Circulation: Genomic and Precision Medicine最新文献

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Network Preservation Analysis Reveals Dysregulated Metabolic Pathways in Human Vascular Smooth Muscle Cell Phenotypic Switching. 网络保存分析揭示了人类血管平滑肌细胞表型转换中代谢途径的失调。
IF 7.4 2区 医学
Circulation: Genomic and Precision Medicine Pub Date : 2023-08-01 Epub Date: 2023-06-30 DOI: 10.1161/CIRCGEN.122.003781
R Noah Perry, Diana Albarracin, Redouane Aherrahrou, Mete Civelek
{"title":"Network Preservation Analysis Reveals Dysregulated Metabolic Pathways in Human Vascular Smooth Muscle Cell Phenotypic Switching.","authors":"R Noah Perry,&nbsp;Diana Albarracin,&nbsp;Redouane Aherrahrou,&nbsp;Mete Civelek","doi":"10.1161/CIRCGEN.122.003781","DOIUrl":"10.1161/CIRCGEN.122.003781","url":null,"abstract":"<p><strong>Background: </strong>Vascular smooth muscle cells are key players involved in atherosclerosis, the underlying cause of coronary artery disease. They can play either beneficial or detrimental roles in lesion pathogenesis, depending on the nature of their phenotypic changes. An in-depth characterization of their gene regulatory networks can help better understand how their dysfunction may impact disease progression.</p><p><strong>Methods: </strong>We conducted a gene expression network preservation analysis in aortic smooth muscle cells isolated from 151 multiethnic heart transplant donors cultured under quiescent or proliferative conditions.</p><p><strong>Results: </strong>We identified 86 groups of coexpressed genes (modules) across the 2 conditions and focused on the 18 modules that are least preserved between the phenotypic conditions. Three of these modules were significantly enriched for genes belonging to proliferation, migration, cell adhesion, and cell differentiation pathways, characteristic of phenotypically modulated proliferative vascular smooth muscle cells. The majority of the modules, however, were enriched for metabolic pathways consisting of both nitrogen-related and glycolysis-related processes. Therefore, we explored correlations between nitrogen metabolism-related genes and coronary artery disease-associated genes and found significant correlations, suggesting the involvement of the nitrogen metabolism pathway in coronary artery disease pathogenesis. We also created gene regulatory networks enriched for genes in glycolysis and predicted key regulatory genes driving glycolysis dysregulation.</p><p><strong>Conclusions: </strong>Our work suggests that dysregulation of vascular smooth muscle cell metabolism participates in phenotypic transitioning, which may contribute to disease progression, and suggests that AMT (aminomethyltransferase) and MPI (mannose phosphate isomerase) may play an important role in regulating nitrogen and glycolysis-related metabolism in smooth muscle cells.</p>","PeriodicalId":10326,"journal":{"name":"Circulation: Genomic and Precision Medicine","volume":null,"pages":null},"PeriodicalIF":7.4,"publicationDate":"2023-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/3a/27/hcg-16-372.PMC10434832.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10419243","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
In Memoriam: Prof. Dr. Jeanette Erdmann (1965-2023). 纪念:Jeanette Erdmann教授博士(1965-2023)。
IF 7.4 2区 医学
Circulation: Genomic and Precision Medicine Pub Date : 2023-08-01 DOI: 10.1161/CIRCGEN.123.004315
Heribert Schunkert, Zouhair Aherrahrou
{"title":"In Memoriam: Prof. Dr. Jeanette Erdmann (1965-2023).","authors":"Heribert Schunkert,&nbsp;Zouhair Aherrahrou","doi":"10.1161/CIRCGEN.123.004315","DOIUrl":"https://doi.org/10.1161/CIRCGEN.123.004315","url":null,"abstract":"","PeriodicalId":10326,"journal":{"name":"Circulation: Genomic and Precision Medicine","volume":null,"pages":null},"PeriodicalIF":7.4,"publicationDate":"2023-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10386689","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Natural History of Hypertrophic Cardiomyopathy in Noonan Syndrome With Multiple Lentigines. 努南综合征伴多发性皮纹的肥厚型心肌病的自然病史
