Sujun Ji, Zhiling Ding, Hang Yin, Daoyuan Zheng, Jin-feng Zhao
{"title":"Theoretical study on Xe⋯N non-covalent interactions: Three hybridization N with XeO3 and XeOF2","authors":"Sujun Ji, Zhiling Ding, Hang Yin, Daoyuan Zheng, Jin-feng Zhao","doi":"10.1063/1674-0068/cjcp2110182","DOIUrl":"https://doi.org/10.1063/1674-0068/cjcp2110182","url":null,"abstract":"The interactions of complexes of XeOF2 and XeO3 with a series of different hybridization N-containing donors are studied by means of DFT and MP2 calculations. The aerogen bonding interaction energies range from 6.5 kcal/mol to 19.9 kcal/mol between XeO3 or XeOF2 and typical N-containing donors. The sequence of interaction for N-containing hybridization is sp3>sp2>sp, and XeO3 is higher than XeOF2. For some donors of sp2 and sp3 hybridization, the steric effect plays a minor role in the interaction with the evidence of reduced density gradient plots. The dominant stable part is the electrostatic interaction. In complex of XeO3, the weight of polarization is larger than dispersion, while the situation is opposite for XeOF2 complexes. Except for the sum of the maximum value of molecular electrostatic potential on Xe atom and minimum value of molecular electrostatic potential on N atom, the otherfive interaction parameters including the potential energy density at bond critical point, the equilibrium distances, interaction energies with the basis set superposition error correction, localized molecular orbital energy decomposition analysis interaction energies, and the electron charge density, show great linear correlation coefficients with each other.","PeriodicalId":10036,"journal":{"name":"Chinese Journal of Chemical Physics","volume":null,"pages":null},"PeriodicalIF":1.0,"publicationDate":"2022-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48891928","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Zi-Yu Li, Li-Hui Mou, G. Jiang, Qing-Yu Liu, Sheng‐Gui He
{"title":"15 N/14N isotopic exchange in the dissociative adsorption of N2 on tantalum nitride cluster anions Ta3N3−","authors":"Zi-Yu Li, Li-Hui Mou, G. Jiang, Qing-Yu Liu, Sheng‐Gui He","doi":"10.1063/1674-0068/cjcp2112286","DOIUrl":"https://doi.org/10.1063/1674-0068/cjcp2112286","url":null,"abstract":"Adsorption and activation of dinitrogen (N2) is an indispensable process in nitrogen fixation. Metal nitride species continue to attract attention as a promising catalyst for ammonia synthesis. However, the detailed mechanisms at a molecular level between reactive nitride species and N2 remain unclear at elevated temperature, which is important to understand the temperature effect and narrow the gap between the gas phase system and condensed phase system. Herein, the 14N/15N isotopic exchange in the reaction between tantalum nitride cluster anions Ta314N3− and 15N2 leading to the regeneration of 14N2/14N15N was observed at elevated temperature (393−593 K) using mass spectrometry. With the aid of theoretical calculations, the exchange mechanism and the effect of temperature to promote the dissociation of N2 on Ta3N3− were elucidated. A comparison experiment for Ta314N4−/15N2 couple indicated that only desorption of 15N2 from Ta314N415N2− took place at elevated temperature. The different exchange behavior can be well understood by the fact that nitrogen vacancy is a requisite for the dinitrogen activation over metal nitride species. This study may shed light on understanding the role of nitrogen vacancy in nitride species for ammonia synthesis and provide clues in designing effective catalysts for nitrogen fixation.","PeriodicalId":10036,"journal":{"name":"Chinese Journal of Chemical Physics","volume":null,"pages":null},"PeriodicalIF":1.0,"publicationDate":"2022-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41360401","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
J. Gu, Zengjun Xiao, Chunting Yu, Qiang Zhang, Yang Chen, Dongfeng Zhao
{"title":"High resolution laser excitation spectra and Franck-Condon factors of A2Π−X2Σ+ electronic transition of MgF","authors":"J. Gu, Zengjun Xiao, Chunting Yu, Qiang Zhang, Yang Chen, Dongfeng Zhao","doi":"10.1063/1674-0068/cjcp2109151","DOIUrl":"https://doi.org/10.1063/1674-0068/cjcp2109151","url":null,"abstract":"Magnesium monofluoride (MgF) is proposed as an ideal candidate radical for direct laser cooling. Here, the rotationally resolved laser spectra of MgF for the A2Π− X2Σ+ electronic transition system were recorded by using laser induced fluorescence technique. The MgF radicals were produced by discharging SF6/Ar gas mixtures between the tips of two magnesium needles in a supersonic jet expansion. We recorded a total of 19 vibrational bands belonging to three sequences of Δ v=0, ±1 in the region of 348-370 nm. Accurate spectroscopic constants for both X2Σ+ and A2Π states are determined from