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Actin Filament Barbed-End Depolymerization by Combined Action of Profilin, Cofilin, and Twinfilin 肌动蛋白丝倒钩末端在 Profilin、Cofilin 和 Twinfilin 的联合作用下解聚
PRX Life Pub Date : 2024-07-16 DOI: 10.1103/prxlife.2.033002
Ankita Arya, Sandeep Choubey, Shashank Shekhar
{"title":"Actin Filament Barbed-End Depolymerization by Combined Action of Profilin, Cofilin, and Twinfilin","authors":"Ankita Arya, Sandeep Choubey, Shashank Shekhar","doi":"10.1103/prxlife.2.033002","DOIUrl":"https://doi.org/10.1103/prxlife.2.033002","url":null,"abstract":"Cellular actin dynamics results from the collective action of hundreds of regulatory proteins, majority of which target actin filaments at their barbed ends. Three key actin binding proteins—profilin, cofilin, and twinfilin—individually depolymerize filament barbed ends. Notwithstanding recent leaps in our understanding of their individual action, how they collectively regulate filament dynamics remains an open question. In the absence of direct and simultaneous visualization of these proteins at barbed ends, gaining mechanistic insights has been challenging. We have here investigated multicomponent dynamics of profilin, cofilin, and twinfilin using a hybrid approach that combines high-throughput single filament experiments with theory. We discovered that while twinfilin competes with profilin, it promotes binding of cofilin to filament sides. Interestingly, contrary to previous expectations, we found that profilin and cofilin can simultaneously bind the same filament barbed end, resulting in its accelerated depolymerization. Our study reveals that pairwise interactions can effectively capture depolymerization dynamics in simultaneous presence of all three proteins. We thus believe that our approach of employing a theory-experiment dialog can potentially help decipher multicomponent regulation of actin dynamics.\u0000 \u0000 \u0000 \u0000 \u0000 Published by the American Physical Society\u0000 2024\u0000 \u0000 \u0000","PeriodicalId":509876,"journal":{"name":"PRX Life","volume":"76 24","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141643179","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Divide-and-Conquer Quantum Algorithm for Hybrid de novo Genome Assemb 新基因组混合组装的分而治之量子算法
PRX Life Pub Date : 2024-04-23 DOI: 10.1103/prxlife.2.023006
Jing-Kai Fang, Yue-Feng Lin, Jun-Han Huang, Yibo Chen, Gao-Ming Fan, Yuhui Sun, Guanru Feng, Cong Guo, Tiejun Meng, Yong Zhang, Xun Xu, Jingen Xiang, Yuxiang Li
{"title":"Divide-and-Conquer Quantum Algorithm for Hybrid \u0000<mml:math xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"><mml:mrow><mml:mi>d</mml:mi><mml:mi>e</mml:mi></mml:mrow><mml:mo> </mml:mo><mml:mrow><mml:mi>n</mml:mi><mml:mi>o</mml:mi><mml:mi>v</mml:mi><mml:mi>o</mml:mi></mml:mrow></mml:math>\u0000 Genome Assemb","authors":"Jing-Kai Fang, Yue-Feng Lin, Jun-Han Huang, Yibo Chen, Gao-Ming Fan, Yuhui Sun, Guanru Feng, Cong Guo, Tiejun Meng, Yong Zhang, Xun Xu, Jingen Xiang, Yuxiang Li","doi":"10.1103/prxlife.2.023006","DOIUrl":"https://doi.org/10.1103/prxlife.2.023006","url":null,"abstract":"","PeriodicalId":509876,"journal":{"name":"PRX Life","volume":"139 5","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140668562","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Disentanglement of Evolutionary Constraints in Statistical Models of Proteins 解除蛋白质统计模型中的进化约束
PRX Life Pub Date : 2024-04-18 DOI: 10.1103/prxlife.2.023005
Haobo Wang, Shihao Feng, Kotaro Tsuboyama, Sirui Liu, G. Rocklin, Sergey Ovchinnikov
{"title":"Disentanglement of Evolutionary Constraints in Statistical Models of Proteins","authors":"Haobo Wang, Shihao Feng, Kotaro Tsuboyama, Sirui Liu, G. Rocklin, Sergey Ovchinnikov","doi":"10.1103/prxlife.2.023005","DOIUrl":"https://doi.org/10.1103/prxlife.2.023005","url":null,"abstract":"","PeriodicalId":509876,"journal":{"name":"PRX Life","volume":" 4","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140689523","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bacteria Tune a Trade-off between Adhesion and Migration to Colonize Surfaces under Flow 细菌在粘附和迁移之间权衡利弊,在流动的表面定殖
PRX Life Pub Date : 2024-04-12 DOI: 10.1103/prxlife.2.023003
A. N. Simsek, Matthias D. Koch, Joseph E. Sanfilippo, Zemer Gitai, G. Gompper, Benedikt Sabass
{"title":"Bacteria Tune a Trade-off between Adhesion and Migration to Colonize Surfaces under Flow","authors":"A. N. Simsek, Matthias D. Koch, Joseph E. Sanfilippo, Zemer Gitai, G. Gompper, Benedikt Sabass","doi":"10.1103/prxlife.2.023003","DOIUrl":"https://doi.org/10.1103/prxlife.2.023003","url":null,"abstract":"","PeriodicalId":509876,"journal":{"name":"PRX Life","volume":"14 11","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140712444","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Active Density Pattern Formation in Bacterial Binary Mixtures 细菌二元混合物中活性密度模式的形成
PRX Life Pub Date : 2024-04-04 DOI: 10.1103/prxlife.2.023002
Silvia Espada Burriel, R. Colin
{"title":"Active Density Pattern Formation in Bacterial Binary Mixtures","authors":"Silvia Espada Burriel, R. Colin","doi":"10.1103/prxlife.2.023002","DOIUrl":"https://doi.org/10.1103/prxlife.2.023002","url":null,"abstract":"","PeriodicalId":509876,"journal":{"name":"PRX Life","volume":"52 2","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140742063","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Mechanisms of Sarcomere Assembly in Muscle Cells Inferred from Sequential Ordering of Myofibril Components 从肌原纤维成分的顺序排列推断肌肉细胞中的肌节组装机制
PRX Life Pub Date : 2024-01-11 DOI: 10.1103/prxlife.2.013002
Francine Kolley, Clara Sidor, Benoit Dehapiot, F. Schnorrer, Benjamin M. Friedrich
{"title":"Mechanisms of Sarcomere Assembly in Muscle Cells Inferred from Sequential Ordering of Myofibril Components","authors":"Francine Kolley, Clara Sidor, Benoit Dehapiot, F. Schnorrer, Benjamin M. Friedrich","doi":"10.1103/prxlife.2.013002","DOIUrl":"https://doi.org/10.1103/prxlife.2.013002","url":null,"abstract":"","PeriodicalId":509876,"journal":{"name":"PRX Life","volume":"21 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-01-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139534425","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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