IF 7.4 2区 医学
Circulation: Genomic and Precision Medicine Pub Date : 2023-08-01 Epub Date: 2023-05-18 DOI: 10.1161/CIRCGEN.122.003861
Emanuele Monda, Aaron Prosnitz, Rossella Aiello, Michele Lioncino, Gabrielle Norrish, Martina Caiazza, Fabrizio Drago, Meaghan Beattie, Marco Tartaglia, Maria Giovanna Russo, Steven D Colan, Giulio Calcagni, Bruce D Gelb, Juan Pablo Kaski, Amy E Roberts, Giuseppe Limongelli
{"title":"Natural History of Hypertrophic Cardiomyopathy in Noonan Syndrome With Multiple Lentigines.","authors":"Emanuele Monda, Aaron Prosnitz, Rossella Aiello, Michele Lioncino, Gabrielle Norrish, Martina Caiazza, Fabrizio Drago, Meaghan Beattie, Marco Tartaglia, Maria Giovanna Russo, Steven D Colan, Giulio Calcagni, Bruce D Gelb, Juan Pablo Kaski, Amy E Roberts, Giuseppe Limongelli","doi":"10.1161/CIRCGEN.122.003861","DOIUrl":"10.1161/CIRCGEN.122.003861","url":null,"abstract":"<p><strong>Background: </strong>We aimed to examine clinical features and outcomes of consecutive molecularly characterized patients with Noonan syndrome with multiple lentigines and hypertrophic cardiomyopathy.</p><p><strong>Methods: </strong>A retrospective, longitudinal multicenter cohort of consecutive children and adults with a genetic diagnosis of Noonan syndrome with multiple lentigines and hypertrophic cardiomyopathy between 2002 and 2019 was assembled. We defined a priori 3 different patterns of left ventricular remodeling during follow-up: (1) an increase in ≥15% of the maximal left ventricular wall thickness (MLVWT), both in mm and <i>z</i>-score (progression); (2) a reduction ≥15% of the MLVWT, both in mm and <i>z</i>-score (absolute regression); (3) a reduction ≥15% of the MLVWT <i>z</i>-score with a stable MLVWT in mm (relative regression). The primary study end point was a composite of cardiovascular death, heart transplantation, and appropriate implantable cardioverter defibrillator-shock.</p><p><strong>Results: </strong>The cohort comprised 42 patients with Noonan syndrome with multiple lentigines and hypertrophic cardiomyopathy, with a median age at diagnosis of 3.5 (interquartile range, 0.2-12.3) years. Freedom from primary end point was 92.7% (95% CI, 84.7%-100%) 1 year after presentation and 80.9% (95% CI, 70.1%-90.7%) at 5 years. Patients with MLVWT <i>z</i>-score >13.7 showed reduced survival compared with those with <13.7. During a median follow-up of 3.7 years (interquartile range, 2.6-7.9), absolute regression was the most common type of left ventricular remodeling (n=9, 31%), followed by progression (n=6, 21%), and relative regression (n=6, 21%).</p><p><strong>Conclusions: </strong>These findings provide insights into the natural history of left ventricular hypertrophy, and can help inform clinicians regarding risk stratification and clinical outcomes in patients with Noonan syndrome with multiple lentigines and hypertrophic cardiomyopathy.</p>","PeriodicalId":10326,"journal":{"name":"Circulation: Genomic and Precision Medicine","volume":null,"pages":null},"PeriodicalIF":7.4,"publicationDate":"2023-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10034467","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Combined Clinical, Molecular, and Muscle Biopsy Approach to Unveil Prevalence and Clinical Features of Rare Neuromuscular and Mitochondrial Diseases in Patients With Cardiomyopathies. 结合临床、分子和肌肉活检方法揭示心肌病患者罕见神经肌肉和线粒体疾病的患病率和临床特征。
IF 7.4 2区 医学
Circulation: Genomic and Precision Medicine Pub Date : 2023-08-01 DOI: 10.1161/CIRCGEN.123.004122
Michele Lioncino, Emanuele Monda, Martina Caiazza, Vincenzo Simonelli, Claudia Nesti, Alfredo Mauriello, Alberta Budillon, Alessandro Di Santo, Giorgia Bruno, Antonio Varone, Vincenzo Nigro, Filippo Maria Santorelli, Giuseppe Pacileo, Maria Giovanna Russo, Giulia Frisso, Simone Sampaolo, Giuseppe Limongelli