rotational analysis of the experimental spectra. Spectroscopic parameters, including the Franck-Condon factors (FCFs), are determined from the experimental results and the Rydberg-Klein-Rees (RKR) calculations. Significant discrepancies between the experimentally measured and RKR-calculated FCFs are found, indicating that the FCFs are nearly independent of the spin-orbit coupling in the A2Π state. Potential energy curves (PECs) and FCFs determined here provide necessary data for the theoretical simulation of the laser-cooling scheme of MgF.","PeriodicalId":10036,"journal":{"name":"Chinese Journal of Chemical Physics","volume":null,"pages":null},"PeriodicalIF":1.0,"publicationDate":"2022-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48499846","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Wei Zhang, J. Kong, Wenqi Xu, Xinmiao Niu, D. Song, Weimin Liu, A. Xia
{"title":"Probing effect of solvation on photoexcited quadrupolar donor-acceptor-donor molecule via ultrafast Raman spectroscopy","authors":"Wei Zhang, J. Kong, Wenqi Xu, Xinmiao Niu, D. Song, Weimin Liu, A. Xia","doi":"10.1063/1674-0068/cjcp2111223","DOIUrl":"https://doi.org/10.1063/1674-0068/cjcp2111223","url":null,"abstract":"The symmetric and quadrupolar donor-acceptor-donor (D-A-D) molecules usually exhibit excited-state charge redistribution process from delocalized intramolecular charge transfer (ICT) state to localized ICT state. Direct observation of such charge redistribution process in real-time has been intensively studied via various ultrafast time-resolved spectroscopies. Femtosecond stimulated Raman spectroscopy (FSRS) is one of the powerful methods which can be used to determine the excited state dynamics by tracking vibrational mode evolution of the specific chemical bonds within molecules. Herein, a molecule, 4,4′-(buta-1,3-diyne-1,4-diyl)bis( N, N-bis(4-methoxyphenyl)aniline), that consists of two central adjacent alkyne (-C≡C-) groups as electron-acceptors and two separated, symmetric N, N-bis(4-methoxyphenyl)aniline at both branches as electron-donors, is chosen to investigate the excited-state photophysical properties. It is shown that the solvation induced excited-state charge redistribution in polar solvents can be probed by using femtosecond stimulated Raman spectroscopy. The results provide a fundamental understanding of photoexcitation induced charge delocalization/localization properties of the symmetric quadrupolar molecules with adjacent vibrational markers located at central position.","PeriodicalId":10036,"journal":{"name":"Chinese Journal of Chemical Physics","volume":null,"pages":null},"PeriodicalIF":1.0,"publicationDate":"2022-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47511963","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Solvent effects on excited-state relaxation dynamics of paddle-wheel BODIPY-Hexaoxatriphenylene conjugates: Insights from non-adiabatic dynamics simulations","authors":"Wen-Kai Chen, G. Cui, Xiangxuan Liu","doi":"10.1063/1674-0068/cjcp2110214","DOIUrl":"https://doi.org/10.1063/1674-0068/cjcp2110214","url":null,"abstract":"Understanding the excited state dynamics of donor-acceptor (D-A) complexes is of fundamental importance both experimentally and theoretically. Herein, we have first explored the photoinduced dynamics of a recently synthesized paddle-wheel BODIPY-hexaoxatriphenylene (BODIPY is the abbreviation for BF2-chelated dipyrromethenes) conjugates D-A complexes with the combination of both electronic structure calculations and non-adiabatic dynamics simulations. On the basis of computational results, we concluded that the BODIPY-hexaoxatriphenylene (BH) conjugates will be promoted to the local excited (LE) states of the BODIPY fragments upon excitation, which is followed by the ultrafast exciton transfer from LE state to charge transfer (CT). Instead of the photoinduced electron transfer process proposed in previous experimental work, such a exciton transfer process is accompanied with the photoinduced hole transfer from BODIPY to hexaoxatriphenylene. Additionally, solvent effects are found to play an important role in the photoinduced dynamics. Specifically, the hole transfer dynamics is accelerated by the acetonitrile solvent, which can be ascribed to significant influences of the solvents on the charge transfer states, i.e. the energy gaps between LE and CT excitons are reduced greatly and the non-adiabatic couplings are increased in the meantime. Our present work not only provides valuable insights into the underlying photoinduced mechanism of BH, but also can be helpful for the future design of novel donor-acceptor conjugates with better optoelectronic performance.","PeriodicalId":10036,"journal":{"name":"Chinese Journal of Chemical