Trends in the systematics of bacteria and fungi最新文献

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MALDI-TOF MS and currently related proteomic technologies in reconciling bacterial systematics. MALDI-TOF质谱和目前相关的蛋白质组学技术在协调细菌系统中的应用。
Trends in the systematics of bacteria and fungi Pub Date : 2020-12-17 DOI: 10.1079/9781789244984.0093
Ajit J Shah, H. Shah, Malcom Ward, I. Dekio, Lyna Selami, O. Belgacem, L. Duncan, K. Bruce, Zhen Xu, Hermine V. Mkrtchyan, R. Cave, Laila M. N. Shah, S. Gharbia
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引用次数: 2
Where to now? 现在去哪儿?
Trends in the systematics of bacteria and fungi Pub Date : 1900-01-01 DOI: 10.1079/9781789244984.0320
P. Bridge, E. Stackebrandt, David Smith
{"title":"Where to now?","authors":"P. Bridge, E. Stackebrandt, David Smith","doi":"10.1079/9781789244984.0320","DOIUrl":"https://doi.org/10.1079/9781789244984.0320","url":null,"abstract":"Abstract\u0000 This chapter provides information on the status quo of molecular assessment of prokaryotes, fungi and yeast. The recent developments in sequencing approaches to assess the diversity of cultured and not-as-yet-cultured organisms and metagenomes, together with the most widely applied algorithms for gene annotation and the pros and cons of defining taxon ranks, are outlined and discussed.","PeriodicalId":169682,"journal":{"name":"Trends in the systematics of bacteria and fungi","volume":"2013 8","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"1900-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"120968557","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genomes reveal the cohesiveness of bacterial species taxa and provide a path towards describing all of bacterial diversity. 基因组揭示了细菌物种分类群的内聚性,并为描述所有细菌多样性提供了一条途径。
Trends in the systematics of bacteria and fungi Pub Date : 1900-01-01 DOI: 10.1079/9781789244984.0282
F. Cohan
{"title":"Genomes reveal the cohesiveness of bacterial species taxa and provide a path towards describing all of bacterial diversity.","authors":"F. Cohan","doi":"10.1079/9781789244984.0282","DOIUrl":"https://doi.org/10.1079/9781789244984.0282","url":null,"abstract":"Abstract\u0000 This book chapter argues that bacterial systematists of the mid-20th century fortuitously created a species-level systematics that actually fits an important universal theory of speciation by discussing taxonomy would allow us to infer the important characteristics of any unknown organism once we classify it to species. It turns out, unexpectedly, that bacterial species taxa share a species-like property with the species taxa of zoology and botany. While recombination within species taxa of all these groups fails to prevent diversification within species, recombination nevertheless appears to act universally as a force of cohesion within species taxa. That is, recurrent recombination within species limits neutral sequence divergence within species taxa of plants, animals, and bacteria; recombination also allows a sharing of generally adaptive genes across a species range. The 95% ANI criterion that demarcates the traditionally defined species taxa of bacteria fortuitously also yields groups of bacteria that are subject to the species-like property of cohesion, where recombination prevents neutral sequence divergence among ecotypes within a species. Use of the ANI criterion, then, not only provides an easily used algorithm for demarcating bacterial species; it also places bacterial demarcation on the same theory-based foundation as the species taxonomy of animals and plants.","PeriodicalId":169682,"journal":{"name":"Trends in the systematics of bacteria and fungi","volume":"14 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"1900-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128446562","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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