{"title":"Combined Clinical, Molecular, and Muscle Biopsy Approach to Unveil Prevalence and Clinical Features of Rare Neuromuscular and Mitochondrial Diseases in Patients With Cardiomyopathies.","authors":"Michele Lioncino,&nbsp;Emanuele Monda,&nbsp;Martina Caiazza,&nbsp;Vincenzo Simonelli,&nbsp;Claudia Nesti,&nbsp;Alfredo Mauriello,&nbsp;Alberta Budillon,&nbsp;Alessandro Di Santo,&nbsp;Giorgia Bruno,&nbsp;Antonio Varone,&nbsp;Vincenzo Nigro,&nbsp;Filippo Maria Santorelli,&nbsp;Giuseppe Pacileo,&nbsp;Maria Giovanna Russo,&nbsp;Giulia Frisso,&nbsp;Simone Sampaolo,&nbsp;Giuseppe Limongelli","doi":"10.1161/CIRCGEN.123.004122","DOIUrl":"https://doi.org/10.1161/CIRCGEN.123.004122","url":null,"abstract":"","PeriodicalId":10326,"journal":{"name":"Circulation: Genomic and Precision Medicine","volume":null,"pages":null},"PeriodicalIF":7.4,"publicationDate":"2023-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10041428","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Clinical Outcomes and Genetic Analyses of Restrictive Cardiomyopathy in Children. 儿童限制性心肌病的临床结局和遗传分析。
IF 7.4 2区 医学
Circulation: Genomic and Precision Medicine Pub Date : 2023-08-01 DOI: 10.1161/CIRCGEN.122.004054
Hidekazu Ishida, Jun Narita, Ryo Ishii, Hidehiro Suginobe, Hirofumi Tsuru, Renjie Wang, Chika Yoshihara, Atsuko Ueyama, Kazutoshi Ueda, Masaki Hirose, Kazuhisa Hashimoto, Hiroki Nagano, Shigetoyo Kogaki, Yuki Kuramoto, Yohei Miyashita, Yoshihiro Asano, Keiichi Ozono
{"title":"Clinical Outcomes and Genetic Analyses of Restrictive Cardiomyopathy in Children.","authors":"Hidekazu Ishida,&nbsp;Jun Narita,&nbsp;Ryo Ishii,&nbsp;Hidehiro Suginobe,&nbsp;Hirofumi Tsuru,&nbsp;Renjie Wang,&nbsp;Chika Yoshihara,&nbsp;Atsuko Ueyama,&nbsp;Kazutoshi Ueda,&nbsp;Masaki Hirose,&nbsp;Kazuhisa Hashimoto,&nbsp;Hiroki Nagano,&nbsp;Shigetoyo Kogaki,&nbsp;Yuki Kuramoto,&nbsp;Yohei Miyashita,&nbsp;Yoshihiro Asano,&nbsp;Keiichi Ozono","doi":"10.1161/CIRCGEN.122.004054","DOIUrl":"https://doi.org/10.1161/CIRCGEN.122.004054","url":null,"abstract":"<p><strong>Background: </strong>Restrictive cardiomyopathy in children is rare and outcomes are very poor. However, little information is available concerning genotype-outcome correlations.</p><p><strong>Methods: </strong>We analyzed the clinical characteristics and genetic testing, including whole exome sequencing, of 28 pediatric restrictive cardiomyopathy patients who were diagnosed from 1998 to 2021 at Osaka University Hospital in Japan.</p><p><strong>Results: </strong>The median age at diagnosis (interquartile range) was 6 (2.25-8.5) years. Eighteen patients received heart transplantations and 5 patients were on the waiting list. One patient died while waiting for transplantation. Pathologic or likely-pathogenic variants were identified in 14 of the 28 (50%) patients, including heterozygous <i>TNNI3</i> missense variants in 8 patients. <i>TNNT2</i>, <i>MYL2</i>, and <i>FLNC</i> missense variants were also identified. No significant differences in clinical manifestations and hemodynamic parameters between positive and negative pathogenic variants were detected. However, 2- and 5-year survival rates were significantly lower in patients with pathogenic variants (50% and 22%) compared with survival in patients without pathogenic variants (62% and 54%; <i>P</i>=0.0496, log-rank test). No significant differences were detected in the ratio of patients diagnosed at nationwide school heart disease screening program between positive and negative pathogenic variants. Patients diagnosed by school screening showed better transplant-free survival compared with patients diagnosed by heart failure symptoms (<i>P</i>=0.0027 in log-rank test).</p><p><strong>Conclusions: </strong>In this study, 50% of pediatric restrictive cardiomyopathy patients had pathogenic or likely-pathogenic gene variants, and <i>TNNI3</i> missense variants were the most frequent. Patients with pathogenic variants showed significantly lower transplant-free survival compared with patients without pathogenic variants.</p>","PeriodicalId":10326,"journal":{"name":"Circulation: Genomic and Precision Medicine","volume":null,"pages":null},"PeriodicalIF":7.4,"publicationDate":"2023-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10042004","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
