M.J. Hajianpour , Kate Tauber , Joaquim Pinheiro , Bailey Whitbeck , Prima Das , John Pugh
{"title":"P071: Two de novo intronic mutations of GLS gene leading to glutaminase deficiency/autosomal recessive developmental and epileptic encephalopathy 71 (AR-DEE71)","authors":"M.J. Hajianpour , Kate Tauber , Joaquim Pinheiro , Bailey Whitbeck , Prima Das , John Pugh","doi":"10.1016/j.gimo.2025.102915","DOIUrl":"10.1016/j.gimo.2025.102915","url":null,"abstract":"","PeriodicalId":100576,"journal":{"name":"Genetics in Medicine Open","volume":"3 ","pages":"Article 102915"},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143637023","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Youbao Sha , J. Bryce Ortiz , Sara L. Bristow , Kate Loranger , Linyan Meng , Xiaonan Zhao , Fan Xia , Sheetal Parmar , Adam C. ElNaggar , Wenbo Xu
{"title":"Refining the interpretation of variants of uncertain significance in hereditary cancer screening through integrated RNA sequencing","authors":"Youbao Sha , J. Bryce Ortiz , Sara L. Bristow , Kate Loranger , Linyan Meng , Xiaonan Zhao , Fan Xia , Sheetal Parmar , Adam C. ElNaggar , Wenbo Xu","doi":"10.1016/j.gimo.2024.101914","DOIUrl":"10.1016/j.gimo.2024.101914","url":null,"abstract":"<div><h3>Purpose</h3><div>Although up to 25% of germline variants are predicted to affect splicing, most are classified as variants of uncertain significance (VUS) because of the limited understanding of their functional consequences. Here, we investigated the impact of RNA sequencing (RNA-seq) data on the ability to resolve splicing-related VUS.</div></div><div><h3>Methods</h3><div>Patients with VUS predicted to alter splicing identified through commercial hereditary cancer testing between October 2021 to July 2023 were included. RNA-seq was used to compare splicing patterns between patient blood samples and normal controls. VUS reclassification rates were calculated.</div></div><div><h3>Results</h3><div>In total, 411 VUS in 52 genes predicted to affect splicing were included. RNA-seq results resolved 26.3% (108/411) of the VUS: 28 (6.8%) upgraded to pathogenic/likely pathogenic, and 80 (19.5%) downgraded to not reportable. Among the 28 upgraded, 17 (60.7%) were intronic, 9 (32.1%) were exonic missense variants, and 2 (7.1%) were exonic synonymous variants. Most of the VUS downgraded to not reportable were intronic (64/80, 80%). The remaining 16 (20%) of the downgraded VUS were synonymous variants.</div></div><div><h3>Conclusion</h3><div>This study underscores the utility of RNA-seq to detect variants that affect splicing and could have an impact on cancer risk assessment management and treatment.</div></div>","PeriodicalId":100576,"journal":{"name":"Genetics in Medicine Open","volume":"3 ","pages":"Article 101914"},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11788803/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143124311","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"P048: Three year safety experience in children treated with govorestat for classic galactosemia","authors":"Evan Bailey , Riccardo Perfetti , Shoshana Shendelman","doi":"10.1016/j.gimo.2025.102892","DOIUrl":"10.1016/j.gimo.2025.102892","url":null,"abstract":"","PeriodicalId":100576,"journal":{"name":"Genetics in Medicine Open","volume":"3 ","pages":"Article 102892"},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143635822","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Markey McNutt II , Ogün Sazova , Milad Karimi , Naomi Schwartz , Frank Rutsch , Ania Muntau