Physics","volume":null,"pages":null},"PeriodicalIF":1.0,"publicationDate":"2022-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43863700","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"QM/MM study on enzymatic mechanism in sinigrin biosynthesis","authors":"Yafang Guo, Yajun Liu","doi":"10.1063/1674-0068/cjcp2111250","DOIUrl":"https://doi.org/10.1063/1674-0068/cjcp2111250","url":null,"abstract":"As the major and abundant type of glucosinolates (GL) in plants, sinigrin has potential functions in promoting health and insect defense. The final step in the biosynthesis of sinigrin core structure is highly representative in GL compounds, which corresponds to the process from 3-methylthiopropyl ds-GL to 3-methylthiopropyl GL catalyzed by sulfotransferase (SOT). However, due to the lack of the crystallographic structure of SOT complexed with the 3-methylthiopropyl GL, little is known about this sulfonation process. Fortunately, the crystal structure of SOT 18 from Arabidopsis thaliana (AtSOT18) containing the substance (sinigrin) similar to 3-methylthiopropyl GL has been determined. To understand the enzymatic mechanism, we employed molecular dynamics (MD) simulation and quantum mechanics combined with molecular mechanics (QM/MM) methods to study the conversion from ds-sinigrin to sinigrin catalyzed by AtSOT18. The calculated results demonstrate that the reaction occurs through a concerted dissociative mechanism. Moreover, Lys93, Thr96, Thr97, Tyr130, His155, and two enzyme peptide chains (Pro92-Lys93 and Gln95-Thr96-Thr97) play a role in positioning the substrates and promoting the catalytic reaction by stabilizing the transition state geometry. Particularly, His155 acts as a catalytic base while Lys93 acts as a catalytic acid in the reaction process. The presently proposed concerted dissociative mechanism explains the role of AtSOT18 in sinigrin biosynthesis, and could be instructive for the study of GL biosynthesis catalyzed by other SOTs.","PeriodicalId":10036,"journal":{"name":"Chinese Journal of Chemical Physics","volume":null,"pages":null},"PeriodicalIF":1.0,"publicationDate":"2022-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47357641","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Basis sets dependency in constructing spectroscopy-accuracy Ab Initio global electric dipole moment functions","authors":"Yu Zhai, Hui Li","doi":"10.1063/1674-0068/cjcp2111244","DOIUrl":"https://doi.org/10.1063/1674-0068/cjcp2111244","url":null,"abstract":"Recently, more attention have been paid on the construction of dipole moment functions (DMF) using theoretical methods. However, the computational methods to construct DMFs are not validated as much as those for potential energy surfaces do. In this letter, using Ar ⋯ He as an example, we tested how spectroscopy-accuracy DMFs can be constructed using ab initio methods. We especially focused on the basis set dependency in this scenario, i.e., the convergence of DMF with the sizes of basis sets, basis set superposition error, and mid-bond functions. We also tested the explicitly correlated method, which converges with smaller basis sets than the conventional methods do. This work can serve as a pictorial sample of all these computational technologies behaving in the context of constructing DMFs.","PeriodicalId":10036,"journal":{"name":"Chinese Journal of Chemical Physics","volume":null,"pages":null},"PeriodicalIF":1.0,"publicationDate":"2022-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41712845","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The low-lying isomers of (TiO2)n (n=2-8) clusters","authors":"","doi":"10.1063/1674-0068/cjcp2111245","DOIUrl":"https://doi.org/10.1063/1674-0068/cjcp2111245","url":null,"abstract":"","PeriodicalId":10036,"journal":{"name":"Chinese Journal of Chemical Physics","volume":null,"pages":null},"PeriodicalIF":1.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"58526592","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Non-adiabatic Couplings Induced Complex-forming Mechanism in the H+MgH+→Mg++H2 Reaction","authors":"","doi":"10.1063/1674-0068/cjcp2111237","DOIUrl":"https://doi.org/10.1063/1674-0068/cjcp2111237","url":null,"abstract":"","PeriodicalId":10036,"journal":{"name":"Chinese Journal of Chemical Physics","volume":null,"pages":null},"PeriodicalIF":1.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"58526747","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Ab initio Nonadiabatic Dynamics of Semiconductor Nanomaterials via Surface Hopping Method","authors":"","doi":"10.1063/1674-0068/cjcp2111247","DOIUrl":"https://doi.org/10.1063/1674-0068/cjcp2111247","url":null,"abstract":"","PeriodicalId":10036,"journal":{"name":"Chinese Journal of Chemical Physics","volume":null,"pages":null},"PeriodicalIF":1.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"58526937","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}