{"title":"Transcriptional and Epigenetic Regulation of Krüppel-Like Transcription Factors","authors":"Morgan D. Salmon","doi":"10.5772/intechopen.91652","DOIUrl":"https://doi.org/10.5772/intechopen.91652","url":null,"abstract":"Krüppel-like factors (KLFs) are a family of zinc finger transcription factors (ZF-TF) that are now known to be involved in complex biological processes including cancer, proliferation, and cardiovascular disease as well as developmental processes. KLFs first gained notoriety when it became known that they are crucial for promoting and maintenance of stem cell pluripotency. Over the past 20 years since the discovery of Krüppel-like factor 1 (KLF1), this transcription factor family has grown to include 18 members and 7 closely related members of the specificity protein 1 (Sp1) family. In the present study, we review the mechanisms related to regulation of KLFs by direct promoter activation or repression. We will also review and discuss some mechanisms of posttranslational modifications that could affect KLF function. We seek to understand how these transcriptional regulators are themselves regulated and how that regulation could become aberrant during various disease processes.","PeriodicalId":195225,"journal":{"name":"Gene Expression and Phenotypic Traits","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2020-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129128120","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Specific Features of Sex Determination in Birds on the Example ofGallus gallusdomesticus","authors":"A. Smirnov, A. V. Trukhina","doi":"10.5772/intechopen.91178","DOIUrl":"https://doi.org/10.5772/intechopen.91178","url":null,"abstract":"The chapter is devoted to the consideration of sex determination in birds. The appearance of heteromorphic sex chromosomes (birds) has led to the emergence of some specific W chromosomal signal, which provides estrogen control of the development of a heterogametic sex. At present, two hypotheses about sex determination in birds compete. One of these hypotheses considers the number of Z chromosomes as a key sex-determining factor, while the other hypothesis supposes the presence in W chromosome of the key gene controlling ovarian development or suppressing the appearance of testes. Into the modern scheme of the genetic control of sex determination in birds (practically within the hypothesis of dose compensation), an epigenetic mechanism was added. The appearance of gonads in birds is most likely determined by sex hormones and to the greatest extent by estrogen under the control of W chromosome. It is desirable to pay attention to noncoding RNAs, their connection with the W chromosome and their role in bird sex determination.","PeriodicalId":195225,"journal":{"name":"Gene Expression and Phenotypic Traits","volume":"18 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2020-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126208414","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Environmental Factors Affecting the Expression of Bilateral-Symmetrical Traits in Plants","authors":"S. Baranov, I. Vinokurov, L. Fedorova","doi":"10.5772/intechopen.89460","DOIUrl":"https://doi.org/10.5772/intechopen.89460","url":null,"abstract":"In recent years, there has been a growing interest in the problem of asymmetry of bilateral traits in plants. Three types of bilateral asymmetry are found in the leaf blade, of interest to ecologists and evolutionists. A brief review of the methods used in testing bilateral asymmetry and developmental stability discusses their role in the development of homeostasis and ontogenesis. Intra- and interspecific differences are considered on the example of woody plants under the influence of factors influencing the expression of bilaterally symmetry. The influence of stress on the manifestation of asymmetric traits is considered. Apparently, the climate and topography of the area play a more important role, determining the plastic and fluctuating variability. The relationship of plasticity, evolutionary canalization, and development stability is considered on the example of woody and cultivated plants. Plasticity and fluctuation variability are in a relationship coordinated by climatic conditions, primarily lighting and temperature. This, in turn, determines the mechanisms of gene regulatory networks. Thus, phenogenetics, which studies the patterns and mechanisms of gene expression and ontogenesis, is based on the data from field botanical studies of plant shape and asymmetry. Epigenetic and population studies of phenotypic variations play a role in standardizing and finding suitable plant species and varieties.","PeriodicalId":195225,"journal":{"name":"Gene Expression and Phenotypic Traits","volume":"14 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-12-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"122773878","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Circular RNAs and Its Biological Functions in Health and Disease","authors":"A. Sağlam, E. Alp, H. Onen","doi":"10.5772/intechopen.88764","DOIUrl":"https://doi.org/10.5772/intechopen.88764","url":null,"abstract":"Circular RNAs (circRNAs) belong to the family of long noncoding RNAs (lncRNA) that, unlike linear RNAs, are characterized by a covalently closed circular RNA structure lacking 5 0 cap and 3 0 poly-adenylated tails. circRNAs have a role in epigenetic regulation of downstream targets. circRNAs play a crucial role in regulating gene and protein expressions by acting as a microRNA (miRNA) sponge and RNA binding protein (RBP) sponge and interact with proteins to affect cell behav-ior. circRNA expression profiles differ between physiological and pathological states. Moreover, the expression patterns of circRNAs exhibit differences in a tissue-specific manner. Although investigations on circRNAs have been exploding nowadays, yet only a limited number of circRNAs are identified. Furthermore, further researches are needed to shed light on their functions and targets. Therefore, circRNAs are becoming vital as potential biomarkers that may be used for the diagnosis and treatment of diseases. In this chapter, we review the current advancement of cirRNAs with regard to their biogenesis, biological functions, gene regulatory mechanisms, and implications in human diseases and summarize the recent studies on circRNAs as potential diagnostic and prognostic biomarkers based on existing knowledge.","PeriodicalId":195225,"journal":{"name":"Gene Expression and Phenotypic Traits","volume":"87 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116311636","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Gene Expression Profile of HDF in SMG Partially Overlaps with That in the NASA Twins Study","authors":"J. Q. Clement","doi":"10.5772/intechopen.88957","DOIUrl":"https://doi.org/10.5772/intechopen.88957","url":null,"abstract":"Microgravity