DiscoVari: A Web-Based Precision Medicine Tool for Predicting Variant Pathogenicity in Cardiomyopathy- and Channelopathy-Associated Genes. DiscoVari:一种基于Web的精确医学工具,用于预测心肌病和血管病相关基因的变异致病性。
IF 6 2区 医学
Circulation: Genomic and Precision Medicine Pub Date : 2023-08-01 Epub Date: 2023-07-06 DOI: 10.1161/CIRCGEN.122.003911
Leonie M Kurzlechner, Sujata Kishnani, Shawon Chowdhury, Sage L Atkins, Mary E Moya-Mendez, Lauren E Parker, Michael B Rosamilia, Hanna J Tadros, Leslie A Pace, Viraj Patel, C Anwar A Chahal, Andrew P Landstrom
{"title":"<i>DiscoVari</i>: A Web-Based Precision Medicine Tool for Predicting Variant Pathogenicity in Cardiomyopathy- and Channelopathy-Associated Genes.","authors":"Leonie M Kurzlechner, Sujata Kishnani, Shawon Chowdhury, Sage L Atkins, Mary E Moya-Mendez, Lauren E Parker, Michael B Rosamilia, Hanna J Tadros, Leslie A Pace, Viraj Patel, C Anwar A Chahal, Andrew P Landstrom","doi":"10.1161/CIRCGEN.122.003911","DOIUrl":"10.1161/CIRCGEN.122.003911","url":null,"abstract":"<p><strong>Background: </strong>With genetic testing advancements, the burden of incidentally identified cardiac disease-associated gene variants is rising. These variants may carry a risk of sudden cardiac death, highlighting the need for accurate diagnostic interpretation. We sought to identify pathogenic hotspots in sudden cardiac death-associated genes using amino acid-level signal-to-noise (S:N) analysis and develop a web-based precision medicine tool, <i>DiscoVari</i>, to improve variant evaluation.</p><p><strong>Methods: </strong>The minor allele frequency of putatively pathogenic variants was derived from cohort-based cardiomyopathy and channelopathy studies in the literature. We normalized disease-associated minor allele frequencies to rare variants in an ostensibly healthy population (Genome Aggregation Database) to calculate amino acid-level S:N. Amino acids with S:N above the gene-specific threshold were defined as hotspots. <i>DiscoVari</i> was built using JavaScript ES6 and using open-source JavaScript library ReactJS, web development framework Next.js, and JavaScript runtime NodeJS. We validated the ability of <i>DiscoVari</i> to identify pathogenic variants using variants from ClinVar and individuals clinically evaluated at the Duke University Hospitals with cardiac genetic testing.</p><p><strong>Results: </strong>We developed <i>DiscoVari</i> as an internet-based tool for S:N-based variant hotspots. Upon validation, a higher proportion of ClinVar likely pathogenic/pathogenic variants localized to <i>DiscoVari</i> hotspots (43.1%) than likely benign/benign variants (17.8%; <i>P<</i>0.0001). Further, 75.3% of ClinVar variants reclassified to likely pathogenic/pathogenic were in hotspots, compared with 41.3% of those reclassified as variants of uncertain significance (<i>P<</i>0.0001) and 23.4% of those reclassified as likely benign/benign (<i>P</i><0.0001). Of the clinical cohort variants, 73.1% of likely pathogenic/pathogenic were in hotspots, compared with 0.0% of likely benign/benign (<i>P<</i>0.01).</p><p><strong>Conclusions: </strong><i>DiscoVari</i> reliably identifies disease-susceptible amino acid residues to evaluate variants by searching amino acid-specific S:N ratios.</p>","PeriodicalId":10326,"journal":{"name":"Circulation: Genomic and Precision Medicine","volume":null,"pages":null},"PeriodicalIF":6.0,"publicationDate":"2023-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10527712/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10419259","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Clinical Outcome in KLHL24 Cardiomyopathy. KLHL24心肌病的临床结局。
