Genomics discovery最新文献

{"title":"Comparative genome analysis of non-toxigenic non-O1 versus toxigenic O1 <i>Vibrio cholerae.</i>","authors":"Munmun Mukherjee,&nbsp;Prathusha Kakarla,&nbsp;Sanath Kumar,&nbsp;Esmeralda Gonzalez,&nbsp;Jared T Floyd,&nbsp;Madhuri Inupakutika,&nbsp;Amith Reddy Devireddy,&nbsp;Selena R Tirrell,&nbsp;Merissa Bruns,&nbsp;Guixin He,&nbsp;Ingrid E Lindquist,&nbsp;Anitha Sundararajan,&nbsp;Faye D Schilkey,&nbsp;Joann Mudge,&nbsp;Manuel F Varela","doi":"10.7243/2052-7993-2-1","DOIUrl":"https://doi.org/10.7243/2052-7993-2-1","url":null,"abstract":"<p><p>Pathogenic strains of <i>Vibrio cholerae</i> are responsible for endemic and pandemic outbreaks of the disease cholera. The complete toxigenic mechanisms underlying virulence in <i>Vibrio</i> strains are poorly understood. The hypothesis of this work was that virulent versus non-virulent strains of <i>V. cholerae</i> harbor distinctive genomic elements that encode virulence. The purpose of this study was to elucidate genomic differences between the O1 serotypes and non-O1 <i>V. cholerae</i> PS15, a non-toxigenic strain, in order to identify novel genes potentially responsible for virulence. In this study, we compared the whole genome of the non-O1 PS15 strain to the whole genomes of toxigenic serotypes at the phylogenetic level, and found that the PS15 genome was distantly related to those of toxigenic <i>V. cholerae</i>. Thus we focused on a detailed gene comparison between PS15 and the distantly related O1 <i>V. cholerae</i> N16961. Based on sequence alignment we tentatively assigned chromosome numbers 1 and 2 to elements within the genome of non-O1 <i>V. cholerae</i> PS15. Further, we found that PS15 and O1 <i>V. cholerae</i> N16961 shared 98% identity and 766 genes, but of the genes present in N16961 that were missing in the non-O1 <i>V. cholerae</i> PS15 genome, 56 were predicted to encode not only for virulence-related genes (colonization, antimicrobial resistance, and regulation of persister cells) but also genes involved in the metabolic biosynthesis of lipids, nucleosides and sulfur compounds. Additionally, we found 113 genes unique to PS15 that were predicted to encode other properties related to virulence, disease, defense, membrane transport, and DNA metabolism. Here, we identified distinctive and novel genomic elements between O1 and non-O1 <i>V. cholerae</i> genomes as potential virulence factors and, thus, targets for future therapeutics. Modulation of such novel targets may eventually enhance eradication efforts of endemic and pandemic disease cholera in afflicted nations.</p>","PeriodicalId":90832,"journal":{"name":"Genomics discovery","volume":"2 1","pages":"1-15"},"PeriodicalIF":0.0,"publicationDate":"2014-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4338557/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"33087869","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}