Noto peninsula were found to be dominated by various Lactobacillus and Pediococcus species. In “yamahai-moto”, nitrate-reducing bacteria normally found in the early stage of fermentation was hardly detected, while Lactobacillus acidipiscis was present at the stage. This review illustrates, through introducing several case studies, how the bacterial flora of fermented foods are robustly and/or variably controlled to achieve the final dominance of lactic","PeriodicalId":117947,"journal":{"name":"Japanese Journal of Lactic Acid Bacteria","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2017-06-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124908403","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Methods for analyzing next-generation sequencing data X. Registration to DDBJ through Mass Submission System 新一代测序数据分析方法X.通过批量提交系统注册到DDBJ
Japanese Journal of Lactic Acid Bacteria Pub Date : 2017-06-26 DOI: 10.4109/JSLAB.28.94
Yasuhiro Tanizawa, T. Fujisawa, J. Mashima, Kyungbum Lee, M. Tohno, M. Sakamoto, M. Ohkuma, Yasukazu Nakamura, K. Shimizu, K. Kadota
{"title":"Methods for analyzing next-generation sequencing data X. Registration to DDBJ through Mass Submission System","authors":"Yasuhiro Tanizawa, T. Fujisawa, J. Mashima, Kyungbum Lee, M. Tohno, M. Sakamoto, M. Ohkuma, Yasukazu Nakamura, K. Shimizu, K. Kadota","doi":"10.4109/JSLAB.28.94","DOIUrl":"https://doi.org/10.4109/JSLAB.28.94","url":null,"abstract":"The International Nucleotide Sequence Database Collaboration (INSDC) has maintained a primary sequence database that collects experimentally-determined nucleotide sequence data directly from researchers. Now data deposition to the INSDC is mandatory for research publication at most of the scientific journals. However, the procedure to deposit data to the INSDC is a big burden, especially for those who are not familiar with computer skills. Recently, we have developed a genome annotation pipeline DFAST, which also assists data deposition to the INSDC. In this article, we show the instruction to deposit annotated genome sequence data using the DFAST web service. Supplementary materials are available at our web site, http://www.iu.a.u-tokyo.ac.jp/~kadota/r_seq.html#about_book_ JSLAB.","PeriodicalId":117947,"journal":{"name":"Japanese Journal of Lactic Acid Bacteria","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2017-06-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124769833","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Lactobacillus rhamnosus GG 株の摂取による便秘傾向な女性の排便および皮膚に及ぼす影響 服用Lactobacillus rhamnosus GG植株对有便秘倾向的女性的排便和皮肤的影响
Japanese Journal of Lactic Acid Bacteria Pub Date : 2017-03-10 DOI: 10.4109/JSLAB.28.12
K. Miyazawa, Kazutoyo Yoda, Gaku Harata, Megumi Ida, Ichiro Hirayama, Fang He, Masaru Hiramatsu
{"title":"Lactobacillus rhamnosus GG 株の摂取による便秘傾向な女性の排便および皮膚に及ぼす影響","authors":"K. Miyazawa, Kazutoyo Yoda, Gaku Harata, Megumi Ida, Ichiro Hirayama, Fang He, Masaru Hiramatsu","doi":"10.4109/JSLAB.28.12","DOIUrl":"https://doi.org/10.4109/JSLAB.28.12","url":null,"abstract":"","PeriodicalId":117947,"journal":{"name":"Japanese Journal of Lactic Acid Bacteria","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2017-03-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129683468","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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