IF 7.4 2区 医学
Circulation: Genomic and Precision Medicine Pub Date : 2023-08-01 DOI: 10.1161/CIRCGEN.122.003998
Mathilde C S C Vermeer, Karla F Arevalo Gomez, Martijn F Hoes, Jasper Tromp, Job A J Verdonschot, Michiel T H M Henkens, Herman H W Silljé, Maria C Bolling, Peter van der Meer
{"title":"Clinical Outcome in <i>KLHL24</i> Cardiomyopathy.","authors":"Mathilde C S C Vermeer,&nbsp;Karla F Arevalo Gomez,&nbsp;Martijn F Hoes,&nbsp;Jasper Tromp,&nbsp;Job A J Verdonschot,&nbsp;Michiel T H M Henkens,&nbsp;Herman H W Silljé,&nbsp;Maria C Bolling,&nbsp;Peter van der Meer","doi":"10.1161/CIRCGEN.122.003998","DOIUrl":"https://doi.org/10.1161/CIRCGEN.122.003998","url":null,"abstract":"Pathogenic variants in Kelch-like family member 24 (KLHL24; NM_017644.3) were recently identified as a new cause for skin fragility and cardiomyopathy. KLHL24 is part of a ubiquitin-ligase complex and mediates substrate recognition of intermediate filaments for proteasomal degradation (ie, keratins,1,2 vimentin,2 and desmin3,4). Several studies have shown that patients with heterozygous gain-of-function variants (HET-GOF), typically born with epidermolysis bullosa simplex,1,2 can develop dilated cardiomyopathy (DCM) with desmin-deficiency.3 Meanwhile, hypertrophic cardiomyopathy (HCM) with desmin-overload has been determined in patients with homozygous loss-of-function variants (HOM-LOF).4 This meta-analysis aims to summarize the findings of previous patient studies to determine the clinical outcome in KLHL24 cardiomyopathy. Observational studies (2016–2022) on KLHL24 found in PUBMED were included in this analysis. The data are available from the corresponding authors upon reasonable request. Meanwhile, an Institutional Review Board approval for this study was not required, as this is a meta-analysis. Patients were stratified according to their genotype (HOM-LOF and HET-GOF) and the study outcomes were cardiomyopathy diagnosis and cardiovascular events. Cardiovascular events were defined as sudden cardiac death, death from heart failure, or heart transplantation. Kaplan-Meier curves were constructed to visualize the age at diagnosis and cardiovascular event free-survival. For the HET-GOF group, this analysis was stratified by sex, and log-rank testing was used to test for significant differences in the distribution. To achieve between-group balance, the sex-stratified Kaplan-Meier curves were weighted for age and cohort. In total, 73 patients from 14 studies were included in this analysis, and Figure (A) shows their geographic distribution. In general, patients had a median age (interquartile range) of 18 (7–33) years, at the time of the respected study publication. Fifty-three percent were men, 38% were diagnosed with cardiomyopathy, and 84% were patients with HET-GOF variants. Patients with HOM-LOF variants had a median age of 27 (26– 31) years, and 55% were male (Figure [B]). HOM-LOF variants c.917G>A (p.[Arg306His]) and c.1048G>T (p.[Glu350*]) segregated in 2 Middle-Eastern families, reporting 11 patients born from seemingly unaffected consanguineous heterozygous parents. All patients with HOM-LOF were diagnosed with HCM before the age of 32 (27 [26–31]; Figure [C]), resulting in 4 cardiovascular events (sudden cardiac death n=3; heart transplantation n=1; Figure [D]). Patients with HET-GOF variants have a median age of 14 [6–33] and 53% were men (Figure [B]). HET-GOF variants c.1A>G, c.1A>T, c.2T>C, c.3G>T, c.3G>A and c.22A>T (p.[Val2_Met29del]) segregated with disease in 34 families, reporting 62 patients in 14 countries. All patients with HET-GOF had epidermolysis bullosa simplex at birth, and 27% were diagnosed with DCM. The probability o","PeriodicalId":10326,"journal":{"name":"Circulation: Genomic and Precision Medicine","volume":null,"pages":null},"PeriodicalIF":7.4,"publicationDate":"2023-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10428098/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10046229","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Genetic Susceptibility to Atrial Fibrillation Identified via Deep Learning of 12-Lead Electrocardiograms. 通过12导联心电图的深度学习确定心房颤动的遗传易感性。