{"title":"P002: Improvements in blood phenylalanine and health-related quality of life outcomes among adults with PKU receiving pegvaliase in the OPAL study*","authors":"Markey McNutt II , Ogün Sazova , Milad Karimi , Naomi Schwartz , Frank Rutsch , Ania Muntau","doi":"10.1016/j.gimo.2025.102846","DOIUrl":"10.1016/j.gimo.2025.102846","url":null,"abstract":"","PeriodicalId":100576,"journal":{"name":"Genetics in Medicine Open","volume":"3 ","pages":"Article 102846"},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143636371","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Cary Harding , Nicola Longo , Andreu Viader , Toby Vaughn , Fernanda Leal-Pardinas , Elaina Jurecki , Markey McNutt II , Ania Muntau , Rani Singh , Joel Barrish , George Vratsanos , Haoling Weng , John Throup
{"title":"O01: Efficacy and safety outcomes of JNT-517, a first-in-class SLC6A19 inhibitor, in adults with phenylketonuria: A randomized study","authors":"Cary Harding , Nicola Longo , Andreu Viader , Toby Vaughn , Fernanda Leal-Pardinas , Elaina Jurecki , Markey McNutt II , Ania Muntau , Rani Singh , Joel Barrish , George Vratsanos , Haoling Weng , John Throup","doi":"10.1016/j.gimo.2025.101964","DOIUrl":"10.1016/j.gimo.2025.101964","url":null,"abstract":"","PeriodicalId":100576,"journal":{"name":"Genetics in Medicine Open","volume":"3 ","pages":"Article 101964"},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143636379","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"P035: Withdrawn","authors":"","doi":"10.1016/j.gimo.2025.102879","DOIUrl":"10.1016/j.gimo.2025.102879","url":null,"abstract":"","PeriodicalId":100576,"journal":{"name":"Genetics in Medicine Open","volume":"3 ","pages":"Article 102879"},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143636698","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Vittoria Rossi , Brittany Hoyle , Kim Ng , Ivy Elvin , Nicole Engelhardt
{"title":"P082: Expanding clinical spectrums in carbamoyl phosphate synthetase I deficiency: A case series of four patients - a tertiary institution’s experience","authors":"Vittoria Rossi , Brittany Hoyle , Kim Ng , Ivy Elvin , Nicole Engelhardt","doi":"10.1016/j.gimo.2025.102926","DOIUrl":"10.1016/j.gimo.2025.102926","url":null,"abstract":"","PeriodicalId":100576,"journal":{"name":"Genetics in Medicine Open","volume":"3 ","pages":"Article 102926"},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143636703","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Guillermo del Angel , William Mowrey , Anna Petryk , Ben Hollis , Sebastian Wasilewski , Fengyuan Hu , Wei Ding , Slavé Petrovski
{"title":"P027: Genetic landscape of ALPL and other genes impacting alkaline phosphatase variation in the UK Biobank","authors":"Guillermo del Angel , William Mowrey , Anna Petryk , Ben Hollis , Sebastian Wasilewski , Fengyuan Hu , Wei Ding , Slavé Petrovski","doi":"10.1016/j.gimo.2025.102871","DOIUrl":"10.1016/j.gimo.2025.102871","url":null,"abstract":"","PeriodicalId":100576,"journal":{"name":"Genetics in Medicine Open","volume":"3 ","pages":"Article 102871"},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143636822","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Connor Littlefield , Jose Lazaro-Guevara , Devorah Stucki , Michael Lansford , Melissa Pezzolesi , Emma Taylor , Jacob Taloa , Kime Lao , Justina Tavana , William Holland , Kalani Raphael , Marcus Pezzolesi
{"title":"P028: Population-specific structural variation linked to metabolic diseases in people of Pacific ancestry","authors":"Connor Littlefield , Jose Lazaro-Guevara , Devorah Stucki , Michael Lansford , Melissa Pezzolesi , Emma Taylor , Jacob Taloa , Kime Lao , Justina Tavana , William Holland , Kalani Raphael , Marcus Pezzolesi","doi":"10.1016/j.gimo.2025.102872","DOIUrl":"10.1016/j.gimo.2025.102872","url":null,"abstract":"","PeriodicalId":100576,"journal":{"name":"Genetics in Medicine Open","volume":"3 ","pages":"Article 102872"},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143636868","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}