research is an important field in biomedical sciences not only due to our interest in exploring and living in space, but also because of the insights it gives on earthbound health conditions. Using a human dermal fibroblast (HDF) cell line cultured in simulated microgravity (SMG) in combination with high throughput cDNA microarrays and quantitative Northern analysis, 271 differentially regulated genes were identified and 72% of these genes were also reported in the high throughput gene expression data of the recent National Aeronautics and Space Administration (NASA) Twins Study. The identification of the large number of overlapping microgravity sensitive genes between the skin fibroblast in microgravity and astronaut’s peripheral blood mononuclear cells (PBMCs) indicated that microgravity alone, without space radiation, was able to elicit an adaptive response involving a set of about 200 genes. Further analysis of the overlapping genes with the same direction of regulation (86 genes) and opposite direction of regulation (108 genes) revealed important pathways and cellular processes in the microgravity adaptation responses.","PeriodicalId":195225,"journal":{"name":"Gene Expression and Phenotypic Traits","volume":"33 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-09-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"122679622","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Instability of Sex-Determining Systems in Frogs","authors":"Michihiko Ito","doi":"10.5772/intechopen.89050","DOIUrl":"https://doi.org/10.5772/intechopen.89050","url":null,"abstract":"All of the anuran amphibians examined so far have genetic sex-determining systems, which include female heterogametic ZZ/ZW and male heterogametic XX/ XY types. For example, the Japanese wrinkled frog Glandirana rugosa has both types. Most of frog species including the African clawed frog Xenopus laevis possess homomorphic sex chromosomes, while most mammalian and avian species have heteromorphic sex chromosomes. Thus, there should be a variety of sexdetermining genes and sex chromosomes in frogs, although only X. laevis W-linked gene dm-W has been reported as a sex-determining gene. Interestingly, estrogen or androgen can induce sex reversal in many frog species, suggesting a vital role of sex steroid hormones on sex identity. In other words, frogs in the same order are good examples for the understanding of diversity of sex-determining systems. In this chapter, I summarize the diversity of frog sex-determining systems and discuss why sex-determining genes and systems have been unstable in frogs.","PeriodicalId":195225,"journal":{"name":"Gene Expression and Phenotypic Traits","volume":"34 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-09-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"122390119","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Sellafield, Seascale, and Scandinavia: A Legacy of Radioactive Contamination with Future Implications for Gene Evolution in Affected Ecosystems","authors":"C. Siddoo-Atwal","doi":"10.5772/INTECHOPEN.88505","DOIUrl":"https://doi.org/10.5772/INTECHOPEN.88505","url":null,"abstract":"Radioactive waste from nuclear installations and nuclear reprocessing plants, nuclear accidents, and radioactive fallout from nuclear weapons testing constitute a serious problem facing future generations. Marine algae and phytoplanktons accumu-late radionuclides from their surroundings and are used as bioindicators of radioactive pollution in the environment. In Northern Europe, the affected marine systems include the Irish Sea, the Baltic Sea, and the North Sea. The main sources of this radioactive contamination are global fallout from nuclear weapons tests, river transport from Siberia, and marine transport of discharges from Sellafield and Chernobyl. An increased leukemia incidence has been observed in young children at Seascale near Sellafield, and an elevated incidence of leukemia has been recorded among young people (0–24 years) in the French canton of Beaumont-Hague close to the Cap de la Hague nuclear reprocessing facility. In Scandinavia, scientists suspect that people in parts of Sweden are still dying from cancer caused by radiation from the Chernobyl accident. Moreover, the Baltic Sea is contaminated with man-made plutonium radionuclides from nuclear reprocessing. However, some experts are able to dismiss the above relationships due to important uncertainties over the estimation of radiation doses from environmental discharges based on a mutational theory of carcinogenesis. Consequently, it appears to be of paramount importance to reevaluate the current methods for cancer risk assessment in the case of radiation exposure within the context of an apoptotic model of carcinogenesis that could explain such a discrepancy. According to this new model, subtle differences in gene expression in response to a carcinogen can initiate cell death or apoptosis and act as a trigger for carcinogenesis. Simultaneously, future implications for human gene evolution are unavoidable.","PeriodicalId":195225,"journal":{"name":"Gene Expression and Phenotypic Traits","volume":"5 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128544924","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Comparison of Sex Determination in Vertebrates (Nonmammals)","authors":"Aleksandr F. Smirnov, Antonina V. Trukhina","doi":"10.5772/INTECHOPEN.83831","DOIUrl":"https://doi.org/10.5772/INTECHOPEN.83831","url":null,"abstract":"The chapter is devoted to the consideration of sex determination in vertebrate groups of nonmammalians: fish, amphibians, reptiles, and birds. Attention is drawn to the fact that all these groups of animals, unlike mammals, are implemented hormonal control options for primary sex determination, and there is a possibility of sex reversion. Determination of gonadal development in vertebrates like testis or ovary was initially controlled mainly by sex hormones (fish and amphibians). Later, various sex determining genes were involved in this process. The system was quite plastic and was able to respond to changes in external conditions (reptiles). The appearance of heteromorphic sex chromosomes (birds) has led to the emergence of some specific W chromosomal signal, which provides estrogen control of the development of a heterogametic sex. In mammals, the control of the primary determination of sex (the appearance of the gonad) becomes purely genetic, and the role of sex hormones is reduced to the differentiation of testis or ovaries.","PeriodicalId":195225,"journal":{"name":"Gene Expression and Phenotypic Traits","volume":"29 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-02-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"117237677","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}