IF 6 2区 医学
Circulation: Genomic and Precision Medicine Pub Date : 2023-08-01 Epub Date: 2023-06-06 DOI: 10.1161/CIRCGEN.122.003808
Xin Wang, Shaan Khurshid, Seung Hoan Choi, Samuel Friedman, Lu-Chen Weng, Christopher Reeder, James P Pirruccello, Pulkit Singh, Emily S Lau, Rachael Venn, Nate Diamant, Paolo Di Achille, Anthony Philippakis, Christopher D Anderson, Jennifer E Ho, Patrick T Ellinor, Puneet Batra, Steven A Lubitz
{"title":"Genetic Susceptibility to Atrial Fibrillation Identified via Deep Learning of 12-Lead Electrocardiograms.","authors":"Xin Wang, Shaan Khurshid, Seung Hoan Choi, Samuel Friedman, Lu-Chen Weng, Christopher Reeder, James P Pirruccello, Pulkit Singh, Emily S Lau, Rachael Venn, Nate Diamant, Paolo Di Achille, Anthony Philippakis, Christopher D Anderson, Jennifer E Ho, Patrick T Ellinor, Puneet Batra, Steven A Lubitz","doi":"10.1161/CIRCGEN.122.003808","DOIUrl":"10.1161/CIRCGEN.122.003808","url":null,"abstract":"<p><strong>Background: </strong>Artificial intelligence (AI) models applied to 12-lead ECG waveforms can predict atrial fibrillation (AF), a heritable and morbid arrhythmia. However, the factors forming the basis of risk predictions from AI models are usually not well understood. We hypothesized that there might be a genetic basis for an AI algorithm for predicting the 5-year risk of new-onset AF using 12-lead ECGs (ECG-AI)-based risk estimates.</p><p><strong>Methods: </strong>We applied a validated ECG-AI model for predicting incident AF to ECGs from 39 986 UK Biobank participants without AF. We then performed a genome-wide association study (GWAS) of the predicted AF risk and compared it with an AF GWAS and a GWAS of risk estimates from a clinical variable model.</p><p><strong>Results: </strong>In the ECG-AI GWAS, we identified 3 signals (<i>P</i><5×10<sup>-8</sup>) at established AF susceptibility loci marked by the sarcomeric gene <i>TTN</i> and sodium channel genes <i>SCN5A</i> and <i>SCN10A</i>. We also identified 2 novel loci near the genes <i>VGLL2</i> and <i>EXT1</i>. In contrast, the clinical variable model prediction GWAS indicated a different genetic profile. In genetic correlation analysis, the prediction from the ECG-AI model was estimated to have a higher correlation with AF than that from the clinical variable model.</p><p><strong>Conclusions: </strong>Predicted AF risk from an ECG-AI model is influenced by genetic variation implicating sarcomeric, ion channel and body height pathways. ECG-AI models may identify individuals at risk for disease via specific biological pathways.</p>","PeriodicalId":10326,"journal":{"name":"Circulation: Genomic and Precision Medicine","volume":null,"pages":null},"PeriodicalIF":6.0,"publicationDate":"2023-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10524395/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10046687","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Novel Insights Into the Prevalence of TNNI3K-Mediated Dilated Cardiomyopathy and Putative Disease Mechanisms. tnni3k介导的扩张型心肌病患病率和推测的疾病机制的新见解。
IF 7.4 2区 医学
Circulation: Genomic and Precision Medicine Pub Date : 2023-08-01 DOI: 10.1161/CIRCGEN.123.004207
Marina Rieder, Christiane Zweier, Katja E Odening
