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readfcs: Read FCS files readfcs:读取FCS文件
Lamin Reports Pub Date : 1900-01-01 DOI: 10.56528/rfcs
Sunny Sun, A. Wolf
{"title":"readfcs: Read FCS files","authors":"Sunny Sun, A. Wolf","doi":"10.56528/rfcs","DOIUrl":"https://doi.org/10.56528/rfcs","url":null,"abstract":"readfcs loads data and metadata from Flow Cytometry Standard (FCS) files efficiently into general DataFrame and AnnData objects. Existing tools, by contrast, provide FCS parsers and data structures for specific downstream applications. readfcs allows to flexibly access data and metadata slots and offers a robust, tested implementation.","PeriodicalId":149609,"journal":{"name":"Lamin Reports","volume":"27 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"1900-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123843891","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
nbproject: Manage Jupyter notebooks 管理Jupyter笔记本
Lamin Reports Pub Date : 1900-01-01 DOI: 10.56528/nbp
Sergei Rybakov, Lukas Heumos, Alex Wolf
{"title":"nbproject: Manage Jupyter notebooks","authors":"Sergei Rybakov, Lukas Heumos, Alex Wolf","doi":"10.56528/nbp","DOIUrl":"https://doi.org/10.56528/nbp","url":null,"abstract":"nbproject is an open-source Python tool to help manage Jupyter notebooks with metadata, dependency, and integrity tracking. A draft-to-publish workflow creates more reproducible notebooks with context. There are a number of approaches to address reproducibility & manageability problems of computational R&D projects. nbproject complements - and should be combined with - approaches that are based on modularizing notebooks into pipelines, containerizing compute environments, or managing notebooks on centralized platforms.","PeriodicalId":149609,"journal":{"name":"Lamin Reports","volume":"20 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"1900-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116169177","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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