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Polypharmacy side effect prediction based on semi-implicit graph variational auto-encoder 基于半隐式图变自动编码器的多药副作用预测
Journal of Bioinformatics and Computational Biology Pub Date : 2024-07-26 DOI: 10.1142/s0219720024500203
Zhou Yi, Minzhu Xie
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引用次数: 0
DNA sequences alignment method using sparse index on pan-genome graph 在泛基因组图谱上使用稀疏索引的 DNA 序列比对方法
Journal of Bioinformatics and Computational Biology Pub Date : 2024-07-26 DOI: 10.1142/s0219720024500197
Jia Gao, Yun Xu
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引用次数: 0
CW-PRED: PREDICTION OF C-TERMINAL SURFACE ANCHORING SORTING SIGNALS IN BACTERIA AND ARCHAEA CW-PRED：预测细菌和古细菌的 c 端表面锚定分选信号
Journal of Bioinformatics and Computational Biology Pub Date : 2024-07-26 DOI: 10.1142/s0219720024500215
Aikaterini G. Chatziargyri, Evangelia A. Stasi, Konstantinos I. Tsirigos, Zoi I. Litou, V. Iconomidou, P. Bagos
{"title":"CW-PRED: PREDICTION OF C-TERMINAL SURFACE ANCHORING SORTING SIGNALS IN BACTERIA AND ARCHAEA","authors":"Aikaterini G. Chatziargyri, Evangelia A. Stasi, Konstantinos I. Tsirigos, Zoi I. Litou, V. Iconomidou, P. Bagos","doi":"10.1142/s0219720024500215","DOIUrl":"https://doi.org/10.1142/s0219720024500215","url":null,"abstract":"","PeriodicalId":509305,"journal":{"name":"Journal of Bioinformatics and Computational Biology","volume":"2 4","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141801266","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
An Ensemble approach for Circular RNA-Disease Association prediction using Variational Autoencoder and Genetic Algorithm 利用变异自动编码器和遗传算法进行环状 RNA 与疾病关联预测的集合方法
Journal of Bioinformatics and Computational Biology Pub Date : 2024-07-05 DOI: 10.1142/s0219720024500185
C. M. Salooja, Arjun Sanker, K. Deepthi, A. S. Jereesh
{"title":"An Ensemble approach for Circular RNA-Disease Association prediction using Variational Autoencoder and Genetic Algorithm","authors":"C. M. Salooja, Arjun Sanker, K. Deepthi, A. S. Jereesh","doi":"10.1142/s0219720024500185","DOIUrl":"https://doi.org/10.1142/s0219720024500185","url":null,"abstract":"","PeriodicalId":509305,"journal":{"name":"Journal of Bioinformatics and Computational Biology","volume":" 43","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141675399","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Analyzing the performance of short read classification tools on metagenomic samples toward proper diagnosis of diseases 分析短读数分类工具在元基因组样本上的性能，以正确诊断疾病
Journal of Bioinformatics and Computational Biology Pub Date : 2024-05-17 DOI: 10.1142/s0219720024500124
Leila Irankhah, Babak Khorsand, Mahmoud Naghibzadeh, Abdorreza Savadi
{"title":"Analyzing the performance of short read classification tools on metagenomic samples toward proper diagnosis of diseases","authors":"Leila Irankhah, Babak Khorsand, Mahmoud Naghibzadeh, Abdorreza Savadi","doi":"10.1142/s0219720024500124","DOIUrl":"https://doi.org/10.1142/s0219720024500124","url":null,"abstract":"","PeriodicalId":509305,"journal":{"name":"Journal of Bioinformatics and Computational Biology","volume":"57 51","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140965237","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Body plan evolvability: the role of variability in gene regulatory networks 体表可进化性：基因调控网络中可变性的作用
Journal of Bioinformatics and Computational Biology Pub Date : 2024-05-17 DOI: 10.1142/s0219720024500112
Alexander V. Spirov, Ekaterina M. Myasnikova, D. Holloway
{"title":"Body plan evolvability: the role of variability in gene regulatory networks","authors":"Alexander V. Spirov, Ekaterina M. Myasnikova, D. Holloway","doi":"10.1142/s0219720024500112","DOIUrl":"https://doi.org/10.1142/s0219720024500112","url":null,"abstract":"","PeriodicalId":509305,"journal":{"name":"Journal of Bioinformatics and Computational Biology","volume":"4 11","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140962715","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
MORF_ESM: Prediction of Morfs in Disordered Proteins Based on a Deep Transformer Protein Language Model MORF_ESM：基于深度变形蛋白质语言模型预测紊乱蛋白质中的变形蛋白
Journal of Bioinformatics and Computational Biology Pub Date : 2024-03-22 DOI: 10.1142/s0219720024500069
Chun Fang, Jiasheng He, Hayato Yamana
{"title":"MORF_ESM: Prediction of Morfs in Disordered Proteins Based on a Deep Transformer Protein Language Model","authors":"Chun Fang, Jiasheng He, Hayato Yamana","doi":"10.1142/s0219720024500069","DOIUrl":"https://doi.org/10.1142/s0219720024500069","url":null,"abstract":"","PeriodicalId":509305,"journal":{"name":"Journal of Bioinformatics and Computational Biology","volume":" 12","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-03-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140215333","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
iCEED: Integrated Customized Extraction of Enzyme Data iCEED：综合定制提取酶数据
Journal of Bioinformatics and Computational Biology Pub Date : 2024-03-08 DOI: 10.1142/s0219720024500057
Rajiv Karbhal, Sangeeta Sawant, U. Kulkarni-Kale
{"title":"iCEED: Integrated Customized Extraction of Enzyme Data","authors":"Rajiv Karbhal, Sangeeta Sawant, U. Kulkarni-Kale","doi":"10.1142/s0219720024500057","DOIUrl":"https://doi.org/10.1142/s0219720024500057","url":null,"abstract":"","PeriodicalId":509305,"journal":{"name":"Journal of Bioinformatics and Computational Biology","volume":"16 4","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-03-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140257971","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Integrating Pharmacophore Model and Deep Learning for Activity Prediction of Molecules with BRCA1 Gene 整合药理模型和深度学习，预测 BRCA1 基因分子的活性
Journal of Bioinformatics and Computational Biology Pub Date : 2024-02-16 DOI: 10.1142/s0219720024500033
Seloua Hadiby, Yamina Mohamed Ben Ali
{"title":"Integrating Pharmacophore Model and Deep Learning for Activity Prediction of Molecules with BRCA1 Gene","authors":"Seloua Hadiby, Yamina Mohamed Ben Ali","doi":"10.1142/s0219720024500033","DOIUrl":"https://doi.org/10.1142/s0219720024500033","url":null,"abstract":"","PeriodicalId":509305,"journal":{"name":"Journal of Bioinformatics and Computational Biology","volume":"45 32","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139961594","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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