{"title":"Novel Insights Into the Prevalence of <i>TNNI3K</i>-Mediated Dilated Cardiomyopathy and Putative Disease Mechanisms.","authors":"Marina Rieder,&nbsp;Christiane Zweier,&nbsp;Katja E Odening","doi":"10.1161/CIRCGEN.123.004207","DOIUrl":"https://doi.org/10.1161/CIRCGEN.123.004207","url":null,"abstract":"","PeriodicalId":10326,"journal":{"name":"Circulation: Genomic and Precision Medicine","volume":null,"pages":null},"PeriodicalIF":7.4,"publicationDate":"2023-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10044787","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Long-Term Prevalence of Systolic Dysfunction in MYBPC3 Versus MYH7-Related Hypertrophic Cardiomyopathy. MYBPC3与myh7相关肥厚性心肌病患者收缩功能障碍的长期患病率
IF 7.4 2区 医学
Circulation: Genomic and Precision Medicine Pub Date : 2023-08-01 DOI: 10.1161/CIRCGEN.122.003832
Matteo Beltrami, Elisa Fedele, Carlo Fumagalli, Francesco Mazzarotto, Francesca Girolami, Cecilia Ferrantini, Raffaele Coppini, Lorenzo Tofani, Bruno Bertaccini, Corrado Poggesi, Iacopo Olivotto
{"title":"Long-Term Prevalence of Systolic Dysfunction in MYBPC3 Versus MYH7-Related Hypertrophic Cardiomyopathy.","authors":"Matteo Beltrami,&nbsp;Elisa Fedele,&nbsp;Carlo Fumagalli,&nbsp;Francesco Mazzarotto,&nbsp;Francesca Girolami,&nbsp;Cecilia Ferrantini,&nbsp;Raffaele Coppini,&nbsp;Lorenzo Tofani,&nbsp;Bruno Bertaccini,&nbsp;Corrado Poggesi,&nbsp;Iacopo Olivotto","doi":"10.1161/CIRCGEN.122.003832","DOIUrl":"https://doi.org/10.1161/CIRCGEN.122.003832","url":null,"abstract":"<p><strong>Background: </strong>The 2 sarcomere genes most commonly associated with hypertrophic cardiomyopathy (HCM), MYBPC3 (myosin-binding protein C3) and MYH7 (β-myosin heavy chain), are indistinguishable at presentation, and genotype-phenotype correlations have been elusive. Based on molecular and pathophysiological differences, however, it is plausible to hypothesize a different behavior in myocardial performance, impacting lifetime changes in left ventricular (LV) function.</p><p><strong>Methods: </strong>We reviewed the initial and final echocardiograms of 402 consecutive HCM patients with pathogenic or likely pathogenic MYBPC3 (n=251) or MYH7 (n=151) mutations, followed over 9±8 years.</p><p><strong>Results: </strong>At presentation, MYBPC3 patients were less frequently obstructive (15% versus 26%; <i>P</i>=0.005) and had lower LV ejection fraction compared with MYH7 (66±8% versus 68±8%, respectively; <i>P</i>=0.03). Both HCM patients harboring MYBPC3 and MYH7 mutations exhibited a small but significant decline in LV systolic function during follow-up; however, new onset of severe LV systolic dysfunction (LV ejection fraction, <50%) was greater among MYBPC3 patients (15% versus 5% among MYH7; <i>P</i>=0.013). Prevalence of grade II/III diastolic dysfunction at final evaluation was comparable between MYBPC3 and MYH7 patients (<i>P</i>=0.509). In a Cox multivariable analysis, MYBPC3-positive status (hazard ratio, 2.53 [95% CI, 1.09-5.82]; <i>P</i>=0.029), age (hazard ratio, 1.03 [95% CI, 1.00-1.06]; <i>P</i>=0.027), and atrial fibrillation (hazard ratio, 2.39 [95% CI, 1.14-5.05]; <i>P</i>=0.020) were independent predictors of severe systolic dysfunction. No statistically significant differences occurred with regard to incidence of atrial fibrillation, heart failure, appropriate implanted cardioverter defibrillator shock, or cardiovascular death.</p><p><strong>Conclusions: </strong>MYBPC3-related HCM showed increased long-term prevalence of systolic dysfunction compared with MYH7, in spite of similar outcome. Such observations suggest different pathophysiology of clinical progression in the 2 subsets and may prove relevant for understanding of genotype-phenotype correlations in HCM.</p>","PeriodicalId":10326,"journal":{"name":"Circulation: Genomic and Precision Medicine","volume":null,"pages":null},"PeriodicalIF":7.4,"publicationDate":"2023-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10419256","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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